메뉴 건너뛰기




Volumn 680, Issue , 2010, Pages 379-385

Taxonomic parsing of bacteriophages using core genes and in silico proteome-based cgug and applications to small bacterial genomes

Author keywords

Bacterial genomes; CGUG; Core genes; Genomics; Pan genome; Proteomics approach; Web based tool

Indexed keywords

BACTERIAL PROTEIN; PROTEIN AU1054; PROTEOME; UNCLASSIFIED DRUG; VIRUS PROTEIN;

EID: 79952198711     PISSN: 00652598     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4419-5913-3_43     Document Type: Conference Paper
Times cited : (4)

References (15)
  • 1
    • 0642342573 scopus 로고    scopus 로고
    • CoreGenes: A computational tool for identifying and cataloging "core" genes in a set of small genomes
    • Zafar N, Mazumder R, Seto D (2002) CoreGenes: a computational tool for identifying and cataloging "core" genes in a set of small genomes. BMC bioinformatics 3,12
    • (2002) BMC Bioinformatics , vol.3 , pp. 12
    • Zafar, N.1    Mazumder, R.2    Seto, D.3
  • 2
    • 24944524898 scopus 로고    scopus 로고
    • International Committee on Taxonomy of Viruses and the 3,142 unassigned species
    • Fauquet CM, Fargette D (2005) International Committee on Taxonomy of Viruses and the 3,142 unassigned species. Virology journal 2,64
    • (2005) Virology Journal , vol.2 , pp. 64
    • Fauquet, C.M.1    Fargette, D.2
  • 3
    • 6044228193 scopus 로고    scopus 로고
    • Phage taxonomy: We agree to disagree
    • DOI 10.1128/JB.186.21.7029-7031.2004
    • Nelson D (2004) Phage taxonomy: we agree to disagree. Journal of bacteriology 186, 7029-7031 (Pubitemid 39383089)
    • (2004) Journal of Bacteriology , vol.186 , Issue.21 , pp. 7029-7031
    • Nelson, D.1
  • 4
    • 0036330981 scopus 로고    scopus 로고
    • The Phage Proteomic Tree: A genome-based taxonomy for phage
    • Rohwer F, Edwards R (2002) The Phage Proteomic Tree: a genome-based taxonomy for phage. Journal of bacteriology 184, 4529-1535
    • (2002) Journal of Bacteriology , vol.184 , pp. 4529-1535
    • Rohwer, F.1    Edwards, R.2
  • 5
    • 1542272747 scopus 로고    scopus 로고
    • Comparative genomics, minimal gene-sets and the last universal common ancestor
    • Koonin EV (2003) Comparative genomics, minimal gene-sets and the last universal common ancestor. Nature reviews 1, 127-136
    • (2003) Nature Reviews , vol.1 , pp. 127-136
    • Koonin, E.V.1
  • 6
    • 1342271382 scopus 로고    scopus 로고
    • From gene trees to organismal phylogeny in prokar- yotes: The case of the gamma-Proteobacteria
    • Lerat E, Daubin V, Moran NA (2003) From gene trees to organismal phylogeny in prokar- yotes: the case of the gamma-Proteobacteria. PLoS biology 1, E19
    • (2003) PLoS Biology , vol.1
    • Lerat, E.1    Daubin, V.2    Moran, N.A.3
  • 7
    • 49149115195 scopus 로고    scopus 로고
    • Unifying classical and molecular taxonomic classification: Analysis of the Podoviridae using BLASTP-based tools
    • Lavigne R, Seto D, Mahadevan P, Ackermann H-W, Kropinski AM (2008) Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools. Research in microbiology 159, 406-414
    • (2008) Research in Microbiology , vol.159 , pp. 406-414
    • Lavigne, R.1    Seto, D.2    Mahadevan, P.3    Ackermann, H.-W.4    Kropinski, A.M.5
  • 8
    • 0035098916 scopus 로고    scopus 로고
    • GeneOrder: Comparing the order of genes in small genomes
    • Mazumder R, Kolaskar A, Seto D (2001) GeneOrder: comparing the order of genes in small genomes. Bioinformatics (Oxford, England) 17, 162-166 (Pubitemid 32208525)
    • (2001) Bioinformatics , vol.17 , Issue.2 , pp. 162-166
    • Mazumder, R.1    Kolaskar, A.2    Seto, D.3
  • 12
    • 0042622243 scopus 로고    scopus 로고
    • SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence
    • DOI 10.1093/nar/gkg600
    • Cai CZ, Han LY, Ji ZL, Chen X, Chen YZ (2003) SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence. Nucleic acids research 31, 3692-3697 (Pubitemid 37442225)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3692-3697
    • Cai, C.Z.1    Han, L.Y.2    Ji, Z.L.3    Chen, X.4    Chen, Y.Z.5
  • 13
    • 0031973624 scopus 로고    scopus 로고
    • AtzC is a new member of the amidohydrolase protein superfamily and is homologous to other atrazine-metabolizing enzymes
    • Sadowsky MJ, Tong Z, de Souza M, Wackett LP (1998) AtzC is a new member of the amidohydrolase protein superfamily and is homologous to other atrazine-metabolizing enzymes. Journal of bacteriology 180, 152-158 (Pubitemid 28023795)
    • (1998) Journal of Bacteriology , vol.180 , Issue.1 , pp. 152-158
    • Sadowsky, M.J.1    Tong, Z.2    De Souza, M.3    Wackett, L.P.4
  • 15
    • 63849246525 scopus 로고    scopus 로고
    • Protein structure prediction on the web: A case study using the Phyre server
    • Kelley LA, Sternberg MJE (2009) Protein structure prediction on the web: a case study using the Phyre server. Nature protocols 4, 363-371
    • (2009) Nature Protocols , vol.4 , pp. 363-371
    • Kelley, L.A.1    Mje, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.