-
2
-
-
59349095840
-
Structure and function of DNA topoisomerases
-
In: Rice PA, Correll CC, eds., London: Royal Society of Chemistry
-
Dong KC, Berger JM (2008) Structure and function of DNA topoisomerases. In: Rice PA, Correll CC, eds. Protein-nucleic acid interactions: structural biology. London: Royal Society of Chemistry.
-
(2008)
Protein-nucleic acid interactions: Structural biology
-
-
Dong, K.C.1
Berger, J.M.2
-
3
-
-
50649101663
-
DNA topoisomerases: Harnessing and constraining energy to govern chromosome topology
-
Schoeffler AJ, Berger JM (2008) DNA topoisomerases: harnessing and constraining energy to govern chromosome topology. Q Rev Biophys 41: 41-101.
-
(2008)
Q Rev Biophys
, vol.41
, pp. 41-101
-
-
Schoeffler, A.J.1
Berger, J.M.2
-
4
-
-
34447323073
-
Energy Coupling in Type II Topoisomerases: Why Do They Hydrolyze ATP?
-
Bates AD, Maxwell A (2007) Energy Coupling in Type II Topoisomerases: Why Do They Hydrolyze ATP? Biochemistry 46: 7929-7941.
-
(2007)
Biochemistry
, vol.46
, pp. 7929-7941
-
-
Bates, A.D.1
Maxwell, A.2
-
5
-
-
34247350048
-
Thirty years of Escherichia coli DNA gyrase: From in vivo function to single-molecule mechanism
-
Nollmann M, Crisona NJ, Arimondo PB (2007) Thirty years of Escherichia coli DNA gyrase: from in vivo function to single-molecule mechanism. Biochimie 89: 490-499.
-
(2007)
Biochimie
, vol.89
, pp. 490-499
-
-
Nollmann, M.1
Crisona, N.J.2
Arimondo, P.B.3
-
7
-
-
0032973659
-
DNA gyrase as a drug target
-
Maxwell A (1999) DNA gyrase as a drug target. Biochem Soc Trans 27: 48-53.
-
(1999)
Biochem Soc Trans
, vol.27
, pp. 48-53
-
-
Maxwell, A.1
-
8
-
-
16644363932
-
DNA gyrase is involved in chloroplast nucleoid partitioning
-
Cho HS, Lee SS, Kim KD, Hwang I, Lim JS, et al. (2004) DNA gyrase is involved in chloroplast nucleoid partitioning. Plant Cell 16: 2665-2682.
-
(2004)
Plant Cell
, vol.16
, pp. 2665-2682
-
-
Cho, H.S.1
Lee, S.S.2
Kim, K.D.3
Hwang, I.4
Lim, J.S.5
-
9
-
-
2442717681
-
Arabidopsis thaliana DNA gyrase is targeted to chloroplasts and mitochondria
-
Wall MK, Mitchenall LA, Maxwell A (2004) Arabidopsis thaliana DNA gyrase is targeted to chloroplasts and mitochondria. Proc Natl Acad Sci U S A 101: 7821-7826.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 7821-7826
-
-
Wall, M.K.1
Mitchenall, L.A.2
Maxwell, A.3
-
10
-
-
67349265516
-
Conservation of dual-targeted proteins in Arabidopsis and rice points to a similar pattern of gene-family evolution
-
Morgante CV, Rodrigues RA, Marbach PA, Borgonovi CM, Moura DS, et al. (2009) Conservation of dual-targeted proteins in Arabidopsis and rice points to a similar pattern of gene-family evolution. Mol Genet Genomics 281: 525-538.
-
(2009)
Mol Genet Genomics
, vol.281
, pp. 525-538
-
-
Morgante, C.V.1
Rodrigues, R.A.2
Marbach, P.A.3
Borgonovi, C.M.4
Moura, D.S.5
-
11
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
The Arabidopsis Genome Initiative
-
The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
12
-
-
33646861792
-
MultiLoc: Prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition
-
Hoglund A, Donnes P, Blum T, Adolph HW, Kohlbacher O (2006) MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition. Bioinformatics 22: 1158-1165.
-
(2006)
Bioinformatics
, vol.22
, pp. 1158-1165
-
-
Hoglund, A.1
Donnes, P.2
Blum, T.3
Adolph, H.W.4
Kohlbacher, O.5
-
13
-
-
0030996742
-
Match-Box_server: A multiple sequence alignment tool placing emphasis on reliability
-
Depiereux E, Baudoux G, Briffeuil P, Reginster I, De Bolle X, et al. (1997) Match-Box_server: a multiple sequence alignment tool placing emphasis on reliability. Comput Appl Biosci 13: 249-256.
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 249-256
-
-
Depiereux, E.1
Baudoux, G.2
Briffeuil, P.3
Reginster, I.4
de Bolle, X.5
-
14
-
-
0033985080
-
GHKL, an emergent ATPase/kinase superfamily
-
Dutta R, Inouye M (2000) GHKL, an emergent ATPase/kinase superfamily. Trends Biochem Sci 25: 24-28.
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 24-28
-
-
Dutta, R.1
Inouye, M.2
-
15
-
-
0032032797
-
Eukaryotic DNA topoisomerase IIβ
-
Austin CA, Marsh KL (1998) Eukaryotic DNA topoisomerase IIβ. BioEssays 20: 215-226.
-
(1998)
BioEssays
, vol.20
, pp. 215-226
-
-
Austin, C.A.1
Marsh, K.L.2
-
16
-
-
0028678214
-
Appendix II: Alignment of primary sequences of DNA topoisomerases
-
Caron PR, Wang JC (1994) Appendix II: Alignment of primary sequences of DNA topoisomerases. Adv Pharmacol 29B: 271-297.
-
(1994)
Adv Pharmacol
, vol.29 B
, pp. 271-297
-
-
Caron, P.R.1
Wang, J.C.2
-
17
-
-
33847674928
-
Modular structure of the full-length DNA gyrase B subunit revealed by small-angle X-ray scattering
-
Costenaro L, Grossmann JG, Ebel C, Maxwell A (2007) Modular structure of the full-length DNA gyrase B subunit revealed by small-angle X-ray scattering. Structure 15: 329-339.
-
(2007)
Structure
, vol.15
, pp. 329-339
-
-
Costenaro, L.1
Grossmann, J.G.2
Ebel, C.3
Maxwell, A.4
-
18
-
-
0026428621
-
Crystal structure of an N-terminal fragment of the DNA gyrase B protein
-
Wigley DB, Davies GJ, Dodson EJ, Maxwell A, Dodson G (1991) Crystal structure of an N-terminal fragment of the DNA gyrase B protein. Nature 351: 624-629.
-
(1991)
Nature
, vol.351
, pp. 624-629
-
-
Wigley, D.B.1
Davies, G.J.2
Dodson, E.J.3
Maxwell, A.4
Dodson, G.5
-
19
-
-
0032493388
-
Identification of a residue involved in transitionstate stabilization in the ATPase reaction of DNA gyrase
-
Smith CV, Maxwell A (1998) Identification of a residue involved in transitionstate stabilization in the ATPase reaction of DNA gyrase. Biochemistry 37: 9658-9667.
-
(1998)
Biochemistry
, vol.37
, pp. 9658-9667
-
-
Smith, C.V.1
Maxwell, A.2
-
20
-
-
0042622380
-
SWISS-MODEL: An automated protein homology-modeling server
-
Schwede T, Kopp J, Guex N, Peitsch MC (2003) SWISS-MODEL: An automated protein homology-modeling server. Nucleic Acids Res 31: 3381-3385.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3381-3385
-
-
Schwede, T.1
Kopp, J.2
Guex, N.3
Peitsch, M.C.4
-
21
-
-
0042622252
-
ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins
-
Puntervoll P, Linding R, Gemund C, Chabanis-Davidson S, Mattingsdal M, et al. (2003) ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Res 31: 3625-3630.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3625-3630
-
-
Puntervoll, P.1
Linding, R.2
Gemund, C.3
Chabanis-Davidson, S.4
Mattingsdal, M.5
-
22
-
-
85047671736
-
The SANT domain: A putative DNAbinding domain in the SWI-SNF and ADA complexes, the transcriptional corepressor N-CoR and TFIIIB
-
Aasland R, Stewart AF, Gibson T (1996) The SANT domain: a putative DNAbinding domain in the SWI-SNF and ADA complexes, the transcriptional corepressor N-CoR and TFIIIB. Trends Biochem Sci 21: 87-88.
-
(1996)
Trends Biochem Sci
, vol.21
, pp. 87-88
-
-
Aasland, R.1
Stewart, A.F.2
Gibson, T.3
-
23
-
-
34247390658
-
Structural and functional differences of SWIRM domain subtypes
-
Yoneyama M, Tochio N, Umehara T, Koshiba S, Inoue M, et al. (2007) Structural and functional differences of SWIRM domain subtypes. J Mol Biol 369: 222-238.
-
(2007)
J Mol Biol
, vol.369
, pp. 222-238
-
-
Yoneyama, M.1
Tochio, N.2
Umehara, T.3
Koshiba, S.4
Inoue, M.5
-
24
-
-
2342501846
-
Development and evaluation of an Arabidopsis whole genome Affymetrix probe array
-
Redman JC, Haas BJ, Tanimoto G, Town CD (2004) Development and evaluation of an Arabidopsis whole genome Affymetrix probe array. Plant J 38: 545-561.
-
(2004)
Plant J
, vol.38
, pp. 545-561
-
-
Redman, J.C.1
Haas, B.J.2
Tanimoto, G.3
Town, C.D.4
-
25
-
-
27244438560
-
Gene-expression analysis and network discovery using Genevestigator
-
Zimmermann P, Hennig L, Gruissem W (2005) Gene-expression analysis and network discovery using Genevestigator. Trends Plant Sci 10: 407-409.
-
(2005)
Trends Plant Sci
, vol.10
, pp. 407-409
-
-
Zimmermann, P.1
Hennig, L.2
Gruissem, W.3
-
28
-
-
0035999895
-
Synchronous Arabidopsis suspension cultures for analysis of cell-cycle gene activity
-
Menges M, Murray JA (2002) Synchronous Arabidopsis suspension cultures for analysis of cell-cycle gene activity. Plant J 30: 203-212.
-
(2002)
Plant J
, vol.30
, pp. 203-212
-
-
Menges, M.1
Murray, J.A.2
-
29
-
-
0023005632
-
Nalidixic acidresistant mutations of the gyrB gene of Escherichia coli
-
Yamagishi J, Yoshida H, Yamyoshi M, Nakamura S (1986) Nalidixic acidresistant mutations of the gyrB gene of Escherichia coli. Mol Gen Genet 204: 367-373.
-
(1986)
Mol Gen Genet
, vol.204
, pp. 367-373
-
-
Yamagishi, J.1
Yoshida, H.2
Yamyoshi, M.3
Nakamura, S.4
-
30
-
-
4444363101
-
Overexpression and purification of bacterial DNA gyrase
-
In: Bjornsti M-A, Osheroff N, eds., TotowaNew Jersey: Humana Press
-
Maxwell A, Howells AJ (1999) Overexpression and purification of bacterial DNA gyrase. In: Bjornsti M-A, Osheroff N, eds. DNA Topoisomerase Protocols I DNA Topology and Enzymes. TotowaNew Jersey: Humana Press. pp 135-144.
-
(1999)
DNA Topoisomerase Protocols I DNA Topology and Enzymes
, pp. 135-144
-
-
Maxwell, A.1
Howells, A.J.2
-
31
-
-
37849040260
-
BIN4, a novel component of the plant DNA topoisomerase VI complex, is required for endoreduplication in Arabidopsis
-
Breuer C, Stacey NJ, West CE, Zhao Y, Chory J, et al. (2007) BIN4, a novel component of the plant DNA topoisomerase VI complex, is required for endoreduplication in Arabidopsis. Plant Cell 19: 3655-3668.
-
(2007)
Plant Cell
, vol.19
, pp. 3655-3668
-
-
Breuer, C.1
Stacey, N.J.2
West, C.E.3
Zhao, Y.4
Chory, J.5
-
32
-
-
0028138773
-
Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices
-
Ogata K, Morikawa S, Nakamura H, Sekikawa A, Inoue T, et al. (1994) Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices. Cell 79: 639-648.
-
(1994)
Cell
, vol.79
, pp. 639-648
-
-
Ogata, K.1
Morikawa, S.2
Nakamura, H.3
Sekikawa, A.4
Inoue, T.5
-
33
-
-
0020554566
-
Regulation of the genes for E. coli DNA gyrase: Homeostatic control of DNA supercoiling
-
Menzel R, Gellert M (1983) Regulation of the genes for E. coli DNA gyrase: homeostatic control of DNA supercoiling. Cell 34: 105-113.
-
(1983)
Cell
, vol.34
, pp. 105-113
-
-
Menzel, R.1
Gellert, M.2
-
35
-
-
33749134234
-
High-throughput assays for DNA gyrase and other topoisomerases
-
Maxwell A, Burton NP, O'Hagan N (2006) High-throughput assays for DNA gyrase and other topoisomerases. Nucleic Acids Res 34: e104.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Maxwell, A.1
Burton, N.P.2
O'Hagan, N.3
|