Molecular phylogeny of the small ermine moth genus Yponomeuta (lepidoptera, yponomeutidae) in the Palaearctic

PLoS ONE

Volumn 5, Issue 3, 2010, Pages

  Turner, Hubert ^a,b   Lieshout, Niek ^a   Van Ginkel, Wil E ^a   Menken, Steph B J ^a  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

^b NATURALIS BIODIVERSITY CENTER   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME C OXIDASE; CYTOCHROME C OXIDASE SUBUNIT II; RNA 16S; SPACER DNA;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; DNA SEQUENCE; GENETICS; GEOGRAPHY; INSECT; LEPIDOPTERA; MOTH; PHYLOGENY; SPECIES DIFFERENCE; STATISTICAL MODEL;

ANIMALS; BAYES THEOREM; DNA, INTERGENIC; ELECTRON TRANSPORT COMPLEX IV; GEOGRAPHY; INSECTS; LEPIDOPTERA; LIKELIHOOD FUNCTIONS; MODELS, GENETIC; MOTHS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 79952116700     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0009933     Document Type: Article

References (62)

1. Ehrlich P, Raven P (1964) Butterflies and plants: a study in coevolution. Evolution 18: 586-608.
2. Bernays EA, Chapman RF (1994) Host-Plant Selection by Phytophagous Insects. New York: Chapman & Hall.
3. Kelley ST, Farrell BD (1998) Is specialization a dead end? The phylogeny of host use in Dendroctonus bark beetles (Scolytidae). Evolution 52: 1731-1743.
4. Jermy T (1984) Evolution of insect host plant relationships. Am Nat 124: 609-630.
5. Menken SBJ (1996) Pattern and process in the evolution of insect-plant associations: Yponomeuta as an example. Entomol Exp Appl 80: 297-305.
6. Pellmyr O, Leebens-Mack J (1999) Forty million years of mutualism: evidence for Eocene origin of the yucca-yucca moth association. Proc Natl Acad Sci USA 96: 9178-9183.
7. Farrell B (2001) Evolutionary assembly of the milkweed fauna: cytochrome oxidase I and the age of Tetraopes beetles. Mol Phylogen Evol 18: 467-468.
8. Jermy T (1993) Evolution of insect-plant relationships: a devil's advocate approach. Entomol Exp Appl 66: 3-12.
9. Menken SBJ, Roessingh P (1998) Evolution of insect-plant associations: sensory perception and receptor modifications direct food specialization and host shifts in phytophagous insects. In: Howard D, Berlocher SH, eds. Endless Forms. Oxford: Oxford University Press. pp 145-156.
10. McKenna DD, Sequira AS, Marvaldi AE, Farrell BD (2009) Temporal lags and overlap in the diversification of weevils and flowering plants. Proc Natl Acad Sci USA 106: 7083-7088.
11. Diehl SR, Bush GL (1984) An evolutionary and applied perspective of insect biotypes. Annu Rev Entomol 29: 471-504.
12. Moriuti S (1977) Fauna Japonica. Yponomeutidae s. lat. (Insecta: Lepidoptera). Tokyo: Keigaku Publishing Co.
13. Gershenson ZS, Ulenberg SA (1998) The Yponomeutidae (Lepidoptera) of the World Exclusive of the Americas. Amsterdam: North-Holland.
14. Roessingh P (1989) The trail following behaviour of Yponomeuta cagnagellus. Entomol Exp Appl 51: 49-57.
15. Herrebout WM, Kuyten PJ, Wiebes JT (1976) Small ermine moths and their host relationships. Symp Biol Hungary 16: 91-94.
16. Menken SBJ, Herrebout WM, Wiebes JT (1992) Small ermine moths (Yponomeuta): their host relations and evolution. Annu Rev Entomol 37: 41-66.
17. Southwood TRE (1996) Insect-plant relations: overview from the symposium. Entomol Exp Appl 80: 320-324.
18. Roessingh P, Hora KH, Fung SY, Peltenburg A, Menken SBJ (2000) Host acceptance behaviour of the small ermine moth Yponomeuta cagnagellus: larvae and adults use different stimuli. Chemoecology 10: 41-47.
19. Bakker A, Roessingh P, Menken SBJ (2008) Sympatric speciation in Yponomeuta: no evidence for host plant fidelity. Entomol Exp Appl 128: 240-247.
20. Cossentine JE, Kuhlmann U (2000) Status of Ageniaspis fuscicollis (Hymenoptera: Encyrtidae), an introduced parasitoid of the apple ermine moth (Lepidoptera: Yponomeutidae). Can Entomol 132: 685-689.
21. Ulenberg SA (2009) Phylogeny of the Yponomeuta species (Lepidoptera, Yponomeutidae) and the history of their host plant associations. Tijdschr Entomol 152: 187-207.
22. Povel GDE (1987) Pattern detection within the Yponomeuta padellus-complex of the European small ermine moths (Lepidoptera, Yponomeutidae). Proc K Ned Akad C Biol 90: 367-386.
23. Sperling FAH, Landry J-F, Hickey DA (1995) DNA-based identification of introduced ermine moth species in North America (Lepidoptera: Yponomeutidae). Ann Entomol Soc Am 88: 155-162.
24. Menken SBJ (1982) Biochemical genetics and systematics of small ermine moths. Z Zool Syst Evol 20: 131-143.
25. Rokas A, Atkinson RJ, Brown GS, West SA, Stone GN (2001) Understanding patterns of genetic diversity in the oak gallwasp Biorhiza pallida: demographic history or a Wolbachia selective sweep? Heredity 87: 294-304.
26. Kluge AG (1989) A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Syst Zool 38: 7-25.
27. Harrison RG, Rand DM, Wheeler WC (1987) Mitochondrial DNA variation in field crickets across a narrow hybrid zone. Mol Biol Evol 4: 144-158.
28. White TJ, Bruns T, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky J, White TJ, eds. PCR Protocols: A Guide to Methods and Applications. New York: Academic Press. pp 315-322.
29. Clary DO, Wolstenholme DR (1985) The mitochondrial DNA molecule of Drosophila yakuba: nucleotide sequence, gene organisation, and genetic code. J Mol Evol 22: 252-271.
30. Brown JM, Pellmyr O, Thompson JN, Harrison RG (1994) Phylogeny of Greya (Lepidoptera: Proxidae), based on nucleotide sequence variation in mitochondrial cytochrome oxydase I and II: congruence with morphological data. Mol Biol Evol 11: 128-141.
31. Crozier RH, Crozier YC, Mackinlay AG (1989) The CO-I and CO-II region of honeybee mitochondrial DNA: evidence for variation in insect mitochondrial evolutionary rates. Mol Biol Evol 6: 399-411.
32. Genetics Computer Group (1991) Program manual for the GCG package, version 7. Madison, WI.
33. Xiong B, Kocher TD (1990) Comparison of mitochondrial DNA sequences of seven morphospecies of black flies (Diptera: Simuliidae). Genome 34: 3006-3011.
34. Saikki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, et al. (1988) Primerdirected enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239: 487-491.
35. Thompson JD, Gibson TJ, Plewniak F, Jeannmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment by quality analysis tools. Nucl Acids Res 24: 4876-4882.
36. Jeanmougin F, Thompson JD, Gouy M, Higgins DG, Gibson TJ (1998) Multiple sequence alignment with Clustal X. Trends Biochem Sci 23: 403-405.
37. Buckley TR, Simon C, Flook PK, Misof B (2000) Secondary structure and conserved motifs of the frequently sequenced domains IV and V of the insect mitochondrial large subunit rRNA gene. Insect Mol Biol 9: 565-580.
38. Wheeler WC, Honeycutt RL (1988) Paired sequence difference in ribosomal RNAs: evolutionary and phylogenetic implications. Mol Biol Evol 5: 90-96.
39. Teasdale BW, West A, Klein AS, Mathieson AC (2009) Distribution and evolution of variable group-I introns in the small ribosomal subunit of North Atlantic Porphyra (Bangiales, Rhodophyta). Eur J Phycol 44: 171-182.
40. Swofford DL (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4. Sunderland, MA: Sinauer Associates.
41. Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
42. Stamatakis A, Hoover P, Rougemont J (2008) A rapid bootstrap algorithm for the RAxML web servers. Syst Biol 57: 758-771.
43. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
44. Ronquist F, Huelsenbeck JP (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
45. Wilgenbusch JC, Warren DL, Swofford DL AWTY: a system for graphical exploration of MCMC convergence in Bayesian phylogenetic inference. http://ceb.csit.fsu.edu/awty.
46. Nylander JAA, Wilgenbusch JC, Warren DL, Swofford DL (2008) AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24: 581-583.
47. Farris JS, Källersjö M, Kluge AG, Bult C (1994) Testing significance of incongruence. Cladistics 10: 315-319.
48. Farris JS, Källersjö M, Kluge AG, Bult C (1995) Constructing a significance test for incongruence. Syst Biol 44: 570-572.
49. Chen W-J, Bonillo C, Lecointre G (2003) Repeatability of clades as a criterion of reliability: a case study for molecular phylogeny of Acanthomorpha (Teleostei) with a larger number of taxa. Mol Phylogen Evol 26: 262-288.
50. Hillis DM, Bull JJ (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42: 182-192.
51. Dowton M, Austin AD (2002) Increased congruence does not necessarily indicate increased phylogenetic accuracy: the behavior of the incongruence length difference test in mixed-model analyses. Syst Biol 51: 19-31.
52. Yoder AD, Irwin JA, Payseur BA (2001) Failure of the ILD to determine data combinability for slow loris phylogeny. Syst Biol 50: 408-424.
53. Cunningham CW (1997) Can three incongruence tests predict when data should be combined? Mol Biol Evol 14: 733-740.
54. Dolphin K, Belshaw R, Orme CDL, Quicke DLJ (2000) Noise and incongruence: interpreting results of the incongruence length difference test. Mol Phylogen Evol 17: 401-406.
55. Lee MSY (2001) Uninformative characters and apparent conflict between molecules and morphology. Mol Biol Evol 18: 676-680.
56. Darlu P, Lecointre G (2002) When does the incongruence length difference test fail? Mol Biol Evol 19: 432-437.
57. Roessingh P, Sen Xu, Menken SBJ (2007) Olfactory receptors on the maxillary palps of small ermine moth larvae: evolutionary history of benzaldehyde sensitivity. J Comp Physiol 193: 635-647.
58. Menken SBJ (1987) Is the extremely low heterozygosity level in Yponomeuta rorellus caused by bottlenecks? Evolution 41: 630-637.
59. Löfstedt C, Herrebout WM, Menken SBJ (1991) Sex pheromones and their potential role in the evolution of reproductive isolation in small ermine moths (Yponomeutidae). Chemoecology 2: 20-28.
60. Ree, RH, Smith SA (2008) Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Syst Biol 57: 4-14.
61. Percy DM, Page RDM, Cronck QCB (2004) Plant-insect interactions: doubledating associated insect and plant lineages reveals asynchronous radiations. Syst Biol 53: 120-127.
62. Kölsch G, Pedersen BV (2008) Molecular phylogeny of reed beetles (Col., Chrysomelidae, Donaciinae): the signature of ecological specialization and geographical isolation. Mol Phylogen Evol 48: 936-952.