Epigenetic dynamics across the cell cycle

Essays in Biochemistry

Volumn 48, Issue , 2010, Pages 107-120

  Kheir, Tony Bou ^a   Lund, Anders H ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

MAMMALIA;

ANIMAL; CELL CYCLE; GENETIC EPIGENESIS; GENETICS; HUMAN; PROTEIN PROCESSING; REVIEW;

ANIMALS; CELL CYCLE; EPIGENESIS, GENETIC; HUMANS; PROTEIN PROCESSING, POST-TRANSLATIONAL;

EID: 79952112091     PISSN: 00711365     EISSN: None     Source Type: Journal    
DOI: 10.1042/BSE0480107     Document Type: Article

References (52)

1. Morgan, D.O. (2006) The Cell Cycle: Principles of Control, New Science Press, Oxford
2. Bernstein, B.E., Meissner, A. and Lander, E.S. (2007) The mammalian epigenome. Cell 128, 669-681
3. Sanchez, R. and Zhou, M.M. (2009) The role of human bromodomains in chromatin biology and gene transcription. Curr. Opin. Drug Discov. Dev. 12, 659-665
4. Allis, C.D., Jenuwein, T. and Reinberg, D. (2007) Epigenetics, Cold Spring Harbor Laboratory Press, Cold Spring Harbor
5. Sanchez Mde, L., Caro, E., Desvoyes, B., Ramirez-Parra, E. and Gutierrez, C. (2008) Chromatin dynamics during the plant cell cycle. Semin. Cell Dev. Biol. 19, 537-546
6. Robertson, K.D., Keyomarsi, K., Gonzales, F.A., Velicescu, M. and Jones, P.A. (2000) Differential mRNA expression of the human DNA methyltransferases (DNMTs) 1, 3a and 3b during the G0/ G1 to S phase transition in normal and tumor cells. Nucleic Acids Res. 28, 2108-2113
7. Brown, S.E., Fraga, M.F., Weaver, I.C., Berdasco, M. and Szyf, M. (2007) Variations in DNA methylation patterns during the cell cycle of HeLa cells. Epigenetics 2, 54-65
8. Torrisani, J., Unterberger, A., Tendulkar, S.R., Shikimi, K. and Szyf, M. (2007) AUF1 cell cycle variations define genomic DNA methylation by regulation of DNMT1 mRNA stability. Mol. Cell. Biol. 27, 395-410
9. Zhang, H.S. and Dean, D.C. (2001) Rb-mediated chromatin structure regulation and transcriptional repression. Oncogene 20, 3134-3138
10. Macaluso, M., Montanari, M. and Giordano, A. (2006) Rb family proteins as modulators of gene expression and new aspects regarding the interaction with chromatin remodeling enzymes. Oncogene 25, 5263-5267
11. Takahashi, Y., Rayman, J.B. and Dynlacht, B.D. (2000) Analysis of promoter binding by the E2F and pRB families in vivo: distinct E2F proteins mediate activation and repression. Genes Dev. 14, 804-816
12. Taubert, S., Gorrini, C., Frank, S.R., Parisi, T., Fuchs, M., Chan, H.M., Livingston, D.M. and Amati, B. (2004) E2F-dependent histone acetylation and recruitment of the Tip60 acetyltransferase complex to chromatin in late G1. Mol. Cell. Biol. 24, 4546-4556
13. McManus, K.J. and Hendzel, M.J. (2006) The relationship between histone H3 phosphorylation and acetylation throughout the mammalian cell cycle. Biochem. Cell Biol. 84, 640-657
14. Vandel, L., Nicolas, E., Vaute, O., Ferreira, R., Ait-Si-Ali, S. and Trouche, D. (2001) Transcriptional repression by the retinoblastoma protein through the recruitment of a histone methyltransferase. Mol. Cell. Biol. 21, 6484-6494
15. Gatta, R. and Mantovani, R. (2008) NF-Y substitutes H2A-H2B on active cell-cycle promoters: recruitment of CoREST-KDM1 and fine-tuning of H3 methylations. Nucleic Acids Res. 36, 6592-6607
16. Rice, J.C., Nishioka, K., Sarma, K., Steward, R., Reinberg, D. and Allis, C.D. (2002) Mitotic-specific methylation of histone H4 Lys20 follows increased PR-Set7 expression and its localization to mitotic chromosomes. Genes Dev. 16, 2225-2230
17. Groth, A., Rocha, W., Verreault, A. and Almouzni, G. (2007) Chromatin challenges during DNA replication and repair. Cell 128, 721-733
18. Scharf, A.N., Barth, T.K. and Imhof, A. (2009) Establishment of histone modifications after chromatin assembly. Nucleic Acids Res. 37, 5032-5040
19. Strahl, B.D. and Allis, C.D. (2000) The language of covalent histone modifications. Nature 403, 41-45
20. Rampakakis, E., Di Paola, D., Chan, M.K. and Zannis-Hadjopoulos, M. (2009) Dynamic changes in chromatin structure through post-translational modifications of histone H3 during replication origin activation. J. Cell. Biochem. 108, 400-407
21. Probst, A.V., Dunleavy, E. and Almouzni, G. (2009) Epigenetic inheritance during the cell cycle. Nat. Rev. Mol. Cell Biol. 10, 192-206
22. Hendzel, M.J., Wei, Y., Mancini, M.A., Van Hooser, A., Ranalli, T., Brinkley, B.R., Bazett-Jones, D.P. and Allis, C.D. (1997) Mitosis-specific phosphorylation of histone H3 initiates primarily within pericentromeric heterochromatin during G2 and spreads in an ordered fashion coincident with mitotic chromosome condensation. Chromosoma 106, 348-360
23. Koshland, D. and Strunnikov, A. (1996) Mitotic chromosome condensation. Annu. Rev. Cell Dev. Biol. 12, 305-333
24. Hayashi-Takanaka, Y., Yamagata, K., Nozaki, N. and Kimura, H. (2009) Visualizing histone modifications in living cells: spatiotemporal dynamics of H3 phosphorylation during interphase. J. Cell Biol. 187, 781-790
25. Bonenfant, D., Towbin, H., Coulot, M., Schindler, P., Mueller, D.R. and van Oostrum, J. (2007) Analysis of dynamic changes in post-translational modifications of human histones during cell cycle by mass spectrometry. Mol. Cell. Proteomics 6, 1917-1932
26. Kang, T.H., Park, D.Y., Choi, Y.H., Kim, K.J., Yoon, H.S. and Kim, K.T. (2007) Mitotic histone H3 phosphorylation by vaccinia-related kinase 1 in mammalian cells. Mol. Cell. Biol. 27, 8533-8546
27. Barber, C.M., Turner, F.B., Wang, Y., Hagstrom, K., Taverna, S.D., Mollah, S., Ueberheide, B., Meyer, B.J., Hunt, D.F., Cheung, P. and Allis, C.D. (2004) The enhancement of histone H4 and H2A serine 1 phosphorylation during mitosis and S-phase is evolutionarily conserved. Chromosoma 112, 360-371
28. Vaquero, A., Scher, M.B., Lee, D.H., Sutton, A., Cheng, H.L., Alt, F.W., Serrano, L., Sternglanz, R. and Reinberg, D. (2006) SirT2 is a histone deacetylase with preference for histone H4 Lys16 during mitosis. Genes Dev. 20, 1256-1261
29. Shogren-Knaak, M., Ishii, H., Sun, J.M., Pazin, M.J., Davie, J.R. and Peterson, C.L. (2006) Histone H4-K16 acetylation controls chromatin structure and protein interactions. Science 311, 844-847
30. Li, Y., Kao, G.D., Garcia, B.A., Shabanowitz, J., Hunt, D.F., Qin, J., Phelan, C. and Lazar, M.A. (2006) A novel histone deacetylase pathway regulates mitosis by modulating Aurora B kinase activity. Genes Dev. 20, 2566-2579
31. Pesavento, J.J., Yang, H., Kelleher, N.L. and Mizzen, C.A. (2008) Certain and progressive methylation of histone H4 at lysine 20 during the cell cycle. Mol. Cell. Biol. 28, 468-486
32. McManus, K.J., Biron, V.L., Heit, R., Underhill, D.A. and Hendzel, M.J. (2006) Dynamic changes in histone H3 lysine 9 methylations: identification of a mitosis-specific function for dynamic methylation in chromosome congression and segregation. J. Biol. Chem. 281, 8888-8897
33. Valls, E., Sanchez-Molina, S. and Martinez-Balbas, M.A. (2005) Role of histone modifications in marking and activating genes through mitosis. J. Biol. Chem. 280, 42592-42600
34. Joo, H.Y., Zhai, L., Yang, C., Nie, S., Erdjument-Bromage, H., Tempst, P., Chang, C. and Wang, H. (2007) Regulation of cell cycle progression and gene expression by H2A deubiquitination. Nature 449, 1068-1072
35. Ogawa, H., Ishiguro, K., Gaubatz, S., Livingston, D.M. and Nakatani, Y. (2002) A complex with chromatin modifiers that occupies E2F-and Myc-responsive genes in G0 cells. Science 296, 1132-1136
36. Deshpande, A.M., Akunowicz, J.D., Reveles, X.T., Patel, B.B., Saria, E.A., Gorlick, R.G., Naylor, S.L., Leach, R.J. and Hansen, M.F. (2007) PHC3, a component of the hPRC-H complex, associates with E2F6 during G0 and is lost in osteosarcoma tumors. Oncogene 26, 1714-1722
37. Blais, A., van Oevelen, C.J., Margueron, R., Acosta-Alvear, D. and Dynlacht, B.D. (2007) Retinoblastoma tumor suppressor protein-dependent methylation of histone H3 lysine 27 is associated with irreversible cell cycle exit. J. Cell Biol. 179, 1399-1412
38. Sen, G.L., Reuter, J.A., Webster, D.E., Zhu, L. and Khavari, P.A. (2010) DNMT1 maintains progenitor function in self-renewing somatic tissue. Nature 463, 563-567
39. Fraga, M.F., Ballestar, E., Villar-Garea, A., Boix-Chornet, M., Espada, J., Schotta, G., Bonaldi, T., Haydon, C., Ropero, S., Petrie, K. et al. (2005) Loss of acetylation at Lys16 and trimethylation at Lys20 of histone H4 is a common hallmark of human cancer. Nat. Genet. 37, 391-400
40. Dai, J., Sultan, S., Taylor, S.S. and Higgins, J.M. (2005) The kinase haspin is required for mitotic histone H3 Thr3 phosphorylation and normal metaphase chromosome alignment. Genes Dev. 19, 472-488
41. Polioudaki, H., Markaki, Y., Kourmouli, N., Dialynas, G., Theodoropoulos, P.A., Singh, P.B. and Georgatos, S.D. (2004) Mitotic phosphorylation of histone H3 at threonine 3. FEBS Lett. 560, 39-44
42. Milne, T.A., Briggs, S.D., Brock, H.W., Martin, M.E., Gibbs, D., Allis, C.D. and Hess, J.L. (2002) MLL targets SET domain methyltransferase activity to Hox gene promoters. Mol. Cell 10, 1107-1117
43. Tachibana, M., Sugimoto, K., Fukushima, T. and Shinkai, Y. (2001) Set domain-containing protein, G9a, is a novel lysine-preferring mammalian histone methyltransferase with hyperactivity and specific selectivity to lysines 9 and 27 of histone H3. J. Biol. Chem. 276, 25309-25317
44. Ruchaud, S., Carmena, M. and Earnshaw, W.C. (2007) Chromosomal passengers: conducting cell division. Nat. Rev. Mol. Cell Biol. 8, 798-812
45. Preuss, U., Landsberg, G. and Scheidtmann, K.H. (2003) Novel mitosis-specific phosphorylation of histone H3 at Thr11 mediated by Dlk/ZIP kinase. Nucleic Acids Res. 31, 878-885
46. Schiltz, R.L., Mizzen, C.A., Vassilev, A., Cook, R.G., Allis, C.D. and Nakatani, Y. (1999) Overlapping but distinct patterns of histone acetylation by the human coactivators p300 and PCAF within nucleosomal substrates. J. Biol. Chem. 274, 1189-1192
47. Daujat, S., Bauer, U.M., Shah, V., Turner, B., Berger, S. and Kouzarides, T. (2002) Crosstalk between CARM1 methylation and CBP acetylation on histone H3. Curr. Biol. 12, 2090-2097
48. Goto, H., Tomono, Y., Ajiro, K., Kosako, H., Fujita, M., Sakurai, M., Okawa, K., Iwamatsu, A., Okigaki, T., Takahashi, T. and Inagaki, M. (1999) Identification of a novel phosphorylation site on histone H3 coupled with mitotic chromosome condensation. J. Biol. Chem. 274, 25543-25549
49. Brown, M.A., Sims, 3rd, R.J., Gottlieb, P.D. and Tucker, P.W. (2006) Identification and characterization of Smyd2: a split SET/MYND domain-containing histone H3 lysine 36-specific methyltransferase that interacts with the Sin3 histone deacetylase complex. Mol. Cancer 5, 26
50. Kruhlak, M.J., Hendzel, M.J., Fischle, W., Bertos, N.R., Hameed, S., Yang, X.J., Verdin, E. and Bazett-Jones, D.P. (2001) Regulation of global acetylation in mitosis through loss of histone acetyltransferases and deacetylases from chromatin. J. Biol. Chem. 276, 38307-38319
51. Chang, L., Loranger, S.S., Mizzen, C., Ernst, S.G., Allis, C.D. and Annunziato, A.T. (1997) Histones in transit: cytosolic histone complexes and diacetylation of H4 during nucleosome assembly in human cells. Biochemistry 36, 469-480
52. Turner, B.M. and Fellows, G. (1989) Specific antibodies reveal ordered and cell-cycle-related use of histone-H4 acetylation sites in mammalian cells. Eur. J. Biochem. 179, 131-139