Coherent control of the isomerization of retinal in bacteriorhodopsin in the high intensity regime

Journal of Chemical Physics

Volumn 134, Issue 8, 2011, Pages

  Prokhorenko, Valentyn I ^a,b   Halpin, Alexei ^a,b   Johnson, Philip J M ^a,b   Miller, R J Dwayne ^a,b   Brown, Leonid S ^c  

^a UNIVERSITY OF HAMBURG   (Germany)

^b UNIVERSITY OF TORONTO   (Canada)

^c UNIVERSITY OF GUELPH   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MOLECULE; COHERENT CONTROL; COUPLED STATE; DECOHERENCE EFFECTS; ELECTRONIC TRANSITION; EXCITATION LEVELS; EXCITATION PULSE; EXPERIMENTAL DETERMINATION; FIELD AMPLITUDES; FIELD STUDIES; FLUENCES; HIGH INTENSITY; ISOMERIZATION KINETICS; ISOMERIZATION REACTION; ISOMERIZATION YIELDS; LOW-INTENSITY; MULTIPHOTONS; PHASE RELATIONSHIPS; PHOTOPHYSICS; PHOTOPRODUCTS; QUANTUM COHERENCE EFFECTS; QUANTUM INTERFERENCE; QUANTUM INTERFERENCE EFFECTS; REACTION COORDINATES; RED SHIFT; RELATIVE IMPORTANCE; STRONG FIELD; TRANSFORM-LIMITED PULSE; TRANSIENT SPECTRA;

ISOMERS; OPHTHALMOLOGY; PHOTOEXCITATION; QUANTUM INTERFERENCE DEVICES; QUANTUM THEORY; REACTION KINETICS;

ISOMERIZATION;

BACTERIORHODOPSIN; RETINAL;

ARTICLE; CHEMISTRY; EQUIPMENT DESIGN; HALOBACTERIUM SALINARUM; INSTRUMENTATION; ISOMERISM; KINETICS; PHOTOCHEMISTRY; PHOTON; SPECTROPHOTOMETRY;

BACTERIORHODOPSINS; EQUIPMENT DESIGN; HALOBACTERIUM SALINARUM; ISOMERISM; KINETICS; PHOTOCHEMICAL PROCESSES; PHOTONS; RETINALDEHYDE; SPECTROPHOTOMETRY;

EID: 79952099236     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3554743     Document Type: Article

References (40)

1. V. I. Prokhorenko, A. M. Nagy, and R. J. D. Miller, J. Chem. Phys. 122, 184502 (2005). 10.1063/1.1886750 (Pubitemid 40682827)
2. J. Hauer, T. Buckup, and M. Motzkus, J. Chem. Phys. 125, 061101 (2006). 10.1063/1.2243273
3. P. van der Walle, M. T. W. Milder, L. Kuipers, and J. L. Herek, Proc. Natl. Acad. Sci. U.S.A. 106, 7714 (2009). 10.1073/pnas.0901833106
4. V. I. Prokhorenko, A. M. Nagy, S. A. Waschuk, L. S. Brown, R. R. Birge, and R. J. D. Miller, Science 313, 1257 (2006). 10.1126/science.1130747 (Pubitemid 44330943)
5. J. K. Lanyi, Biochim. Biophys. Acta 1757, 1012 (2006). 10.1016/j.bbabio.2005.11.003 (Pubitemid 44427748)
6. V. I. Prokhorenko, A. M. Nagy, L. S. Brown, and R. J. D. Miller, Chem. Phys. 341, 296 (2007). 10.1016/j.chemphys.2007.07.031
7. G. Katz, M. A. Ratner, and R. Kosloff, New J. Phys. 12, 015003 (2010). 10.1088/1367-2630/12/1/015003
8. G. Cerullo, C. J. Bardeen, Q. Wang, and C. V. Shank, Chem. Phys. Lett. 262, 362 (1996). 10.1016/0009-2614(96)01092-5
9. C. J. Bardeen, V. V. Yakovlev, J. A. Squier, and K. R. Wilson, J. Am. Chem. Soc. 120, 13023 (1998). 10.1021/ja9824627 (Pubitemid 29024062)
10. O. Nahmias, O. Bismuth, O. Shoshana, and S. Ruhman, J. Phys. Chem. A 83, 5013 (2005). 10.1021/jp052313s (Pubitemid 41396231)
11. D. J. Tannor and S. A. Rice, J. Chem. Phys. 83, 5013 (1985). 10.1063/1.449767
12. B. D. Fainberg and V. A. Gorbunov, J. Phys. Chem. A 111, 9560 (2007). 10.1021/jp0728611 (Pubitemid 47554243)
13. D. Gelman and R. Kosloff, J. Chem. Phys. 123, 234506 (2005). 10.1063/1.2136155 (Pubitemid 41828987)
14. M. Greenfield, S. D. McGrane, and D. S. Moore, J. Phys. Chem. A 113, 2333 (2009). 10.1021/jp801758v
15. A. C. Florean, D. Cardoza, J. L. White, J. K. Lanyi, R. J. Sension, and P. H. Bucksbaum, Proc. Natl. Acad. Sci. U.S.A. 106, 10896 (2009). 10.1073/pnas.0904589106
16. K. A. Freedman and R. S. Becker, J. Am. Chem. Soc. 108, 1245 (1986). 10.1021/ja00266a020
17. Y. Koyama, K. Kubo, M. Komori, H. Yasuda, and Y. Mukai, Photochem. Photobiol. 54, 433 (1991). 10.1111/j.1751-1097.1991.tb02038.x
18. J. Tittor and D. Oesterhelt, FEBS Lett. 263, 269 (1990). 10.1016/0014-5793(90)81390-A (Pubitemid 20143004)
19. S. L. Logunov and M. A. El-Sayed, J. Phys. Chem. B 101, 6629 (1997). 10.1021/jp970955c
20. R. Trebino, K. W. DeLong, D. N. Fittinghoff, J. N. Sweetser, M. A. Krumbgel, B. A. Richman, and D. J. Kane, Rev. Sci. Instrum. 68, 3277 (1997). 10.1063/1.1148286
21. This value of 21 nJ incident energy corresponds to 12 nJ in Ref. defined as entering the region of the cell where the pump and probe pulse overlap with bR having OD 1. We report incident pulse energy, as under highly nonlinear conditions it is not possible to use linear extrapolation to estimate pulse energies within a sample cell.
22. R. Govindjee, S. P. Balashov, and T. G. Ebrey, Biophys. J. 58, 597 (1990). 10.1016/S0006-3495(90)82403-6
23. J. Czégé and L. Reinisch, Photochem. Photobiol. 53, 659 (1991). 10.1111/j.1751-1097.1991.tb08494.x
24. M. B. Masthay, D. M. Sammeth, M. C. Helvenston, C. B. Buckman, W. Y. Li, M. J. Cde-Baca, and J. T. Kofron, J. Am. Chem. Soc. 124, 3418 (2002). 10.1021/ja010116a (Pubitemid 34270384)
25. E. J. Hart and M. Anbar, The Hydrated Electron (Wiley, New York, 1970).
26. V. Calvoperez, G. S. Beddard, and J. H. Fendler, J. Phys. Chem. 85, 2316 (1981). 10.1021/j150616a004
27. J. L. Gebicki, L. Gebicka, and J. Kroh, J. Chem. Soc., Faraday Trans. 90, 3411 (1994). 10.1039/ft9949003411
28. Y. J. Lee, T. W. Kee, T. Q. Zhang, and P. Barbara, J. Phys. Chem. B 108, 3474 (2004). 10.1021/jp0373393
29. R. Katoh, J. Photochem. Photobiol. A 189, 211 (2007). 10.1016/j.jphotochem.2007.01.034
30. K. C. Hasson, F. Gai, and P. A. Anfinrud, Proc. Natl. Acad. Sci. U.S.A. 93, 15124 (1996). 10.1073/pnas.93.26.15124 (Pubitemid 27009563)
31. F. Gai, K. C. Hasson, J. C. McDonald, and P. A. Anfinrud, Science 279, 1886 (1998). 10.1126/science.279.5358.1886 (Pubitemid 28168636)
32. V. I. Prokhorenko, M. V. Melishchuk, and E. A. Tikhonov, Zh. Tekh. Fiz. 51, 955 (1981).
33. V. I. Prokhorenko, M. V. Melishchuk, and E. A. Tikhonov, Zh. Tekh. Fiz. 51, 2603 (1981).
34. 23.
35. V. I. Prokhorenko, M. V. Melishchuk, and E. A. Tikhonov, Ukr. Fiz. Zh. 30, 1480 (1985).
36. A. Yabushita and T. Kobayashi, Biophys. J. 96, 1447 (2009). 10.1016/j.bpj.2008.10.050
37. A. Piryatinski, M. Stepanov, S. Tretiak, and V. Chernyak, Phys. Rev. Lett. 95, 223001 (2005). 10.1103/PhysRevLett.95.223001 (Pubitemid 41776965)
38. A. Nagy, V. Prokhorenko, and R. J. D. Miller, Curr. Opin. Struct. Biol. 16, 654 (2006). 10.1016/j.sbi.2006.08.012 (Pubitemid 44466413)
39. K. Hoki and P. Brumer, Phys. Rev. Lett. 95, 168305 (2005). 10.1103/PhysRevLett.95.168305 (Pubitemid 41777476)
40. V. I. Prokhorenko, A. Halpin, and R. J. D. Miller, Opt. Express 17, 9764 (2009). 10.1364/OE.17.009764