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Volumn 11, Issue 2, 2011, Pages 437-441

The role of swine as " mixing vessel" for interspecies transmission of the influenza A subtype H1N1: A simultaneous Bayesian inference of phylogeny and ancestral hosts

Author keywords

Ancestral reconstruction; H1N1; Host shift; Influenza A; Phylogeny

Indexed keywords

INFLUENZA VIRUS HEMAGGLUTININ; VIRUS SIALIDASE;

EID: 79951947917     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2010.12.001     Document Type: Article
Times cited : (28)

References (47)
  • 2
    • 0016355478 scopus 로고
    • A new look at the statistical model identification
    • Akaike H. A new look at the statistical model identification. IEEE Trans. Autom. Control 1974, 19:716-723.
    • (1974) IEEE Trans. Autom. Control , vol.19 , pp. 716-723
    • Akaike, H.1
  • 3
    • 42449105765 scopus 로고    scopus 로고
    • Ancestral inference and the study of codon bias evolution: implications for molecular evolutionary analyses of the Drosophila melanogaster subgroup
    • Akashi H., Goel P., John A. Ancestral inference and the study of codon bias evolution: implications for molecular evolutionary analyses of the Drosophila melanogaster subgroup. PLoS One 2007, 2:e1065.
    • (2007) PLoS One , vol.2
    • Akashi, H.1    Goel, P.2    John, A.3
  • 4
    • 0038167001 scopus 로고    scopus 로고
    • Influenza type A in humans, mammals and birds: determinants of virus virulence, host-range and interspecies transmission
    • July
    • Baigent S.J., McCauley J.W. Influenza type A in humans, mammals and birds: determinants of virus virulence, host-range and interspecies transmission. Bioessays 2003, 25(July):657-671.
    • (2003) Bioessays , vol.25 , pp. 657-671
    • Baigent, S.J.1    McCauley, J.W.2
  • 6
    • 33646167864 scopus 로고    scopus 로고
    • A simple and robust statistical test for detecting the presence of recombination
    • April
    • Bruen T.C., Philippe H., Bryant D. A simple and robust statistical test for detecting the presence of recombination. Genetics 2006, 172(April):2665-2681.
    • (2006) Genetics , vol.172 , pp. 2665-2681
    • Bruen, T.C.1    Philippe, H.2    Bryant, D.3
  • 7
  • 9
    • 0031880429 scopus 로고    scopus 로고
    • Reconstructing ancestral character states: a critical reappraisal
    • Cunningham C.W., Omland K.E., Oakley T.H. Reconstructing ancestral character states: a critical reappraisal. Trends Ecol. Evol. 1998, 13(9):361-366.
    • (1998) Trends Ecol. Evol. , vol.13 , Issue.9 , pp. 361-366
    • Cunningham, C.W.1    Omland, K.E.2    Oakley, T.H.3
  • 11
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 13
    • 0036027825 scopus 로고    scopus 로고
    • Detection of influenza virus resistance to neuraminidase inhibitors by an enzyme inhibition assay
    • January
    • Gubareva L.V., Webster R.G., Hayden F.G. Detection of influenza virus resistance to neuraminidase inhibitors by an enzyme inhibition assay. Antiviral Res. 2002, 53(January):47-61.
    • (2002) Antiviral Res. , vol.53 , pp. 47-61
    • Gubareva, L.V.1    Webster, R.G.2    Hayden, F.G.3
  • 14
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • October
    • Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52(October):696-704.
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 17
    • 73649148059 scopus 로고    scopus 로고
    • Tracking the geographical spread of avian influenza (H5N1) with multiple phylogenetic trees
    • February
    • Hovmoller R., Alexandrov B., Hardman J., Janies D. Tracking the geographical spread of avian influenza (H5N1) with multiple phylogenetic trees. Cladistics 2010, 26(February).
    • (2010) Cladistics , vol.26
    • Hovmoller, R.1    Alexandrov, B.2    Hardman, J.3    Janies, D.4
  • 18
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • February
    • Huson D.H., Bryant D. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 2006, 23(February):254-267.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 19
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: improvement in accuracy of multiple sequence alignment
    • Katoh K., Kuma K., Toh H., Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 2005, 33:511-518.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 20
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • July
    • Katoh K., Misawa K., Kuma K., Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002, 30(July):3059-3066.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 21
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • July
    • Katoh K., Toh H. Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform. 2008, 9(July):286-298.
    • (2008) Brief Bioinform. , vol.9 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 23
    • 0034530345 scopus 로고    scopus 로고
    • Origins of the coalescent: 1974-1982
    • Kingman J.F.C. Origins of the coalescent: 1974-1982. Genetics 2000, 156(4):1461-1463.
    • (2000) Genetics , vol.156 , Issue.4 , pp. 1461-1463
    • Kingman, J.F.C.1
  • 26
    • 67449136751 scopus 로고    scopus 로고
    • The pig as a mixing vessel for influenza viruses: human and veterinary implications
    • Ma W., Kahn R.E., Richt J.A. The pig as a mixing vessel for influenza viruses: human and veterinary implications. J. Mol. Genet. Med. 2008, 3:158-166.
    • (2008) J. Mol. Genet. Med. , vol.3 , pp. 158-166
    • Ma, W.1    Kahn, R.E.2    Richt, J.A.3
  • 27
    • 0034099655 scopus 로고    scopus 로고
    • Balanced hemagglutinin and neuraminidase activities are critical for efficient replication of influenza A virus
    • Mitnaul L.J., Matrosovich M.N., Castrucci M.R., Tuzikov A.B., Bovin N.V., Kobasa D., Kawaoka Y. Balanced hemagglutinin and neuraminidase activities are critical for efficient replication of influenza A virus. J. Virol. 2000, 74(13):6015-6020.
    • (2000) J. Virol. , vol.74 , Issue.13 , pp. 6015-6020
    • Mitnaul, L.J.1    Matrosovich, M.N.2    Castrucci, M.R.3    Tuzikov, A.B.4    Bovin, N.V.5    Kobasa, D.6    Kawaoka, Y.7
  • 28
    • 79951950846 scopus 로고    scopus 로고
    • NCBI, November. Influenza virus resource. (accessed 14.06.10).
    • NCBI, 2009, November. Influenza virus resource. (accessed 14.06.10). http://www.ncbi.nlm.nih.gov/genomes/FLU/Database/multiple.cgi.
    • (2009)
  • 29
    • 27644450440 scopus 로고    scopus 로고
    • Testing hypotheses about ecological specialization using phylogenetic trees
    • October
    • Nosil P., Mooers A.O. Testing hypotheses about ecological specialization using phylogenetic trees. Evolution 2005, 59(October):2256-2263.
    • (2005) Evolution , vol.59 , pp. 2256-2263
    • Nosil, P.1    Mooers, A.O.2
  • 30
    • 9744245452 scopus 로고    scopus 로고
    • Bayesian estimation of ancestral character states on phylogenies
    • October
    • Pagel M., Meade A., Barker D. Bayesian estimation of ancestral character states on phylogenies. Syst. Biol. 2004, 53(October):673-684.
    • (2004) Syst. Biol. , vol.53 , pp. 673-684
    • Pagel, M.1    Meade, A.2    Barker, D.3
  • 31
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: phylogenetic model averaging
    • July
    • Posada D. jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25(July):1253-1256.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 32
    • 68049133064 scopus 로고    scopus 로고
    • Selection of models of DNA evolution with jModelTest
    • Posada D. Selection of models of DNA evolution with jModelTest. Methods Mol. Biol. 2009, 537:93-112.
    • (2009) Methods Mol. Biol. , vol.537 , pp. 93-112
    • Posada, D.1
  • 34
    • 12044256996 scopus 로고
    • Ancestral areas and parsimony
    • Ronquist F. Ancestral areas and parsimony. Syst. Biol. 1994, 43(2):267-274.
    • (1994) Syst. Biol. , vol.43 , Issue.2 , pp. 267-274
    • Ronquist, F.1
  • 35
    • 0028033072 scopus 로고
    • Source for influenza pandemics
    • August
    • Scholtissek C. Source for influenza pandemics. Eur. J. Epidemiol. 1994, 10(August):455-458.
    • (1994) Eur. J. Epidemiol. , vol.10 , pp. 455-458
    • Scholtissek, C.1
  • 36
    • 28944450584 scopus 로고    scopus 로고
    • Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences
    • January
    • Shapiro B., Rambaut A., Drummond A.J. Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Mol. Biol. Evol. 2006, 23(January):7-9.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 7-9
    • Shapiro, B.1    Rambaut, A.2    Drummond, A.J.3
  • 37
    • 70849132797 scopus 로고    scopus 로고
    • Evolutionary trends of A(H1N1) influenza virus hemagglutinin since 1918
    • Shen J., Ma J., Wang Q. Evolutionary trends of A(H1N1) influenza virus hemagglutinin since 1918. PLoS One 2009, 4:e7789.
    • (2009) PLoS One , vol.4
    • Shen, J.1    Ma, J.2    Wang, Q.3
  • 38
    • 0033783032 scopus 로고    scopus 로고
    • Receptor binding and membrane fusion in virus entry: the influenza hemagglutinin
    • Skehel J.J., Wiley D.C. Receptor binding and membrane fusion in virus entry: the influenza hemagglutinin. Annu. Rev. Biochem. 2000, 69:531-569.
    • (2000) Annu. Rev. Biochem. , vol.69 , pp. 531-569
    • Skehel, J.J.1    Wiley, D.C.2
  • 41
    • 31344482504 scopus 로고    scopus 로고
    • 1918 influenza: the mother of all pandemics
    • January
    • Taubenberger J.K., Morens D.M. 1918 influenza: the mother of all pandemics. Emerg. Infect. Dis. 2006, 12(January):15-22.
    • (2006) Emerg. Infect. Dis. , vol.12 , pp. 15-22
    • Taubenberger, J.K.1    Morens, D.M.2
  • 43
    • 34147132846 scopus 로고    scopus 로고
    • Mapping uncertainty and phylogenetic uncertainty in ancestral character state reconstruction: an example in the moss genus Brachytheciastrum
    • December
    • Vanderpoorten A., Goffinet B. Mapping uncertainty and phylogenetic uncertainty in ancestral character state reconstruction: an example in the moss genus Brachytheciastrum. Syst. Biol. 2006, 55(December):957-971.
    • (2006) Syst. Biol. , vol.55 , pp. 957-971
    • Vanderpoorten, A.1    Goffinet, B.2
  • 44
    • 65449188232 scopus 로고    scopus 로고
    • Jalview version 2-a multiple sequence alignment editor and analysis workbench
    • May
    • Waterhouse A.M., Procter J.B., Martin D.M., Clamp M., Barton G.J. Jalview version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 2009, 25(May):1189-1191.
    • (2009) Bioinformatics , vol.25 , pp. 1189-1191
    • Waterhouse, A.M.1    Procter, J.B.2    Martin, D.M.3    Clamp, M.4    Barton, G.J.5
  • 45
    • 79951953950 scopus 로고    scopus 로고
    • WHO, Fact Sheet No.211: Influenza (Seasonal). Tech. Rep., WHO.
    • WHO, 2009. Fact Sheet No.211: Influenza (Seasonal). Tech. Rep., WHO.
    • (2009)
  • 46
    • 0042905752 scopus 로고    scopus 로고
    • Missing data incomplete taxa, and phylogenetic accuracy
    • Wiens J.J. Missing data incomplete taxa, and phylogenetic accuracy. Syst. Biol. 2003, 52(4):528-538.
    • (2003) Syst. Biol. , vol.52 , Issue.4 , pp. 528-538
    • Wiens, J.J.1
  • 47
    • 0039363100 scopus 로고
    • Ancestral geographic states and the peril of parsimony
    • Wilson A.C., Stoneking M., Cann R.L. Ancestral geographic states and the peril of parsimony. Syst. Zool. 1991, 40(3):363-365.
    • (1991) Syst. Zool. , vol.40 , Issue.3 , pp. 363-365
    • Wilson, A.C.1    Stoneking, M.2    Cann, R.L.3


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