Phylogenetic relationships and phylogeographic patterns in Monodelphis (Didelphimorphia: Didelphidae)

Journal of Mammalogy

Volumn 92, Issue 1, 2011, Pages 121-133

  De A Carvalho, Bianca ^a,d   Oliveira, Luiz F B ^b   Langguth, Alfredo ^c   Freygang, Cristina C ^a   Ferraz, Renato S ^d   Mattevi, Margarete S ^a  

^a UNIVERSIDADE LUTERANA DO BRASIL   (Brazil)

^b FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^c FEDERAL UNIVERSITY OF PARAÍBA   (Brazil)

^d Instituto de Pesquisas Biologicas Laboratorio Central do Estado do Rio Grande do Sul (IPB LACEN RS   (Brazil)

Author keywords

Cytochrome b; Didelphidae; Interphotoreceptor retinoid binding protein; Marsupialia; Monodelphis phylogeny; Monodelphis phylogeography; South America

Indexed keywords

BIOME; CAATINGA; CERRADO; CHEMICAL BINDING; CYTOCHROME; GENETIC VARIATION; MARSUPIAL; PHYLOGENETICS; PHYLOGENY; PHYLOGEOGRAPHY; PROTEIN;

AMAZONAS [BRAZIL]; ARGENTINA; ATLANTIC FOREST; BRAZIL; PAMPAS; PANAMA [CENTRAL AMERICA];

DIDELPHIDAE; DIDELPHIMORPHIA; METATHERIA; MONODELPHIS; MONODELPHIS BREVICAUDATA; MONODELPHIS DIMIDIATA; MONODELPHIS DOMESTICA; MONODELPHIS EMILIAE; MONODELPHIS KUNSI;

EID: 79951882192     PISSN: 00222372     EISSN: 15451542     Source Type: Journal    
DOI: 10.1644/10-MAMM-A-075.1     Document Type: Article

References (89)

1. ALLEN, C. H., R. L. MARCHINTON, AND W. M. LENTZ. 1985. Movement, habitat use and denning of opossums in the Georgia Piedmont. American Midland Naturalist 113:408-412. (Pubitemid 17244715)
2. BALDWIN, R. A. 2003. An assessment of microhabitat variables and capture success of selected mammalian mesopredators. M.S. thesis, The University of Memphis, Memphis, Tennessee.
3. BENCE, J. R. 1995. Analysis of short time series: correcting for autocorrelation. Ecology 76:628-639.
4. CAROTHERS, J. H., AND F. M. JAKSIĆ . 1984. Time as a niche difference: the role of interference competition. Oikos 42:403-406.
5. CARVER, B. D. 2009. Ecological relationships of Virginia opossums (Didelphis virginiana) and raccoons (Procyon lotor). Ph.D. dissertation, The University of Memphis, Memphis, Tennessee.
6. CASE, T. J., AND M. E. GILPIN. 1974. Interference competition and niche theory. Proceedings of the National Academy of Sciences 71:3073-3077.
7. DI BITETTI, M. S., Y. E. DI BLANCO, J. A. PEREIRA, A. PAVIOLO, AND I. J. PÉ REZ. 2009. Time partitioning favors the coexistence of sympatric crab-eating foxes (Cerdocyon thous) and pampas foxes (Lycalopex gymnocercus). Journal of Mammalogy 90: 479-490.
8. DICKMAN, C. R. 1991. Mechanisms of competition among insectivorous mammals. Oecologia 85:464-471.
9. FEDRIANI, J. M., F. PALOMARES, AND M. DELIBES. 1999. Niche relations among three sympatric Mediterranean carnivores. Oecologia 121:138-148. (Pubitemid 29492369)
10. GANNON, W. L., R. S. SIKES, AND THE ANIMAL CARE AND USE COMMITTEE OF THE AMERICAN SOCIETY OF MAMMALOGISTS. 2007. Guidelines of the American Society of Mammalogists for the use of wild mammals in research. Journal of Mammalogy 88:809-823. (Pubitemid 47001236)
11. GARDNER, A. L., AND M. E. SUNQUIST. 2003. Opossum. Pp. 3-29 in Wild mammals of North America: biology, management, and conservation. 2nd ed. (G. A. Feldhamer, B. C. Thompson, and J. A. Chapman, eds.). Johns Hopkins University Press, Baltimore, Maryland.
12. GEHRT, S. D. 2003. Raccoons and allies. Pp. 611-634 in Wild mammals of North America: biology, management, and conservation. 2nd ed. (G. A. Feldhamer, B. C. Thompson, and J. A. Chapman, eds.). Johns Hopkins University Press, Baltimore, Maryland.
13. GILLETTE, L. N. 1980. Movement patterns of radio-tagged opossums in Wisconsin. American Midland Naturalist 104:1-12.
14. GRAU, G. A., G. C. SANDERSON, AND J. P. ROGERS. 1970. Age determination of raccoons. Journal of Wildlife Management 34:364-372.
15. HARRINGTON, L. A., AND D. W. MACDONALD. 2008. Spatial and temporal relationships between invasive American mink and native European polecats in the southern United Kingdom. Journal of Mammalogy 89:991-1000.
16. HELLER, K-G., AND O. vON HELVERSEN. 1989. Resource partitioning of sonar frequency bands in rhinolophoid bats. Oecologia 80:178-186.
17. HICKS, N. G., M. A. MENZEL, AND J. LAERM. 1998. Bias in the determination of temporal activity patterns of syntopic Peromyscus in the southern Appalachians. Journal of Mammalogy 79:1016-1020. (Pubitemid 128485128)
18. KAMLER, J. F., W. B. BALLARD, R. L. GILLILAND, AND K. MOTE. 2003. Spatial relationships between swift foxes and coyotes in northwestern Texas. Canadian Journal of Zoology 81:168-172. (Pubitemid 36631779)
19. KAUFMANN, J. H. 1982. Raccoon and allies. Pp. 567-585 in Wild mammals of North America: biology, management, and economics (J. A. Chapman and G. A. Feldhamer, eds.). Johns Hopkins University Press, Baltimore, Maryland.
20. KISSELL, R. E., JR., AND M. L. KENNEDY. 1992. Ecologic relationships of co-occurring populations of opossums (Didelphis virginiana) and raccoons (Procyon lotor) in Tennessee. Journal of Mammalogy 73:808-813.
21. KITCHEN, A. M., E. M. GESE, AND E. R. SCHAUSTER. 1999. Resource partitioning between coyotes and swift foxes: space, time, and diet. Canadian Journal of Zoology 77:1645-1656.
22. KOVACH, W. L. 2003. ORIANA for Windows. Version 2.0. Kovach Computing Services, Pentraeth, Wales, United Kingdom.
23. LADINE, T. A. 1997. Activity patterns of co-occurring populations of Virginia opossums (Didelphis virginiana) and raccoons (Procyon lotor). Mammalia 61:345-354. (Pubitemid 28034777)
24. LITVAITIS, J. A., AND D. J. HARRISON. 1989. Bobcat-coyote niche relationships during a period of coyote population increase. Canadian Journal of Zoology 67:1180-1188. (Pubitemid 20418846)
25. LLEWELLYN, L. M., AND F. M. UHLER. 1952. The foods of fur animals of the Patuxent Research Refuge, Maryland. American Midland Naturalist 48:193-203.
26. LOTZE, J., AND S. ANDERSON. 1979. Procyon lotor. Mammalian Species 119:1-8.
27. MCDONOUGH, C. M., AND W. J. LOUGHRY. 1997. Influences on activity patterns in a population of nine-banded armadillos. Journal of Mammalogy 78:932-941. (Pubitemid 127480917)
28. MCMANUS, J. J. 1971. Activity of captive Didelphis marsupialis. Journal of Mammalogy 52:846-848.
29. MCMANUS, J. J. 1974. Didelphis virginiana. Mammalian Species 40:1-6.
30. MORENO, R. S., R. W. KAYS, AND R. SAMUIDO, JR. 2006. Competitive release in diets of ocelot (Leopardus pardalis) and puma (Puma concolor) after jaguar (Panthera onca) decline. Journal of Mammalogy 87:808-816. (Pubitemid 44353358)
31. PRANGE, S., T. JORDAN, C. HUNTER, AND S. D. GEHRT. 2006. New radiocollars for the detection of proximity among individuals. Wildlife Society Bulletin 34:1333-1344. (Pubitemid 46213315)
32. RYSER, J. 1995. Activity, movement and home range of Virginia opossums (Didelphis virginiana) in Florida. Bulletin of the Florida Museum of Natural History, Biological Sciences 38:177-194.
33. SCHOENER, T. W. 1974. Resource partitioning in ecological communities. Science 185:27-39.
34. SEIDENSTICKER, J., M. A. O CONNELL, AND A. J. T. JOHNSINGH. 197. Virginia opossum. Pp. 246-263 in Wild furbearer management and observation in North America (M. Novak, J. A. Baker, M. E. Obbard, and B. Malloch, eds.). Ministry of Natural Resources, Ontario, Canada.
35. SPSS. 2000. SPSS v. 10.0. SPSS, Inc., Chicago, Illinois.
36. THOMPSON, D. C. 1977. Diurnal and seasonal activity of the grey squirrel. Canadian Journal of Zoology 55:1185-1189.
37. VERHOEVEN, K. J. F., K. L. SIMONSEN, AND L. M. MCINTYRE. 2005. Implementing false discovery rate control: increasing your power. Oikos 108:643-647. (Pubitemid 40336053)
38. WEIR, R. D., AND F. B. CORBOULD. 2007. Factors affecting diurnal activity of fishers in north-central British Columbia. Journal of Mammalogy 88:1508-1514.
39. ZAR, J. H. 1999. Biostatistical analysis. 4th ed. Prentice-Hall, Upper Saddle River, New Jersey.
40. ZEVELOFF, S. I. 2002. Raccoons: a natural history. Smithsonian Institution Press, Washington, D.C.
41. BAKER, R. J., AND R. D. BRADLEY. 2006. Speciation in mammals and the genetic species concept. Journal of Mammalogy 87:643-662. (Pubitemid 44353341)
42. BANDELT, H.-J., P. FORSTER, AND A. Rö HL. 1999. Median-joining networks for inferring intraspecific phylogenies. Molecular and Biological Evolution 16:37-48. (Pubitemid 29024937)
43. CARVALHO, B. DE A., L. F. B. OLIVEIRA, A. P. NUNES, AND M. S. MATTEVI. 2002. Karyotypes of nineteen marsupial species from Brazil. Journal of Mammalogy 83:58-70. (Pubitemid 34190473)
44. CREIGHTON, G. K. 1984. Systematic studies on opossums (Didelphidae) and rodents (Cricetidae). Ph.D. dissertation, University of Michigan, Ann Arbor.
45. EISENBERG, J. F., AND K. H. REDFORD. 1999. Mammals of the Neotropics. The central Neotropics: Ecuador, Peru, Bolivia, Brazil. University of Chicago Press, Chicago, Illinois 3:1-609.
46. EMMONS, L. H. 1998. Mammal fauna of Parque Noel Kempff Mercado, Bolivia. Pp. 129-143 in A biological assessment of Parque Nacional Noel Kempff Mercado (T. Killeen and T. Schulenberg, eds.). Conservation International, Washington, DC, RAP Working Paper 10.
47. EMMONS, L. H., AND F. FEER. 1997. Neotropical rainforest mammals. A field guide. 2nd ed. University of Chicago Press, Chicago, Illinois.
48. EXCOFFIER, L., P. E. SMOUSE, AND J. M. QUATTRO. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491.
49. FARRIS, J. S., M. KÄLLERSJö, A. G. KLUGE, AND C. BULT. 1995. Constructing a significance test for incongruence. Systematic Biology 44:570-572.
50. FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
51. FONSECA, G. A. B., G. HERRMANN, Y. L. R.LEITE, R. A. MITTERMEIER, A. B. RYLANDS, AND J. L. PATTON. 1996. Lista anotada dos mamíferos do Brasil. Occasional Papers in Conservation Biology 4:1-38.
52. GANNON, W. L., R. S. SIKES, AND THE ANIMAL CARE AND USE COMMITTEE OF THE AMERICAN SOCIETY OF MAMMALOGISTS. 2007. Guidelines of the American Society of Mammalogists for the use of wild mammals in research. Journal of Mammalogy 88:809-823. (Pubitemid 47001236)
53. GARDNER, A. L. 2005. Order Didelphimorphia. Pp. 3-18 in Mammal species of the world: a taxonomic and geographic reference. 3rd ed. (D. E. Wilson and D. M. Reeder, eds.). Johns Hopkins University Press, Baltimore, Maryland.
54. GUINDON, S., AND O. GASCUEL. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52:696-704. (Pubitemid 37365050)
55. HERSHKOVITZ, P. 1992. The South American gracile mouse opossums, genus Gracilinanus Gardner and Crighton, 1989 (Marmosidae, Marsupialia): a taxonomic review with notes on general morphology and relationships. Fieldiana: Zoology (New Series) 70:1-56.
56. HUELSENBECK, J. P., AND F. RONQUIST. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754-755.
57. INTERNATIONAL UNION FOR CONSERVATION OF NATURE. 2009. Red list of threatened species.http://www.iucnredlist.org. Accessed 18 January 2010.
58. JANSA, S. A., J. FORSMAN, AND R. S. VOSS. 2006. Different patterns of selection on the nuclear genes IRBP and DMP-1 affect the efficiency but not the outcome of phylogeny estimation for Didelphid marsupials. Molecular Phylogenetics and Evolution 38:363-380. (Pubitemid 43069383)
59. JANSA, S. A., AND R. S. VOSS. 2000. Phylogenetic studies on didelphid marsupials I. Introduction and preliminary results from nuclear IRBP gene sequences. Journal of Mammalian Evolution 7:43-77.
60. KIMURA, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111-120. (Pubitemid 11166431)
61. KIRSCH, J. A. W., AND R. E. PALMA. 1995. DNA/DNA hybridization studies of carnivorous marsupials. V. A further estimate of relationships among opossums (Marsupialia: Didelphidae). Mammalia 59:403-425. (Pubitemid 3018737)
62. LIM, B. K., M. D. ENGSTROM, J. C. PATTON, AND J. W. BICKHAM. 2010. Molecular phylogenetics of Reig s short-tailed opossum (Monodelphis reigi) and its distributional range extension into Guyana. Mammalian Biology 75:287-293.
63. MARES, M. A., J. K. BRAUN, AND D. GETTINGER. 1989. Observations on the distribution and ecology of the mammals of the Cerrado grasslands of Central Brazil. Annals of Carnegie Museum 58:1-60.
64. MEDRANO, J. F., E. AASEN, AND L. SHARROW. 1990. DNA extraction from nucleated red-blood cells. Biotechniques 8:43. (Pubitemid 20031637)
65. NICHOLAS, K. B., AND H. B. NICHOLAS, JR. 1997. GeneDoc: a tool for editing and annotating multiple sequence alignments. Version 2.6.002. Distributed by the authors.
66. NIXON, K. C. 2002. WinClada Version. 1.00.08. Ithaca, New York. .
67. NOWAK, R. 1999. Walker s mammals of the world. 6th ed. Johns Hopkins University Press, Baltimore, Maryland.
68. NOWAK, R. 2005. Walker s marsupials of the world. Johns Hopkins University Press, Baltimore, Maryland.
69. PATTON, J. L., AND L. P. COSTA. 2003. Molecular phylogeography and species limits in rainforest didelphid marsupials of South America. Pp. 63-81 in Predators with pouches: the biology of carnivorous marsupials (M. Jones, C. Dickman, and M. Archer, eds.). CSIRO Publishing, Collingwood, Australia.
70. PATTON, J. L., S. F. DOS REIS, AND M. N. F. DA SILVA. 1996. Relationships among didelphid marsupials based on sequence variation in the mitochondrial cytochrome b gene. Journal of Mammalian Evolution 3:3-29.
71. PINE, R. H., AND C. O. HANDLEY, JR. 2007. Genus Monodelphis. Pp. 82-107 in Mammals of South America: marsupials, xenarthrans, shrews, and bats (A. L. Gardner, ed.). University of Chicago Press, Chicago, Illinois.
72. POSADA, D., AND K. A. CRANDALL. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
73. ROGERS, A. R., AND H. C. HARPENDING. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution 9:552-569.
74. ROZAS, J., AND R. ROZAS. 1999. DNA sequence polymorphism, version 3.0. Universidad de Barcelona, Spain. dnasp/. Accessed 10 August 2002.
75. SCHNEIDER, S., D. ROESSLI, AND L. EXCOFFIER. 2000. Arlequin version 2.001: a software for population genetic data analysis. Genetics and Biometry Laboratory. Department of Anthropology, University of Geneva, Geneva, Switzerland.
76. SMITH, M. F., AND J. L. PATTON. 1993. The diversification of South American murid rodents: evidence from mitochondrial DNA sequence data for the akodontine tribe. Biological Journal of Linnean Society 50:149-177. (Pubitemid 2022629)
77. SOLARI, S. 2004. A new species of Monodelphis (Didelphimorphia: Didelphidae) from southeastern Peru. Mammalian Biology 69:145-152. (Pubitemid 39217881)
78. SOLARI, S. 2007. New species of Monodelphis (Didelphomorphia: Didelphidae) from Peru, with notes on M. adusta (Thomas, 1897). Journal of Mammalogy 88:319-329.
79. STEINER, C., AND F. M. CATZEFLIS. 2004. Genetic variation and geographical structure of five mouse opossums (Marsupialia, Didelphidae) throughout the Guiana Region. Journal of Biogeography 31:959-973. (Pubitemid 38681836)
80. STEINER, C., M. TILAK, E. J. P. DOUZERY, AND F. M. CATZEFLIS. 2005. New DNA data from a transthyretin nuclear intron suggest an Oligocene to Miocene diversification of living South America opossums (Marsupialia: Didelphidae). Molecular Phylogenetics and Evolution 35:363-379. (Pubitemid 40413404)
81. SWOFFORD, D. L. 2001. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0 b10. Sinauer Associates, Inc., Publishers, Sunderland, Massachusetts.
82. TAMURA, K., J. DUDLEY, M. NEI, AND S. KUMAR. 2007. MEGA4: molecular evolutionary genetics analysis software, version 4.0. Molecular Biology and Evolution 24:1596-1599. (Pubitemid 47236692)
83. THOMPSON, J. D., T. J. GIBSON, F. PLEWNIAK, F. JEANMOUGIN, AND D. G. HIGGINS. 1997. The Clustal X windows interface: flexible strategies for multiple alignment aided by quality analysis tools. Nucleic Acids Research 24:4876-4882. (Pubitemid 28022245)
84. TIRIRA, D. 2001. Libro Rojo de los mamíferos del Ecuador. Sociedad para la Investigación y Monitoreo de la Biodiversidad Ecuatoriana, EcoCiencia, Ministerio del Ambiente y UICN. Serie Libros Rojos del Ecuador 1. Publicación Especial 4. Quito, Ecuador.
85. VARGAS, J., T. TARIFA, AND C. CORTEZ. 2003. Nuevos registros de Monodelphis adusta y Monodelphis kunsi (Didelphimorphia: Didelphidae) para Bolivia. Mastozoologia Neotropical 10:123-131.
86. VOSS, R. S., AND S. A. JANSA. 2003. Phylogenetic studies on didelphid marsupials II. Nonmolecular data and new IRBP sequences: separate and combined analyses of didelphine relationships with denser taxon sampling. Bulletin of the American Museum of Natural History 276:1-82.
87. VOSS, R. S., D. P. LUNDE, AND N. B. SIMMONS. 2001. The mammals of Paracou, French Guiana: a neotropical rainforest fauna. Part 2: nonvolant species. Bulletin of the American Museum of Natural History 263:1-236.
88. WILSON, J. F., ET AL. 2001. Population genetic structure of variable drug response. Nature Genetics 29:265-269. (Pubitemid 33096450)
89. XIA, X., AND Z. XIE. 2001. DAMBE: data analysis in molecular biology and evolution. Journal of Heredity 92:371-373. (Pubitemid 32848767)