메뉴 건너뛰기




Volumn 7868, Issue , 2011, Pages

GPU-accelerated visualization of protein dynamics in ribbon mode

Author keywords

GPU acceleration; Molecular visualization; Protein structure; Time varying protein

Indexed keywords

COMPUTATIONAL WORK; EXPERIMENTAL TECHNIQUES; GEOMETRICAL REPRESENTATION; GPU ACCELERATION; INTERACTIVE VISUALIZATIONS; LIVING ORGANISMS; MAIN CHAINS; MOLECULAR VISUALIZATION; NOVEL ALGORITHM; POST PROCESSING; PROTEIN DATA; PROTEIN DYNAMICS; PROTEIN STRUCTURE; SECOND PHASE; SMOOTH CURVES; SPACE-FILLING MODELS; SPATIAL CONFORMATION; SPEED-UPS; STATIC AND DYNAMIC; STRUCTURAL CHANGE; STRUCTURE ELEMENTS; TIME-VARYING PROTEIN;

EID: 79951871615     PISSN: 0277786X     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.872458     Document Type: Conference Paper
Times cited : (13)

References (26)
  • 1
    • 0034406521 scopus 로고    scopus 로고
    • Macromolecular electron microscopy in the era of structural genomics
    • Baumeister, W. and Steven, A. C., "Macromolecular electron microscopy in the era of structural genomics," Trends Biochem. Sci. 25, 624-631 (2000).
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 624-631
    • Baumeister, W.1    Steven, A.C.2
  • 2
    • 48749089692 scopus 로고    scopus 로고
    • Cryo-electron tomography of cells: Connecting structure and function
    • Lučić, V., Leis, A., and Baumeister, W., "Cryo-electron tomography of cells: connecting structure and function," Histochem. and Cell Bio. 130, 185-196 (2008).
    • (2008) Histochem. and Cell Bio. , vol.130 , pp. 185-196
    • Lučić, V.1    Leis, A.2    Baumeister, W.3
  • 4
    • 0019443447 scopus 로고
    • Adv. Protein Chem., ch. The anatomy and taxonomy of protein structure, Academic Press Inc.
    • Richardson, J. S., [Adv Protein Chem.], vol. 34 of Adv. Protein Chem., ch. The anatomy and taxonomy of protein structure, 167-339, Academic Press Inc. (1981).
    • (1981) Adv Protein Chem. , vol.34 , pp. 167-339
    • Richardson, J.S.1
  • 5
    • 14844336319 scopus 로고    scopus 로고
    • Visual methods from atoms to cells
    • DOI 10.1016/j.str.2005.01.012
    • Goodsell, D. S., "Visual methods from atoms to cells," Structure 13(3), 347-354 (2005). (Pubitemid 40342873)
    • (2005) Structure , vol.13 , Issue.3 , pp. 347-354
    • Goodsell, D.S.1
  • 6
    • 33845683671 scopus 로고    scopus 로고
    • Visualization with stylized line primitives
    • IEEE
    • Stoll, C., Gumhold, S., and Seidel, H., "Visualization with stylized line primitives," in [Visualization 2005], 695-702, IEEE (2005).
    • (2005) Visualization 2005 , pp. 695-702
    • Stoll, C.1    Gumhold, S.2    Seidel, H.3
  • 8
    • 35648968070 scopus 로고    scopus 로고
    • Visualization software for molecular assemblies
    • DOI 10.1016/j.sbi.2007.06.008, PII S0959440X07000978, Carbohydrates and glycoconjugates / Biophysical methods
    • Goddard, T. D. and Ferrin, T. E., "Visualization software for molecular assemblies," Curr. Opinion Struct. Biol. 17, 587-595 (2007). (Pubitemid 350027765)
    • (2007) Current Opinion in Structural Biology , vol.17 , Issue.5 , pp. 587-595
    • Goddard, T.D.1    Ferrin, T.E.2
  • 9
    • 0029119568 scopus 로고
    • Rasmol: Biomolecular graphics for all
    • Sayle, R. A. and Milner-White, E. J., "Rasmol: biomolecular graphics for all," Trends Biochem. Sci. 20(9), 374-376 (1995).
    • (1995) Trends Biochem. Sci. , vol.20 , Issue.9 , pp. 374-376
    • Sayle, R.A.1    Milner-White, E.J.2
  • 11
  • 12
    • 35948957647 scopus 로고    scopus 로고
    • Real-time visualization of large time-varying molecules
    • Meyer, J., ed., Simulation Councils, Inc., Arlington, VA
    • Hao, X., Varshney, A., and Sukharev, S., "Real-time visualization of large time-varying molecules," in [Proc. High Performance Computing Symposium '04], Meyer, J., ed., 109-114, Simulation Councils, Inc., Arlington, VA (2004).
    • (2004) Proc. High Performance Computing Symposium '04 , pp. 109-114
    • Hao, X.1    Varshney, A.2    Sukharev, S.3
  • 14
    • 33845621535 scopus 로고    scopus 로고
    • Ambient occlusion and edge cueing to enhance real time molecular visualization
    • DOI 10.1109/TVCG.2006.115
    • Tarini, M., Cignoni, P., and Montani, C., "Ambient occlusion and edge cueing for enhancing real time molecular visualization," IEEE Trans. Vis. Comput. Graph. 12(5), 1237-1244 (2006). (Pubitemid 44955660)
    • (2006) IEEE Transactions on Visualization and Computer Graphics , vol.12 , Issue.5 , pp. 1237-1244
    • Tarini, M.1    Cignoni, P.2    Montani, C.3
  • 17
    • 79951941230 scopus 로고    scopus 로고
    • Gpu-based visualisation of protein secondary structure
    • Krone, M., Bidmon, K., and Ertl, T., "Gpu-based visualisation of protein secondary structure," in [Proceedings of TPCG 2008], 115-122 (2008).
    • (2008) Proceedings of TPCG 2008 , pp. 115-122
    • Krone, M.1    Bidmon, K.2    Ertl, T.3
  • 18
    • 0345305375 scopus 로고    scopus 로고
    • Interactive fitting augmented by force-feedback and virtual reality
    • DOI 10.1016/j.jsb.2003.09.018
    • Birmanns, S. and Wriggers, W., "Interactive fitting augmented by force-feedback and virtual reality," J. Struct. Biol. 144, 123-131 (2003). (Pubitemid 37474239)
    • (2003) Journal of Structural Biology , vol.144 , Issue.1-2 , pp. 123-131
    • Birmanns, S.1    Wriggers, W.2
  • 19
    • 0021459324 scopus 로고
    • Interpolating splines with local tension, continuity, and bias control
    • Kochanek, D. H. U. and Bartels, R. H., "Interpolating splines with local tension, continuity, and bias control," SIGGRAPH Computer Graphics 18(3), 33-41 (1984).
    • (1984) SIGGRAPH Computer Graphics , vol.18 , Issue.3 , pp. 33-41
    • Kochanek, D.H.U.1    Bartels, R.H.2
  • 20
    • 0028987990 scopus 로고
    • An algorithm for smoothly tessellating β-sheet structures in proteins
    • Bergman, L., Richardson, J., and Richardson, D., "An algorithm for smoothly tessellating β-sheet structures in proteins," J. Mol. Graphics 13(1), 36-45 (1995).
    • (1995) J. Mol. Graphics , vol.13 , Issue.1 , pp. 36-45
    • Bergman, L.1    Richardson, J.2    Richardson, D.3
  • 21
    • 0001037624 scopus 로고
    • Algorithm for ribbon models of proteins
    • Carson, M. and Bugg, C., "Algorithm for ribbon models of proteins," J. Mol. Graphics 4, 121-122 (1986).
    • (1986) J. Mol. Graphics , vol.4 , pp. 121-122
    • Carson, M.1    Bugg, C.2
  • 22
    • 0030239753 scopus 로고    scopus 로고
    • Algorithms for finding the axis of a helix: Fast rotational and parametric least-squares methods
    • DOI 10.1016/0097-8485(95)00075-5
    • Christopher, J., Swanson, R., and Baldwin, T., "Algorithms for finding the axis of a helix: fast rotational and parametric least-squares methods," Comput. Chem. 20(3), 339-345 (1996). (Pubitemid 126360196)
    • (1996) Computers and Chemistry , vol.20 , Issue.3 , pp. 339-345
    • Christopher, J.A.1    Swanson, R.2    Baldwin, T.O.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.