Characterization of hydrogen production by engineered Escherichia coli strains using rich defined media

Biotechnology and Bioprocess Engineering

Volumn 15, Issue 4, 2010, Pages 686-695

  Mathews, Juanita ^a   Li, Quanzi ^a   Wang, Guangyi ^a,b  

^a UNIVERSITY OF HAWAII   (United States)

^b PEKING UNIVERSITY   (China)

Author keywords

Hydrogen production; Hydrogenase; Metabolic engineering; Mixed acid fermentation; Rich defined media

Indexed keywords

ACID FERMENTATION; BATCH FERMENTATION; CONTROLLED CONDITIONS; E. COLI; FUMARATES; HYDROGEN FERMENTATION; HYDROGEN YIELDS; HYDROGENASE; HYDROGENASES; LACTATE DEHYDROGENASE; LAG-TIME; METABOLIC ENGINEERING; MICROBIAL PRODUCTS; MINIMAL MEDIAS; MIXED-ACID FERMENTATION; RAPID METHOD; RICH DEFINED MEDIA; WILD-TYPE STRAIN;

CELL CULTURE; ESCHERICHIA COLI; FERMENTATION; GLUCOSE; METABOLISM; STRAIN;

HYDROGEN PRODUCTION;

FORMATE DEHYDROGENASE; FUMARATE REDUCTASE; GLUCOSE; HYDROGEN; HYDROGENASE; LACTATE DEHYDROGENASE;

ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BATCH FERMENTATION; BIOENGINEERING; BIOMASS; BIOREACTOR; CONTROLLED STUDY; CULTURE MEDIUM; ESCHERICHIA COLI; GENE DELETION; NONHUMAN;

ESCHERICHIA COLI;

EID: 79951832833     PISSN: 12268372     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12257-009-3139-4     Document Type: Article

References (45)

1. Kessel, D. G. (2000) Global warming - facts, assessment, countermeasures. J. Pet Sci. Eng. 26:157-168.
2. Lin, C. Y. and C. H. Lay (2004) Effects of carbonate and phosphate concentrations on hydrogen production using anaerobic sewage sludge microflora. Int. J. Hyd. Energ. 29:275-281.
3. Oh, S. E., S. Van Ginkel, and B. E. Logan (2003) The relative effectiveness of pH control and heat treatment for enhancing biohydrogen gas production. Env. Sci. Tech. 37:5186-5190. (Pubitemid 37429774)
4. Hallenbeck, P. C. and J. R. Benemann (2002) Biological hydrogen production: Fundamentals and limiting processes. Int. J. Hyd. Energ. 27:1185-1193.
5. Levin, D. B., L. Pitt, and M. Love (2004) Biohydrogen production: Prospects and limitations to practical application. Int. J. Hyd. Energ. 29:173-185.
6. Das, D. and T. N. Veziroglu (2001) Hydrogen production by biological processes: A survey of literature. Int. J. Hyd. Energ. 26:13-28. (Pubitemid 32029921)
7. Mathews, J. and G. Wang (2009) Metabolic pathway engineering for enhanced biohydrogen production. Int. J. Hyd. Energ. 34:7404-7416.
8. Nath, K. and D. Das (2004) Improvement of fermentative hydrogen production: Various approaches. Appl. Microbiol. Biotechnol. 65:520-529. (Pubitemid 39410057)
9. Barkovich, R. and J. C. Liao (2001) Metabolic engineering of isoprenoids. Metab. Eng. 3:27-39. (Pubitemid 32948856)
10. Chartrain, M., P. M. Salmon, D. K. Robinson, and B. C. Buckland (2000) Metabolic engineering and directed evolution for the production of pharmaceuticals. Curr. Opin. Biotechnol. 11:209-214. (Pubitemid 30182318)
11. Wang, G. Y., R. D. Laidlaw, J. H. Marshall, and J. D. Keasling (2005) Metabolic engineering of fungal secondary metabolite pathways. pp. 635-666. In: Z. Q. An (ed.). Handbook of Industrial Mycology. Marcel Dekker, N Y, USA.
12. Vardar-Schara, G., T. Maeda, and T. K. Wood (2007) Metabolically engineered bacteria for producing hydrogen via fermentation. Microbial. Biotechnol. 1:107-125.
13. Vignais, P. M., J.-P. Magnin, and J. C. Willison (2006) Increasing biohydrogen production by metabolic engineering. Int. J. Hyd. Energ. 31:1478-1483. (Pubitemid 44190142)
14. Bisaillon, A., J. Turcot, and P. C. Hallenbeck (2006) The effect of nutrient limitation on hydrogen production by batch cultures of Escherichia coli. Int. J. Hyd. Energ. 31:1504-1508. (Pubitemid 44219041)
15. Kim, S., E. Seol, Y. K. Oh, G. Y. Wang, and S. Park (2009) Hydrogen production and metabolic flux analysis of metabolically engineered Escherichia coli strains. Int. J. Hyd. Energ. 34:7417-7427.
16. Maeda, T., V. Sanchez-Torres, and T. K. Wood (2008) Metabolic engineering to enhance bacterial hydrogen production. Microbial. Biotechnol. 1:30-39.
17. Maeda, T., V. Sanchez-Torres, and T. K. Wood (2007) Enhanced hydrogen production from glucose by metabolically engineered Escherichia coli. Appl. Microbiol. Biotechnol. 77:879-890. (Pubitemid 350159864)
18. Penfold, D. W., C. F. Forster, and L. E. Macaskie (2003) Increased hydrogen production by Escherichia coli strain HD701 in comparison with the wild-type parent strain MC4100. Enz. Microb. Tech. 33:185-189. (Pubitemid 37303997)
19. Redwood, M. D., I. P. Mikheenko, F. Sargent, and L. E. Macaskie (2007) Dissecting the roles of Escherichia coli hydrogenases in biohydrogen production. FEMS Microbiol. Lett. 278:48-55.
20. Yoshida, A., T. Nishimura, H. Kawaguachi, M. Inui, and H. Yukawa (2005) Enhanced hydrogen production from formic acid by formate hydrogen lyase-overexpressing Escherichia coli strains. Appl. Env. Microbiol. 71:6762-6768. (Pubitemid 43194162)
21. Yoshida, A., T. Nishimura, H. Kawaguchi, M. Inui, and H. Yukawa (2006) Enhanced hydrogen production from glucose using ldhand frd-inactivated Escherichia coli strains. Appl. Microbiol. Biotechnol. 73:67-72. (Pubitemid 44627726)
22. Mnatsakanyan, N., A. Vassilian, L. Navasardyan, K. Bagramyan, and A. Trchounian (2002) Regulation of Escherichia coli formate hydrogenlyase activity by formate at alkaline pH. Curr. Microbiol. 45:281-286. (Pubitemid 36935597)
23. Dubini, A., R. L. Pye, R. L. Jack, T. Palmer, and F. Sargent (2002) How bacteria get energy from hydrogen: A genetic analysis of periplasmic hydrogen oxidation in Escherichia coli. Int. J. Hyd. Energ. 27:1413-1420.
24. Sawers, G. (1994) The hydrogenases and formate dehydrogenases of Escherichia coli. Antonie Van Leeuwenhoek 66:57-88.
25. Skibinski, D., P. Golby, Y. Chang, F. Sargent, R. Hoffman, and R. Harper (2002) Regulation of the hydrogenase-4 operon of Escherichia coli by the sigma (54)-dependent transcriptional activators FhlA and HyfR. J. Bacteriol. 184:6642-6653. (Pubitemid 35332569)
26. Bohm, R., M. Sauter, and A. Bock (1990) Nucleotide sequence and expression of an operon in Escherichia coli coding for formate hydrogenylase components. Mol. Microbiol. 4:231-243.
27. 2 increases biological hydrogen production. Env. Sci Tech. 39:4416-4420.
28. Billen, D. and H. C. Lichstein (1951) Nutritional requirements for the production of formic hydrogenlyase, formic dehydrogenase, and hydrogenase in Escherichia coli. J. Bacteriol. 61:515-522.
29. Mandal, B., K. Nath, and D. Das (2006) Improvement of biohydrogen production under decreased partial pressure of H2 by Enterobacter cloacae. Biotechnol. Lett. 28:831-835. (Pubitemid 43926906)
30. Turcot, J., A. Bisaillon, and P. C. Hallenbeck (2007) Hydrogen production by continuous cultures of Escherchia coli under different nutrient regimes. Int. J. Hydr. Energ. 30:1465-1470. (Pubitemid 351392052)
31. Maupin, J. A. and K. T. Shanmugam (1990) Genetic regulation of formate hydrogenlyase of Escherichia coli: Role of the fhlA gene product as a transcriptional activator for a new regulatory gene, fhlB. J. Bacteriol. 172:4798-4806. (Pubitemid 20281924)
32. Yoshida, A., T. Nishimura, H. Kawaguchi, M. Inui, and H. Yukawa (2007) Efficient induction of formate hydrogen lyase of aerobically grown Escherichia coli in a three-step biohydrogen production process. Appl. Microbiol. Biotechnol. 74:754-760.
33. Rossmann, R., G. Sawers, and A. Bock (1991) Mechanism of regulation of the formate-hydrogen lyase pathway by oxygen nitrate and pH definition of the formate regulon. Mol. Microbiol. 5:2807-2814. (Pubitemid 21896012)
34. Blattner, F. R., G. P. III, C. A. Bloch, N. T. Perna, V. Burland, M. Riley, J. Collado-Vides, J. D. Glasner, C. K. Rode, G. F. Mayhew, J. Gregor, N. W. Davis, H. A. Kirkpatrick, M. A. Goeden, D. J. Rose, B. Mau, and Y. Shao (1997) The complete genome sequence of Escherichia coli K-12. Science 277:1453-1474.
35. Neidhardt, F., P. Bloch, and D. Smith (1974) Culture medium for enterobacteria. J. Bacteriol. 119:736-747.
36. Datsenko, K. and B. Wanner (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. PNAS. 97:6640-6645. (Pubitemid 30412767)
37. Laurinabichene, T. V. and A. A. Tsygankov (2001) H2 consumption by Escherichia coli coupled via hydrogenase 1 or hydrogenase 2 to different terminal electron acceptors. FEMS Microbiol. Lett. 202:121-124. (Pubitemid 32744802)
38. Menon, N. K., C. Y. Chatelus, M. Dervartanian, J. C. Wendt, K. T. Shanmugam, H. D. Peck, and A. E. Przybyla (1994) Cloning, sequencing, and mutational analysis of the hyb operon encoding Escherichia coli hydrogenase 2. J. Bacteriol. 176:4416-4423. (Pubitemid 24226480)
39. Sode, K., M. Watanabe, H. Makimoto, and M. Tomiyama (1999) Construction and characterization of fermentative lactate dehydrogenase Escherichia coli mutant and its potential for bacterial hydrogen production. Appl. Biochem. Biotechnol. 77:317-323. (Pubitemid 29300465)
40. Gonzalez, R., A. Murarka, Y. Dharmadi, and S. S. Yazdani (2008) A new model for the anaerobic fermentation of glycerol in enteric bacteria: Trunk and auxiliary pathways in Escherichia coli. Metab. Eng. 10:234-245.
41. Murarka, A., Y. Dharmadi, S. S. Yazdani, and R. Gonzalez (2007) Fermentative utilization of glycerol in Escherichia coli and its implications for the production of fuels and reduced chemicals. Appl. Env. Microbiol. 74:1124-1135. (Pubitemid 351287084)
42. Yohannes, E., D. M. Barnhart, and J. L. Slonczewski (2004) pH-dependent catabolic protein expression during anaerobic growth of Escherichia coli K-12. J. Bacteriol. 186:192-199. (Pubitemid 38020300)
43. Birkmann, A., R. G. Sawers, and A. Bock (1987) Involvement of the ntrA gene product in the anaerobic metabolism of Escherichia coli. Mol. Gen. Genet. 210:535-542.
44. Kustu, S., E. Santero, J. Keener, D. Popham, and D. Weiss (1989) Expression of sigma 54 (ntrA)-dependent genes is probably united by a common mechanism. Microbiol. Rev. 53:367-376.
45. Kirkpatrick, C., L. M. Maurer, N. E. Oyelakin, Y. N. Yoncheva, R. Maurer, and J. L. Slonczewski (2001) Acetate and formate stress: Opposite responses in the proteome of Escherichia coli. J. Bacteriol. 183:6466-6477. (Pubitemid 34059421)