Next-generation sequencing reveals recent horizontal transfer of a DNA transposon between divergent mosquitoes

PLoS ONE

Volumn 6, Issue 2, 2011, Pages

  Diao, Yupu ^a   Qi, Yumin ^b   Ma, Yajun ^c   Xia, Ai ^b   Sharakhov, Igor ^b   Chen, Xiaoguang ^d   Biedler, Jim ^b   Ling, Erjun ^a   Tu, Zhijian Jake ^b  

^a INSTITUTE OF PLANT PHYSIOLOGY AND ECOLOGY   (China)

^b VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

^c SECOND MILITARY MEDICAL UNIVERSITY   (China)

^d SOUTHERN MEDICAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA;

AEDES AEGYPTI; ANOPHELES; ANOPHELES SINENSIS; ARTICLE; CONTROLLED STUDY; DNA HYBRIDIZATION; DNA TRANSFER; GENE AMPLIFICATION; GENE DOSAGE; INSECT GENOME; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; SEQUENCE ANALYSIS; TRANSPOSON; ANIMAL; CLASSIFICATION; COMPARATIVE STUDY; FLUORESCENCE IN SITU HYBRIDIZATION; GENETICS; HIGH THROUGHPUT SEQUENCING; HORIZONTAL GENE TRANSFER; METHODOLOGY; MOLECULAR GENETICS; MOSQUITO; PHYSIOLOGY; SPECIES DIFFERENCE; SPECIES DIFFERENTIATION; TIME;

AEDES AEGYPTI; ANIMALIA; ANOPHELES SINENSIS; EUKARYOTA; HEXAPODA; HYRCANUS GROUP;

ANIMALS; BASE SEQUENCE; CULICIDAE; DNA TRANSPOSABLE ELEMENTS; GENE TRANSFER, HORIZONTAL; GENETIC SPECIATION; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; IN SITU HYBRIDIZATION, FLUORESCENCE; MOLECULAR SEQUENCE DATA; PHYLOGENY; SPECIES SPECIFICITY; TIME FACTORS;

EID: 79951829310     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0016743     Document Type: Article

References (30)

1. Lawrence JG, (2002) Gene transfer in bacteria: speciation without species? Theor Popul Biol 61: 449-460.
2. Keeling PJ, Palmer JD, (2008) Horizontal gene transfer in eukaryotic evolution. Nat Rev Genet 9: 605-618.
3. Lisch D, (2008) A new SPIN on horizontal transfer. Proc Natl Acad Sci U S A 105: 16827-16828.
4. Jacobson JW, Medhora MM, Hartl DL, (1986) Molecular structure of a somatically unstable transposable element in Drosophila. Proc Natl Acad Sci U S A 83: 8684-8688.
5. Robertson HM, (1993) The mariner transposable element is widespread in insects. Nature 362: 241-245.
6. Robertson HM, (1997) Multiple mariner transposons in flatworms and hydras are related to those of insects. J Hered 88: 195-201.
7. Diao X, Freeling M, Lisch D, (2006) Horizontal transfer of a plant transposon. PLoS Biol 4: e5.
8. Pace JK 2nd, Gilbert C, Clark MS, Feschotte C, (2008) Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods. Proc Natl Acad Sci U S A 105: 17023-17028.
9. Henikoff S, (1992) Detection of Caenorhabditis transposon homologs in diverse organisms. New Biol 4: 382-388.
10. Shao H, Tu Z, (2001) Expanding the diversity of the IS630-Tc1-mariner superfamily: discovery of a unique DD37E transposon and reclassification of the DD37D and DD39D transposons. Genetics 159: 1103-1115.
11. Silva JC, Loreto EL, Clark JB, (2004) Factors that affect the horizontal transfer of transposable elements. Curr Issues Mol Biol 6: 57-71.
12. Biedler JK, Shao H, Tu Z, (2007) Evolution and horizontal transfer of a DD37E DNA transposon in mosquitoes. Genetics 177: 2553-2558.
13. Handler AM, Zimowska GJ, Armstrong KF, (2008) Highly similar piggyBac elements in Bactrocera that share a common lineage with elements in noctuid moths. Insect Mol Biol 17: 387-393.
14. Bartolome C, Bello X, Maside X, (2009) Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes. Genome Biol 10: R22.
15. Loreto EL, Carareto CM, Capy P, (2008) Revisiting horizontal transfer of transposable elements in Drosophila. Heredity 100: 545-554.
16. Krzywinski J, Grushko OG, Besansky NJ, (2006) Analysis of the complete mitochondrial DNA from Anopheles funestus: an improved dipteran mitochondrial genome annotation and a temporal dimension of mosquito evolution. Mol Phylogenet Evol 39: 417-423.
17. Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu Z, et al. (2007) Genome sequence of Aedes aegypti, a major arbovirus vector. Science 316: 1718-1723.
18. Coy MR, Tu Z, (2007) Genomic and evolutionary analyses of Tango transposons in Aedes aegypti, Anopheles gambiae and other mosquito species. Insect Mol Biol 16: 411-421.
19. Biedler J, Qi Y, Holligan D, della Torre A, Wessler S, et al. (2003) Transposable element (TE) display and rapid detection of TE insertion polymorphism in the Anopheles gambiae species complex. Insect Mol Biol 12: 211-216.
20. Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
21. Joshi D, Choochote W, Min GS, (2009) Short report: Natural hybrid between Anopheles kleini and Anopheles sinensis. Am J Trop Med Hyg 81: 1020-1022.
22. Hwang UW, (2007) Revisited ITS2 phylogeny of Anopheles (Anopheles) Hyrcanus group mosquitoes: reexamination of unidentified and misidentified ITS2 sequences. Parasitol Res 101: 885-894.
23. Yajun M, Xu J, (2005) The Hyrcanus group of Anopheles (Anopheles) in China (Diptera: Culicidae): species discrimination and phylogenetic relationships inferred by ribosomal DNA internal transcribed spacer 2 sequences. J Med Entomol 42: 610-619.
24. O'Brochta DA, Sethuraman N, Wilson R, Hice RH, Pinkerton AC, et al. (2003) Gene vector and transposable element behavior in mosquitoes. J Exp Biol 206: 3823-3834.
25. James AA, (2005) Gene drive systems in mosquitoes: rules of the road. Trends Parasitol 21: 64-67.
26. Ye BH, Li B, Xie C, (1983) Further study on saliva gland chromosome of Anopheles sinensis larva. Acta Genetica Sinica 10: 489-492.
27. Korber B, (2000) Computational analysis of HIV molecular sequences. In: Rodrigo AG, Learn GH, editors. HIV Signature and Sequence Variation Analysis Dordrecht, The Netherlands Kluwer Academic Publishers pp. 55-72.
28. Nei M, Gojobori T, (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3: 418-426.
29. Posada D, (2009) Selection of models of DNA evolution with JModeltest. Methods Mol Biol 537: 93-112.
30. Kimura M, (1981) Estimation of evolutionary distances between homologous nucleotide sequences. Proc Natl Acad Sci U S A 78: 454-458.