메뉴 건너뛰기




Volumn 134, Issue 6, 2011, Pages

Slow dynamics in protein fluctuations revealed by time-structure based independent component analysis: The case of domain motions

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEINS; DOMAIN ANALYSIS; DOMAIN MOTIONS; EXPLICIT WATER; MD SIMULATION; MOLECULAR DYNAMICS SIMULATIONS; PROTEIN DYNAMICS; PROTEIN FLUCTUATIONS; RIGID BODY; SLOW DYNAMICS; SLOW MODE; STRUCTURE-BASED; TARGET PROTEINS; TIME-SCALES;

EID: 79951794486     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3554380     Document Type: Article
Times cited : (245)

References (29)
  • 2
    • 37249032102 scopus 로고    scopus 로고
    • Dynamic personalities of proteins
    • DOI 10.1038/nature06522, PII NATURE06522
    • K. Henzler-Wildman and D. Kern, Nature (London) 450, 964 (2007). 10.1038/nature06522 (Pubitemid 350273626)
    • (2007) Nature , vol.450 , Issue.7172 , pp. 964-972
    • Henzler-Wildman, K.1    Kern, D.2
  • 3
    • 84862273727 scopus 로고    scopus 로고
    • Protein functional motions: Basic concepts and computational methodologies
    • in press
    • S. Fuchigami, H. Fujisaki, Y. Matsunaga, and A. Kidera, Protein functional motions: Basic concepts and computational methodologies., Adv. Chem. Phys. 145, in press.
    • Adv. Chem. Phys. , vol.145
    • Fuchigami, S.1    Fujisaki, H.2    Matsunaga, Y.3    Kidera, A.4
  • 4
    • 0000998079 scopus 로고
    • 10.1016/0301-0104(91)87082-7
    • A. Kitao, F. Hirata, and N. Go, Chem. Phys. 158, 447 (1991). 10.1016/0301-0104(91)87082-7
    • (1991) Chem. Phys. , vol.158 , pp. 447
    • Kitao, A.1    Hirata, F.2    Go, N.3
  • 5
    • 0026076090 scopus 로고
    • 10.1002/prot.340110305
    • T. Ichiye and M. Karplus, Proteins 11, 205 (1991). 10.1002/prot.340110305
    • (1991) Proteins , vol.11 , pp. 205
    • Ichiye, T.1    Karplus, M.2
  • 7
    • 0000081668 scopus 로고
    • 10.1146/annurev.pc.46.100195.001255
    • S. Hayward and N. Go, Annu. Rev. Phys. Chem. 46, 223 (1995). 10.1146/annurev.pc.46.100195.001255
    • (1995) Annu. Rev. Phys. Chem. , vol.46 , pp. 223
    • Hayward, S.1    Go, N.2
  • 8
    • 0033117937 scopus 로고    scopus 로고
    • Investigating protein dynamics in collective coordinate space
    • DOI 10.1016/S0959-440X(99)80023-2
    • A. Kitao and N. Go, Curr. Opin. Struct. Biol. 9, 164 (1999). 10.1016/S0959-440X(99)80023-2 (Pubitemid 29452893)
    • (1999) Current Opinion in Structural Biology , vol.9 , Issue.2 , pp. 164-169
    • Kitao, A.1    Go, N.2
  • 9
    • 0034127361 scopus 로고    scopus 로고
    • Collective protein dynamics in relation to function
    • DOI 10.1016/S0959-440X(00)00061-0
    • H. J. C. Berendsen and S. Hayward, Curr. Opin. Struct. Biol. 10, 165 (2000). 10.1016/S0959-440X(00)00061-0 (Pubitemid 30198942)
    • (2000) Current Opinion in Structural Biology , vol.10 , Issue.2 , pp. 165-169
    • Berendsen, H.J.1    Hayward, S.2
  • 12
    • 34247247125 scopus 로고    scopus 로고
    • Conformational states and folding pathways of peptides revealed by principal-independent component analyses
    • DOI 10.1002/prot.21317
    • P. H. Nguyen, Proteins 67, 579 (2007). 10.1002/prot.21317 (Pubitemid 46625575)
    • (2007) Proteins: Structure, Function and Genetics , vol.67 , Issue.3 , pp. 579-592
    • Nguyen, P.H.1
  • 15
    • 1442281404 scopus 로고    scopus 로고
    • 10.1002/jcc.10402
    • M. Ikeguchi, J. Comput. Chem. 25, 529 (2004). 10.1002/jcc.10402
    • (2004) J. Comput. Chem. , vol.25 , pp. 529
    • Ikeguchi, M.1
  • 20
    • 0030888546 scopus 로고    scopus 로고
    • 10.1002/(SICI)1097-0134(199703)27:3425::AID-PROT103.0.CO;2-N
    • S. Hayward, A. Kitao, and H. J. C. Berendsen, Proteins 27, 425 (1997). 10.1002/(SICI)1097-0134(199703)27:3425::AID-PROT103.0.CO;2-N
    • (1997) Proteins , vol.27 , pp. 425
    • Hayward, S.1    Kitao, A.2    Berendsen, H.J.C.3
  • 21
    • 0035958660 scopus 로고    scopus 로고
    • Investigation of the mechanism of domain closure in citrate synthase by molecular dynamics simulation
    • DOI 10.1006/jmbi.2001.4808
    • D. Roccatano, A. E. Mark, and S. Hayward, J. Mol. Biol. 310, 1039 (2001). 10.1006/jmbi.2001.4808 (Pubitemid 32738376)
    • (2001) Journal of Molecular Biology , vol.310 , Issue.5 , pp. 1039-1053
    • Roccatano, D.1    Mark, A.E.2    Hayward, S.3
  • 29
    • 79951799395 scopus 로고    scopus 로고
    • private communication (June 2010)
    • A. Mitsutake, private communication (June 2010).
    • Mitsutake, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.