Participatory selection assisted by DNA markers for enhanced drought resistance and productivity in rice (Oryza sativa L.)

Euphytica

Volumn 178, Issue 1, 2011, Pages 137-150

  Kanbar, A ^a   Shashidhar, H E ^b  

^a DAMASCUS UNIVERSITY   (Syrian Arab Republic)

^b UNIVERSITY OF AGRICULTURAL SCIENCES   (India)

Author keywords

Drought; MAS; Oryza sativa L; PPS

Indexed keywords

ORYZA SATIVA;

EID: 79951772001     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-010-0284-y     Document Type: Article

References (42)

1. Anonymous (2002) Annual report for 2001. IRRI, Los Banos, Philippines.
2. Anonymous (2004) Annual report for 2003. IRRI, Los Banos, Philippines.
3. Boonjung H, Fukai S (1996) Effects of soil water deficit at different growth stage on rice growth and yield under upland conditions, II. Phenology, biomass and yield. Field Crop Res 48: 47-55.
4. Brady NC (1985) The nature and properties of soils. McMillan publishing company, New York.
5. Cao D, Oard JH (1997) Pedigree and RAPD-based DNA analysis of commercial US Rice cultivars. Crop Sci 37: 1630-1635.
6. Ceccarelli S, Grando S (1999) Decentralised participatory plant breeding. ILEIA Newsl 15: 36-37.
7. Ceccarelli S, Grando S, Booth RH (1996) International breeding programmes and resource-poor farmers: crop improvement in difficult environments. In: Eyzaguirre P, Iwanaga M (eds) Participatory plant breeding. ICARDA, Syria.
8. Ceccarelli S, Bailey E, Grando S, Tutwiler R (1997) Decentralized-participatory plant breeding: a link between formal plant breeding and small farmers. In: Proceedings of an international seminar on a participatory research and gender analysis for technology development. Cali, Colombia.
9. Ceccarelli S, Grando S, Impiglia A (1998) Choice of selection strategy in breeding barley for stress environments. Euphytica 103: 307-318.
10. Champous MC, Wang G, Sarkarung S, Mackill J, O'Toole JC, Huang N, McCouch SR (1995) Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers. Theor Appl Genet 90: 969-981.
11. Courtois B, Nguyen HT (2000) Quantitative trait loci for root penetration ability and root thickness in rice: Comparison of genetic backgrounds. Genome 43: 53-61.
12. Courtois B, McLaren G, Sinha PK, Prasad K, Yadav R, Shen L (2000) Mapping QTL associated with drought avoidance in upland rice. Mol Breed 6: 55-66.
13. Fukai S (1999) Phenology in rainfed lowland rice. Field Crops Res 64: 51-60.
14. Gill JL (1993) Design analysis of experiments in the animal and medical sciences. Iowa State University Press, Ames.
15. Gosset WS (1908) The probable error of a mean. Biometrika 6: 1-25.
16. Hemamalini GS, Shashidhar HE, Hittalmani S (2000) Molecular marker assisted tagging of morphological and physiological traits under two contrasting moisture regimes at peak vegetative stage in rice (Oryza sativa L.). Euphytica 112: 69-78.
17. Hollington PA, Steele KA (2007) Participatory breeding for drought and salt tolerant crops. In: Jenks MA et al (eds) Advances in molecular breeding toward drought and salt tolerant crops. Springer, Netherlands.
18. Kamoshita A, Wade LJ, Ali ML, Pathan MS, Zhang J, Sarkarung S, Nguyen HT (2002) Mapping QTLs for root morphology of a rice population adapted to rainfed lowland conditions. Theor Appl Genet 104: 880-893.
19. Kanbar A, Shashidhar HE, Hittalmani S (2002) Mapping of QTL associated with root and related traits in DH population of rice (Oryza sativa L.). Indian J Genet 62(4): 287-290.
20. Kanbar A, Chandrashekara M, Manjunatha M, Shashidhar HE (2004) Molecular markers for root morphological traits under LMS using transgresant backcrosses of rice (Oryza sativa L.). Indian J Genet 64(3): 185-188.
21. Kanbar A, Toorchi M, Shashidhar HE (2009) Relationship between root and yield morphological characters in rainfed low land rice (Oryza sativa L.). Cereal Res Commun 37: 261-268.
22. Knapp SJ, Bridges WC, Birkes D (1990) Mapping quantitative trait loci using quantitative traits using RFLP linkage maps. Theor Appl Genet 79: 583-592.
23. Lafitte HRM, Courtois B (1999) Development of rice yield components in irrigated upland and lowland environments. In: Peng S, Hardy B (eds) Rice research for food security and poverty alleviation. IRRI, Los Banos, Philippines.
24. Lande R, Thompson R (1990) Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics 124: 743-756.
25. O'Toole JC, Soemartono N (1981) Evaluation of a simple technique for characterizing rice root systems in relation to drought resistance. Euphytica 30: 283-290.
26. Pantuwan G, Fukai S, Cooper M, Rajatasereekul S, O'Toole JC (2002) Yield response of rice (Oryza sativa L.) genotypes to different types of drought under rainfed lowlands. I. Grain yield and yield components. Field Crops Res 73: 153-168.
27. Paterson AH, Damon S, Hewitt JD et al (1991) Mendelian factors underlying traits in tomato: comparison across species, generations and environments. Genetics 127: 181-197.
28. Price A, Courtois B (1999) Mapping QTLs associated with drought resistance in rice: progress, problems and prospects. Plant Growth Regul 29: 123-133.
29. Price AH, Tomos AD (1997) Genetic dissection of root growth in rice (Oryza sativa L.). II: mapping quantitative trait loci using molecular markers. Theor Appl Genet 95: 143-152.
30. Price AH, Steele KA, Moore BJ, Barraclough PB, Clark LJ (2000) A combined RFLP and AFLP linkage map of upland rice (Oryza sativa L.) used to identify QTLs for root-penetration ability. Theor Appl Genet 100: 49-56.
31. Ribaut JM, Betran J (1999) Single large-scale marker assisted selection (SLS-MAS). Mol Breed 5: 531-541.
32. SAS institute, Inc (1996) SAS language guide for personal computers, 6. 12th edn. Cary, North Carolina.
33. Schneider KA, Brothers ME, Kelly JD (1997) Marker-assisted selection to improve drought resistance in common bean. Crop Sci 37: 51-60.
34. Shashidhar HE, Sharma N, Venuprasad R, Toorchi M, Hittalmani S (2000) Identification of traits and molecular markers associated with components of drought resistance in rainfed lowland rice (Oryza sativa L.). In: International rice genetics symposium, IRRI, Los Banos, Philippines.
35. Shashidhar HE, Sharma N, Kanbar A, Hittalmani S (2001) Two DNA markers for maximum root length in rice validated across mapping populations and wide germplasm accessions. In: 8th National rice biotechnology network meeting, 25-29 October 2001, Aurangabad, India.
36. Shen L, Courtois B, Mcnally KL, Robin S, Li Z (2001) Evaluation of near-isogenic lines of rice introgressed with QTLs for root depth through marker-aided selection. Theor Appl Genet 103: 75-83.
37. Steele KA, Price AH, Shashidhar HE, Witcombe JR (2006) Marker-assisted selection to introgress of rice QTLs controlling root traits and aroma into an Indian upland rice variety. Theor Appl Genet 112: 208-221.
38. Tanksley SD, Medina-Filho H, Rick H (1982) Use of naturally occurring enzyme variation to detect and map genes controlling quantitative traits in an interspecific backcross of tomato. Heredity 49: 11-25.
39. Temnykh S, Declerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res 11: 1441-1452.
40. Venuprasad R, Shashidhar HE, Hittalmani S, Hemamalini GS (2002) Tagging quantitative trait loci associated with grain yield and root morphological traits in rice (Oryza sativa L.) under contrasting moisture regimes. Euphytica 128: 293-300.
41. Yadav R, Courtois B, Huang N, Mclaren G (1997) Mapping genes controlling root morphology and root distribution in a doubled-haploid population of rice. Theor Appl Genet 94(5): 619-632.
42. Yoshida S, Hasegawa S (1982) The rice root system: its development and function. In: Drought resistance in cereals crops with emphasis on rice. IRRI, Los Banos, Philippines.