-
2
-
-
0030465241
-
Characterization of individual polynucleotide molecules using a membrane channel
-
DOI 10.1073/pnas.93.24.13770
-
J. J. Kasianowitch, E. Brandin, D. Branton, and D. Deamer, Proc. Natl. Acad. Sci. USA PNASA (Pubitemid 26424195)
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.24
, pp. 13770-13773
-
-
Kasianowicz, J.J.1
Brandin, E.2
Branton, D.3
Deamer, D.W.4
-
3
-
-
0033980542
-
Rapid nanopore discrimination between single polynucleotide molecules
-
DOI 10.1073/pnas.97.3.1079
-
A. Meller, L. Nivon, E. Brandin, J. Golovchenko, and D. Branton, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.97.3.1079 97, 1097 (2000). (Pubitemid 30080815)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.3
, pp. 1079-1084
-
-
Meller, A.1
Nivon, L.2
Brandin, E.3
Golovchenko, J.4
Branton, D.5
-
4
-
-
0037855911
-
-
JCOMEL 0953-8984 10.1088/0953-8984/15/17/202
-
A. Meller, J. Phys. Condens. Matter JCOMEL 0953-8984 10.1088/0953-8984/ 15/17/202 15, R581 (2003).
-
(2003)
J. Phys. Condens. Matter
, vol.15
, pp. 581
-
-
Meller, A.1
-
6
-
-
0141955818
-
-
1476-1122 10.1038/nmat965
-
J. L. Li, M. Gershow, D. Stein, E. Brandin, and J. A. Golovchenko, Nat. Mater. 1476-1122 10.1038/nmat965 2, 611 (2003);
-
(2003)
Nat. Mater.
, vol.2
, pp. 611
-
-
Li, J.L.1
Gershow, M.2
Stein, D.3
Brandin, E.4
Golovchenko, J.A.5
-
7
-
-
0042285088
-
-
1476-1122 10.1038/nmat941
-
A. J. Storm, J. H. Chen, X. S. Ling, H. W. Zandbergen, and C. Dekker, Nat. Mater. 1476-1122 10.1038/nmat941 2, 537 (2003).
-
(2003)
Nat. Mater.
, vol.2
, pp. 537
-
-
Storm, A.J.1
Chen, J.H.2
Ling, X.S.3
Zandbergen, H.W.4
Dekker, C.5
-
8
-
-
6144254211
-
-
PRLTAO 0031-9007 10.1103/PhysRevLett.77.783
-
W. Sung and P. J. Park, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.77.783 77, 783 (1996).
-
(1996)
Phys. Rev. Lett.
, vol.77
, pp. 783
-
-
Sung, W.1
Park, P.J.2
-
9
-
-
0032003172
-
-
JCPSA6 0021-9606 10.1063/1.475688
-
P. J. Park and W. Sung, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.475688 108, 3013 (1998).
-
(1998)
J. Chem. Phys.
, vol.108
, pp. 3013
-
-
Park, P.J.1
Sung, W.2
-
10
-
-
0000102029
-
-
JCPSA6 0021-9606 10.1063/1.480386
-
M. Muthukumar, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.480386 111, 10371 (1999).
-
(1999)
J. Chem. Phys.
, vol.111
, pp. 10371
-
-
Muthukumar, M.1
-
11
-
-
0035794251
-
Translocation of a confined polymer through a hole
-
DOI 10.1103/PhysRevLett.86.3188
-
M. Muthukumar, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.86. 3188 86, 3188 (2001). (Pubitemid 32325517)
-
(2001)
Physical Review Letters
, vol.86
, Issue.14
, pp. 3188-3191
-
-
Muthukumar, M.1
-
12
-
-
37649029134
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.65.011802
-
J. Chuang, Y. Kantor, and M. Kardar, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.65.011802 65, 011802 (2001).
-
(2001)
Phys. Rev. e
, vol.65
, pp. 011802
-
-
Chuang, J.1
Kantor, Y.2
Kardar, M.3
-
13
-
-
42749107580
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.69.021806
-
Y. Kantor and M. Kardar, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.69.021806 69, 021806 (2004).
-
(2004)
Phys. Rev. e
, vol.69
, pp. 021806
-
-
Kantor, Y.1
Kardar, M.2
-
14
-
-
34547198283
-
Polymer translocation through a nanopore: A showcase of anomalous diffusion
-
DOI 10.1103/PhysRevE.76.010801
-
J. L. A. Dubbeldam, A. Milchev, V. G. Rostiashvili, and T. A. Vilgis, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.76.010801 76, 010801 (R) (2007). (Pubitemid 47115679)
-
(2007)
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
, vol.76
, Issue.1
, pp. 010801
-
-
Dubbeldam, J.L.A.1
Milchev, A.2
Rostiashvili, V.G.3
Vilgis, T.A.4
-
15
-
-
79051470426
-
-
EULEEJ 0295-5075 10.1209/0295-5075/79/18002
-
J. L. A. Dubbeldam, A. Milchev, V. G. Rostiashvili, and T. A. Vilgis, Europhys. Lett. EULEEJ 0295-5075 10.1209/0295-5075/79/18002 79, 18002 (2007).
-
(2007)
Europhys. Lett.
, vol.79
, pp. 18002
-
-
Dubbeldam, J.L.A.1
Milchev, A.2
Rostiashvili, V.G.3
Vilgis, T.A.4
-
16
-
-
67649224659
-
-
JCOMEL 0953-8984 10.1088/0953-8984/21/9/098001
-
J. L. A. Dubbeldam, A. Milchev, V. G. Rostiashvili, and T. A. Vilgis, J. Phys. Condens. Matter JCOMEL 0953-8984 10.1088/0953-8984/21/9/098001 21, 098001 (2009).
-
(2009)
J. Phys. Condens. Matter
, vol.21
, pp. 098001
-
-
Dubbeldam, J.L.A.1
Milchev, A.2
Rostiashvili, V.G.3
Vilgis, T.A.4
-
17
-
-
33646942738
-
Passage times for unbiased polymer translocation through a narrow pore
-
DOI 10.1103/PhysRevLett.96.208301
-
J. K. Wolterink, G. T. Barkema, and D. Panja, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.96.208301 96, 208301 (2006). (Pubitemid 43793959)
-
(2006)
Physical Review Letters
, vol.96
, Issue.20
, pp. 208301
-
-
Wolterink, J.K.1
Barkema, G.T.2
Panja, D.3
-
18
-
-
35348815576
-
Anomalous dynamics of unbiased polymer translocation through a narrow pore
-
DOI 10.1088/0953-8984/19/43/432202, PII S0953898407570979
-
D. Panja, G. T. Barkema, and R. C. Ball, J. Phys. Condens. Matter JCOMEL 0953-8984 10.1088/0953-8984/19/43/432202 19, 432202 (2007); (Pubitemid 47574744)
-
(2007)
Journal of Physics Condensed Matter
, vol.19
, Issue.43
, pp. 432202
-
-
Panja, D.1
Barkema, G.T.2
Ball, R.C.3
-
19
-
-
38949214310
-
Polymer translocation out of planar confinements
-
DOI 10.1088/0953-8984/20/7/075101, PII S0953898408611340
-
D. Panja, G. T. Barkema, and R. C. Ball, J. Phys. Condens. Matter JCOMEL 0953-8984 10.1088/0953-8984/20/7/075101 20, 075101 (2008). (Pubitemid 351229868)
-
(2008)
Journal of Physics Condensed Matter
, vol.20
, Issue.7
, pp. 075101
-
-
Panja, D.1
Barkema, G.T.2
Ball, R.C.3
-
20
-
-
41849123106
-
Pore-blockade times for field-driven polymer translocation
-
DOI 10.1088/0953-8984/20/9/095224, PII S0953898408644744
-
H. Vocks, D. Panja, G. T. Barkema, and R. C. Ball, J. Phys. Condens. Matter JCOMEL 0953-8984 10.1088/0953-8984/20/9/095224 20, 095224 (2008). (Pubitemid 351496004)
-
(2008)
Journal of Physics Condensed Matter
, vol.20
, Issue.9
, pp. 095224
-
-
Vocks, H.1
Panja, D.2
Barkema, G.T.3
Ball, R.C.4
-
22
-
-
77951760721
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.81.041808
-
T. Sakaue, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.81.041808 81, 041808 (2010).
-
(2010)
Phys. Rev. e
, vol.81
, pp. 041808
-
-
Sakaue, T.1
-
23
-
-
39349112398
-
A Monte Carlo algorithm to study polymer translocation through nanopores. I. Theory and numerical approach
-
DOI 10.1063/1.2826339
-
M. G. Gauthier and G. W. Slater, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2826339 128, 065103 (2008); (Pubitemid 351264601)
-
(2008)
Journal of Chemical Physics
, vol.128
, Issue.6
, pp. 065103
-
-
Gauthier, M.G.1
Slater, G.W.2
-
24
-
-
44449143492
-
A Monte Carlo algorithm to study polymer translocation through nanopores. II. Scaling laws
-
DOI 10.1063/1.2927878
-
M. G. Gauthier and G. W. Slater, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2927878 128, 205103 (2008). (Pubitemid 351770649)
-
(2008)
Journal of Chemical Physics
, vol.128
, Issue.20
, pp. 205103
-
-
Gauthier, M.G.1
Slater, G.W.2
-
26
-
-
31144460850
-
Polymer translocation through a nanopore: A two-dimensional Monte Carlo study
-
DOI 10.1063/1.2161189, 034714
-
K. Luo, T. Ala-Nissila, and S.-C. Ying, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2161189 124, 034714 (2006). (Pubitemid 43133789)
-
(2006)
Journal of Chemical Physics
, vol.124
, Issue.3
, pp. 1-5
-
-
Luo, K.1
Ala-Nissila, T.2
Ying, S.-C.3
-
27
-
-
33749261765
-
Langevin dynamics simulations of polymer translocation through nanopores
-
DOI 10.1063/1.2357118
-
I. Huopaniemi, K. Luo, T. Ala-Nissila, and S.-C. Ying, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2357118 125, 124901 (2006). (Pubitemid 44484222)
-
(2006)
Journal of Chemical Physics
, vol.125
, Issue.12
, pp. 124901
-
-
Huopaniemi, I.1
Luo, K.2
Ala-Nissila, T.3
Ying, S.-C.4
-
28
-
-
34547555054
-
-
JCPSA6 0021-9606 10.1063/1.2179792
-
K. Luo, I. Huopaniemi, T. Ala-Nissila, and S.-C. Ying, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2179792 124, 114704 (2006).
-
(2006)
J. Chem. Phys.
, vol.124
, pp. 114704
-
-
Luo, K.1
Huopaniemi, I.2
Ala-Nissila, T.3
Ying, S.-C.4
-
29
-
-
34247196693
-
Heteropolymer translocation through nanopores
-
DOI 10.1063/1.2719198
-
K. Luo, T. Ala-Nissila, S.-C. Ying, and A. Bhattacharya, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2719198 126, 145101 (2007). (Pubitemid 46610032)
-
(2007)
Journal of Chemical Physics
, vol.126
, Issue.14
, pp. 145101
-
-
Luo, K.1
Ala-Nissila, T.2
Ying, S.-C.3
Bhattacharya, A.4
-
30
-
-
34948874721
-
Influence of polymer-pore interactions on translocation
-
DOI 10.1103/PhysRevLett.99.148102
-
K. F. Luo, T. Ala-Nissila, S.-C. Ying, and A. Bhattacharya, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.99.148102 99, 148102 (2007). (Pubitemid 47519539)
-
(2007)
Physical Review Letters
, vol.99
, Issue.14
, pp. 148102
-
-
Luo, K.1
Ala-Nissila, T.2
Ying, S.-C.3
Bhattacharya, A.4
-
31
-
-
34547305670
-
Polymer translocation through a nanopore under a pulling force
-
DOI 10.1103/PhysRevE.75.061912
-
I. Huopaniemi, K. F. Luo, T. Ala-Nissila, and S.-C. Ying, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.75.061912 75, 061912 (2007). (Pubitemid 47140222)
-
(2007)
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
, vol.75
, Issue.6
, pp. 061912
-
-
Huopaniemi, I.1
Luo, K.2
Ala-Nissila, T.3
Ying, S.-C.4
-
32
-
-
38949087280
-
Sequence dependence of DNA translocation through a nanopore
-
DOI 10.1103/PhysRevLett.100.058101
-
K. F. Luo, T. Ala-Nissila, S.-C. Ying, and A. Bhattacharya, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.100.058101 100, 058101 (2008). (Pubitemid 351220690)
-
(2008)
Physical Review Letters
, vol.100
, Issue.5
, pp. 058101
-
-
Luo, K.1
Ala-Nissila, T.2
Ying, S.-C.3
Bhattacharya, A.4
-
33
-
-
56149095655
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.78.050901
-
K. Luo Santtu, T. T. Ollila, I. Huopaniemi, T. Ala-Nissila, P. Pomorski, M. Karttunen, S.-C. Ying, and A. Bhattacharya, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.78.050901 78, 050901 (R) (2008).
-
(2008)
Phys. Rev. e
, vol.78
, pp. 050901
-
-
Luo Santtu, K.1
Ollila, T.T.2
Huopaniemi, I.3
Ala-Nissila, T.4
Pomorski, P.5
Karttunen, M.6
Ying, S.-C.7
Bhattacharya, A.8
-
34
-
-
79051468987
-
-
EULEEJ 0295-5075 10.1209/0295-5075/88/68006
-
K. Luo, T. Ala-Nissila, S.-C. Ying, and R. Metzler, Europhys. Lett. EULEEJ 0295-5075 10.1209/0295-5075/88/68006 88, 68006 (2009).
-
(2009)
Europhys. Lett.
, vol.88
, pp. 68006
-
-
Luo, K.1
Ala-Nissila, T.2
Ying, S.-C.3
Metzler, R.4
-
35
-
-
34249880793
-
Unforced translocation of a polymer chain through a nanopore: The solvent effect
-
DOI 10.1063/1.2735627
-
D. Wei, W. Yang, X. Jin, and Q. Liao, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2735627 126, 204901 (2007). (Pubitemid 46872205)
-
(2007)
Journal of Chemical Physics
, vol.126
, Issue.20
, pp. 204901
-
-
Wei, D.1
Yang, W.2
Jin, X.3
Liao, Q.4
-
36
-
-
33645150902
-
-
PRLTAO 0031-9007 10.1103/PhysRevLett.96.118103
-
S. Matysiak, A. Montesi, M. Pasquali, A. B. Kolomeisky, and C. Clementi, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.96.118103 96, 118103 (2006).
-
(2006)
Phys. Rev. Lett.
, vol.96
, pp. 118103
-
-
Matysiak, S.1
Montesi, A.2
Pasquali, M.3
Kolomeisky, A.B.4
Clementi, C.5
-
37
-
-
33749066309
-
Polymer translocation in the presence of excluded volume and explicit hydrodynamic interactions
-
DOI 10.1016/j.physleta.2006.06.042, PII S0375960106009546
-
S. Guillouzic and G. W. Slater, Phys. Lett. A PYLAAG 0375-9601 10.1016/j.physleta.2006.06.042 359, 261 (2006). (Pubitemid 44466286)
-
(2006)
Physics Letters, Section A: General, Atomic and Solid State Physics
, vol.359
, Issue.4
, pp. 261-264
-
-
Guillouzic, S.1
Slater, G.W.2
-
38
-
-
40549143369
-
-
EPJSFH 1292-8941 10.1140/epje/i2007-10257-5
-
M. G. Gauthier and G. W. Slater, Eur. Phys. J. E EPJSFH 1292-8941 10.1140/epje/i2007-10257-5 25, 17 (2008).
-
(2008)
Eur. Phys. J. e
, vol.25
, pp. 17
-
-
Gauthier, M.G.1
Slater, G.W.2
-
39
-
-
61949472347
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.79.021802
-
M. G. Gauthier and G. W. Slater, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.79.021802 79, 021802 (2009).
-
(2009)
Phys. Rev. e
, vol.79
, pp. 021802
-
-
Gauthier, M.G.1
Slater, G.W.2
-
40
-
-
70349307167
-
-
EULEEJ 0295-5075 10.1209/0295-5075/85/58006
-
V. V. Lehtola, R. P. Linna, and K. Kaski, Europhys. Lett. EULEEJ 0295-5075 10.1209/0295-5075/85/58006 85, 58006 (2009);
-
(2009)
Europhys. Lett.
, vol.85
, pp. 58006
-
-
Lehtola, V.V.1
Linna, R.P.2
Kaski, K.3
-
41
-
-
58249105975
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.78.061803
-
V. V. Lehtola, R. P. Linna, and K. Kaski, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.78.061803 78, 061803 (2008).
-
(2008)
Phys. Rev. e
, vol.78
, pp. 061803
-
-
Lehtola, V.V.1
Linna, R.P.2
Kaski, K.3
-
42
-
-
70349309335
-
-
EPJSFH 1292-8941 10.1140/epje/i2009-10495-5
-
A. Bhattacharya, W. Morrison, K. Luo, T. Ala-Nissila, S.-C. Ying, A. Milchev, and K. Binder, Eur. Phys. J. E EPJSFH 1292-8941 10.1140/epje/i2009- 10495-5 29, 423 (2009).
-
(2009)
Eur. Phys. J. e
, vol.29
, pp. 423
-
-
Bhattacharya, A.1
Morrison, W.2
Luo, K.3
Ala-Nissila, T.4
Ying, S.-C.5
Milchev, A.6
Binder, K.7
-
43
-
-
77951619023
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.81.041804
-
A. Bhattacharya and K. Binder, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.81.041804 81, 041804 (2010).
-
(2010)
Phys. Rev. e
, vol.81
, pp. 041804
-
-
Bhattacharya, A.1
Binder, K.2
-
47
-
-
0041305999
-
What drives the translocation of stiff chains?
-
DOI 10.1073/pnas.1533334100
-
R. Zandi, D. Reguera D, J. Rudnick, and G. M. Gelbart, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.1533334100 100, 8649 (2003). (Pubitemid 36899152)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.15
, pp. 8649-8653
-
-
Zandi, R.1
Reguera, D.2
Rudnick, J.3
Gelbart, W.M.4
-
48
-
-
5544254964
-
-
PLRAAN 1050-2947 10.1103/PhysRevA.33.3628
-
G. S. Grest and K. Kremer, Phys. Rev. A PLRAAN 1050-2947 10.1103/PhysRevA.33.3628 33, 3628 (1986).
-
(1986)
Phys. Rev. A
, vol.33
, pp. 3628
-
-
Grest, G.S.1
Kremer, K.2
-
49
-
-
0001000668
-
-
The Θ temperature for the parameters used in this work has already been determined. For example, please see, JCPSA6 0021-9606 10.1063/1.480475
-
The Θ temperature for the parameters used in this work has already been determined. For example, please see H. Liu, A. Bhattacharya, and A. Chakrabarti, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.480475 111, 11183 (1999).
-
(1999)
J. Chem. Phys.
, vol.111
, pp. 11183
-
-
Liu, H.1
Bhattacharya, A.2
Chakrabarti, A.3
-
51
-
-
70349309335
-
-
For the same model for the case of forced translocation the exponent α=1.34 [, EPJSFH 1292-8941 10.1140/epje/i2009-10495-5
-
For the same model for the case of forced translocation the exponent α = 1.34 [A. Bhattacharya, W. Morrison, K. Luo, T. Ala-Nissila, S.-C. Ying, A. Milchev, and K. Binder, Eur. Phys. J. E EPJSFH 1292-8941 10.1140/epje/i2009-10495-5 29, 423 (2009)].
-
(2009)
Eur. Phys. J. e
, vol.29
, pp. 423
-
-
Bhattacharya, A.1
Morrison, W.2
Luo, K.3
Ala-Nissila, T.4
Ying, S.-C.5
Milchev, A.6
Binder, K.7
|