Flavobacterium dongtanense sp. nov., isolated from the rhizosphere of a wetland reed

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 2, 2011, Pages 343-346

  Xiao, Yi Ping ^a   Hui, Wei ^a   Lee, Jung Sook ^b   Lee, Keun Chul ^b   Quan, Zhe Xue ^a  

^a FUDAN UNIVERSITY   (China)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; CATALASE; FATTY ACID; FLEXIRUBIN; MK 6; OXIDOREDUCTASE; PIGMENT; QUINONE DERIVATIVE; RNA 16S; SODIUM CHLORIDE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM COLONY; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CHINA; ENZYME ACTIVITY; FLAVOBACTERIUM; FLAVOBACTERIUM CHENIAE; FLAVOBACTERIUM DONGTANENSE; FLAVOBACTERIUM INDICIUM; GENE SEQUENCE; GENETIC SIMILARITY; GENUS; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; PRIORITY JOURNAL; RHIZOSPHERE; RNA GENE; RNA SEQUENCE; WETLAND;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; DNA, BACTERIAL; FATTY ACIDS; FLAVOBACTERIUM; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; PIGMENTS, BIOLOGICAL; RHIZOSPHERE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; VITAMIN K 2; WETLANDS;

FLAVOBACTERIUM;

EID: 79951586481     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.022301-0     Document Type: Article

References (23)

1. Bergey, D. H., Harrison, F. C., Breed, R. S., Hammer, B. W. & Huntoon, F. M. (editors) (1923). Bergey's Manual of Determinative Bacteriology. Baltimore: Williams & Wilkins.
2. Bernardet, J.-F. & Bowman, J. P. (2006). The genus Flavobacterium. In The Prokaryotes, 3rd edn, vol. 7, pp. 481-531. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. Berlin: Springer.
3. Bernardet, J.-F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128-148.
4. Bernardet, J.-F., Nakagawa, Y. & Holmes, B. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070. (Pubitemid 34591240)
5. Chun, J., Lee, J. H., Jung, Y. Y., Kim, M. J., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261. (Pubitemid 350031697)
6. Dong, X.-Z. & Cai, M.-Y. (2001). Determinative Manual for Routine Bacteriology. Beijing: Scientific Press.
7. Fautz, E. & Reichenbach, H. (1980). A simple test for flexirubin-type pigments. FEMS Microbiol Lett 8, 87-91. (Pubitemid 10062201)
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
9. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
10. Gonzalez, J. M. & Saiz-Jimenez, C. (2002). A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ Microbiol 4, 770-773. (Pubitemid 35442266)
11. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
12. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
13. Qu, J.-H., Li, H.-F., Yang, J.-S. & Yuan, H.-L. (2008). Flavobacterium cheniae sp. nov., isolated from sediment of a eutrophic reservoir. Int J Syst Evol Microbiol 58, 2186-2190.
14. Quan, Z. X., Bae, H. S., Baek, J. H., Chen, W. F., Im, W. T. & Lee, S. T. (2005). Rhizobium daejeonense sp. nov. isolated from a cyanide treatment bioreactor. Int J Syst Evol Microbiol 55, 2543-2549.
15. Saha, P. & Chakrabarti, T. (2006). Flavobacterium indicum sp. nov., isolated from warm spring water in Assam, India. Int J Syst Evol Microbiol 56, 2617-2621. (Pubitemid 44782463)
16. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
17. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
18. Swofford, D. L. (1993). PAUP: phylogenetic analysis using parsimony, version 3.1.1. Champaign, IL: Illinois Natural History Survey.
19. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599. (Pubitemid 47236692)
20. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882. (Pubitemid 28022245)
21. Weon, H.-Y., Song, M.-H., Son, J.-A., Kim, B.-Y., Kwon, S. W., Go, S.-J. & Stackebrandt, E. (2007). Flavobacterium terrae sp. nov. and Flavobacterium cucumis sp. nov., isolated from greenhouse soil. Int J Syst Evol Microbiol 57, 1594-1598. (Pubitemid 47163013)
22. Xu, H.-X., Kawamura, Y., Li, N., Zhao, L., Li, T.-M., Li, Z.-Y., Shu, S. & Ezaki, T. (2000). A rapid method for determining the G+C content of bacterial chromosomes by monitoring fluorescence intensity during DNA denaturation in a capillary tube. Int J Syst Evol Microbiol 50, 1463-1469. (Pubitemid 30601956)
23. Yoon, H. S., Aslam, Z., Song, G. C., Kim, S.W., Jeon, C. O., Chon, T. S. & Chung, Y. R. (2009). Flavobacterium sasangense sp. nov., isolated from a wastewater stream polluted with heavy metals. Int J Syst Evol Microbiol 59, 1162-1166 [Retraction: Int J Syst Evol Microbiol (2010), 60, 267-268].