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Volumn 12, Issue SUPPL. 1, 2011, Pages

Ontology-based instance data validation for high-quality curated biological pathways

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL PATHWAYS; MODEL INTEGRATION; MODEL VALIDATION; ONTOLOGY CONCEPTS; PATHWAY DATABASE; PRE-PROCESSING STEP; RULE-BASED APPROACH; SYSTEMS BIOLOGY; DATA VALIDATION; HIGH QUALITY; ONTOLOGY-BASED;

EID: 79951536722     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-S1-S8     Document Type: Article
Times cited : (5)

References (31)
  • 1
    • 44449113812 scopus 로고    scopus 로고
    • Getting Started in Biological Pathway Construction and Analysis
    • 10.1371/journal.pcbi.0040016, 2323403, 18463709
    • Viswanathan GA, Seto J, Patil S, Nudelman G, Sealfon SC. Getting Started in Biological Pathway Construction and Analysis. Plos Computational Biology 2008, 4(2). 10.1371/journal.pcbi.0040016, 2323403, 18463709.
    • (2008) Plos Computational Biology , vol.4 , Issue.2
    • Viswanathan, G.A.1    Seto, J.2    Patil, S.3    Nudelman, G.4    Sealfon, S.C.5
  • 2
    • 77956507353 scopus 로고    scopus 로고
    • BioPAX - biological pathways exchange language level 2, version 1.0 documentation
    • Bader G, Cary M. BioPAX - biological pathways exchange language level 2, version 1.0 documentation. 2005,
    • (2005)
    • Bader, G.1    Cary, M.2
  • 3
    • 0034040680 scopus 로고    scopus 로고
    • An ontology for biological function based on molecular interactions
    • 10.1093/bioinformatics/16.3.269, 10869020
    • Karp P. An ontology for biological function based on molecular interactions. Bioinformatics 2000, 16(3):269-285. 10.1093/bioinformatics/16.3.269, 10869020.
    • (2000) Bioinformatics , vol.16 , Issue.3 , pp. 269-285
    • Karp, P.1
  • 4
    • 33244454674 scopus 로고    scopus 로고
    • The Protégé ontology editor and knowledge acquisition system
    • The Protégé ontology editor and knowledge acquisition system. , http://protege.stanford.edu/
  • 5
    • 84888280761 scopus 로고    scopus 로고
    • W3C RDF Validation Service
    • W3C RDF Validation Service. , http://www.w3.org/RDF/Validator/
  • 7
    • 84888281616 scopus 로고    scopus 로고
    • RacerPro
    • RacerPro. , http://www.racer-systems.com/
  • 12
    • 0036300225 scopus 로고    scopus 로고
    • Modelling biological processes using workflow and Petri Net models
    • 10.1093/bioinformatics/18.6.825, 12075018
    • Peleg M, Yeh I, Altman R. Modelling biological processes using workflow and Petri Net models. Bioinformatics 2002, 18(6):825-837. 10.1093/bioinformatics/18.6.825, 12075018.
    • (2002) Bioinformatics , vol.18 , Issue.6 , pp. 825-837
    • Peleg, M.1    Yeh, I.2    Altman, R.3
  • 14
    • 33746420065 scopus 로고    scopus 로고
    • A case study in pathway knowledgebase verification
    • 1522024, 16603083
    • Racunas SA, Shah NH, Fedoroff NV. A case study in pathway knowledgebase verification. BMC Bioinformatics 2006, 7(196). 1522024, 16603083.
    • (2006) BMC Bioinformatics , vol.7 , Issue.196
    • Racunas, S.A.1    Shah, N.H.2    Fedoroff, N.V.3
  • 15
    • 67649960092 scopus 로고    scopus 로고
    • Rule-based reasoning for systems dynamics in cell systems
    • full_text, 19425120
    • Jeong E, Nagasaki M, Miyano S. Rule-based reasoning for systems dynamics in cell systems. Genome Informatics 2008, 20:25-36. full_text, 19425120.
    • (2008) Genome Informatics , vol.20 , pp. 25-36
    • Jeong, E.1    Nagasaki, M.2    Miyano, S.3
  • 16
    • 41849092276 scopus 로고    scopus 로고
    • Cell System Ontology: Representation for modeling, visualizing, and simulating biological pathways
    • Jeong E, Nagasaki M, Saito A, Miyano S. Cell System Ontology: Representation for modeling, visualizing, and simulating biological pathways. In Silico Biology 2007, 7(55).
    • (2007) In Silico Biology , vol.7 , Issue.55
    • Jeong, E.1    Nagasaki, M.2    Saito, A.3    Miyano, S.4
  • 19
    • 18244391495 scopus 로고    scopus 로고
    • A versatile Petri net based architecture for modeling and simulation of complex biological processes
    • Nagasaki M, Doi A, Matsuno H, Miyano S. A versatile Petri net based architecture for modeling and simulation of complex biological processes. Genome Informatics 2004, 15:180-197.
    • (2004) Genome Informatics , vol.15 , pp. 180-197
    • Nagasaki, M.1    Doi, A.2    Matsuno, H.3    Miyano, S.4
  • 20
    • 2642533799 scopus 로고    scopus 로고
    • Genomic Object Net: I. A platform for modelling and simulating biopathways
    • Nagasaki M, Doi A, Matsuno H, Miyano S. Genomic Object Net: I. A platform for modelling and simulating biopathways. Applied Bioinformatics 2003, 2(3):181-184.
    • (2003) Applied Bioinformatics , vol.2 , Issue.3 , pp. 181-184
    • Nagasaki, M.1    Doi, A.2    Matsuno, H.3    Miyano, S.4
  • 22
    • 84888276191 scopus 로고    scopus 로고
    • Cell Illustrator Online
    • Cell Illustrator Online. , http://cionline.hgc.jp
  • 23
    • 84874619325 scopus 로고    scopus 로고
    • AllegroGraph
    • AllegroGraph. , http://www.franz.com/
  • 24
    • 84873387744 scopus 로고    scopus 로고
    • SPARQL query language for RDF
    • SPARQL query language for RDF. , http://www.w3.org/TR/rdf-sparql-query/
  • 25
    • 84860332865 scopus 로고    scopus 로고
    • The Protégé-OWL API
    • The Protégé-OWL API. , http://protege.stanford.edu/plugins/owl/api/
  • 26
    • 84888280259 scopus 로고    scopus 로고
    • Jena
    • Jena. , http://jena.sourceforge.net/
  • 27
    • 84888284858 scopus 로고    scopus 로고
    • PubMed
    • PubMed. , http://www.pubmed.gov/
  • 28
    • 41849145763 scopus 로고    scopus 로고
    • Conversion from BioPAX to CSO for System Dynamics and Visualization of Biological Pathway
    • full_text, 18546490
    • Jeong E, Nagasaki M, Miyano S. Conversion from BioPAX to CSO for System Dynamics and Visualization of Biological Pathway. Genome Informatics 2007, 18:225-236. full_text, 18546490.
    • (2007) Genome Informatics , vol.18 , pp. 225-236
    • Jeong, E.1    Nagasaki, M.2    Miyano, S.3
  • 30
    • 38549097071 scopus 로고    scopus 로고
    • The Universal Protein Resource (UniProt)
    • 10.1093/nar/gkn141, 2238893, 18045787, The UniProt Consortium
    • The UniProt Consortium The Universal Protein Resource (UniProt). Nucleic Acids Research 2008, 36:D190-D195. 10.1093/nar/gkn141, 2238893, 18045787, The UniProt Consortium.
    • (2008) Nucleic Acids Research , vol.36


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.