Modelling biological processes using workflow and petri net models

Bioinformatics

Volumn 18, Issue 6, 2002, Pages 825-837

  Peleg, Mor ^a   Yeh, Iwei ^a   Altman, Russ B ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; CELL ADHESION; CELL DIVISION; CELL INVASION; COMMERCIAL PHENOMENA; COMPUTER GRAPHICS; COMPUTER MODEL; COMPUTER PROGRAM; COMPUTER SIMULATION; CONTROLLED STUDY; ERYTHROCYTE; GENE CONTROL; HOST PARASITE INTERACTION; INTERNET; MALARIA; PRIORITY JOURNAL; PROTEIN FUNCTION; QUALITATIVE ANALYSIS;

EID: 0036300225     PISSN: 13674803     EISSN: None     Source Type: Journal    
DOI: 10.1093/bioinformatics/18.6.825     Document Type: Article

References (32)

1. The application of Petri Nets to workflow management
2. An ontology for bioinformatics applications
3. Invasion of vertebrate cells: Erythrocytes
4. Modelling and verification of time dependent systems using time petri nets
5. Proteases involved in erythrocyte invasion by the malaria parasite: Function and potential as chemotherapeutic targets
6. Description logics in data management
7. Object-process analysis: Maintaining the balance between system structure and behavior
8. Functional and structural genomics using PEDANT
9. Toward principles for the design of ontologies used for knowledge sharing
10. Executable object modelling with statecharts
11. STATE-MATE: A working environment for the development of complex reactive systems
12. Quantitative modelling of biochemical networks
13. An ontology for biological function based on molecular interactions
14. Identification of regulatory properties of metabolic networks by graph theoretical modelling
15. Pathway analysis in metabolic databases via differential metabolic display (DMD)
16. The PIf process interchange format and framework v. 1.2
17. Hybrid petri net representation of gene regulatory network
18. Qualitative modelling of normal blood coagulation and its pathological states using stochastic activity networks
19. The knowledge model of Protege-2000: Combining interoperability and flexibility
20. The model multiplicity problem: Experimenting with real-time specification methods
21. Qualitative analysis of biochemical reaction systems
22. A knowledge model for analysis and simulation of regulatory networks
23. Ontologies for molecular biology
24. MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products
25. The Gene Ontology Consortium, Gene Ontology: Tool for the unification of biology