메뉴 건너뛰기




Volumn 6, Issue 2, 2011, Pages 121-133

Basic statistical analysis in genetic case-control studies

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; DATA ANALYSIS; DISEASE MODEL; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE REPLICATION; GENETIC ASSOCIATION; GENOTYPE; POPULATION BASED CASE CONTROL STUDY; PRIORITY JOURNAL; QUALITY CONTROL; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL ANALYSIS;

EID: 79551665927     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2010.182     Document Type: Article
Times cited : (357)

References (39)
  • 1
    • 38449117820 scopus 로고    scopus 로고
    • Designing candidate gene and genome-wide case-control association studies
    • Zondervan, K.T. & Cardon, L.R. Designing candidate gene and genome-wide case-control association studies. Nat. Protoc. 2, 2492-2501 (2007).
    • (2007) Nat. Protoc. , vol.2 , pp. 2492-2501
    • Zondervan, K.T.1    Cardon, L.R.2
  • 2
    • 67649397907 scopus 로고    scopus 로고
    • Marker selection for genetic case-control association studies
    • Pettersson, F.H. et al. Marker selection for genetic case-control association studies. Nat. Protoc. 4, 743-752 (2009).
    • (2009) Nat. Protoc. , vol.4 , pp. 743-752
    • Pettersson, F.H.1
  • 3
    • 78651100696 scopus 로고    scopus 로고
    • Data quality control in genetic-case control association studies
    • Anderson, C.A. et al. Data quality control in genetic-case control association studies. Nat. Protoc. 5, 1564-1573 (2010).
    • (2010) Nat. Protoc. , vol.5 , pp. 1564-1573
    • Anderson, C.A.1
  • 4
    • 76649136928 scopus 로고    scopus 로고
    • An evaluation of statistical approaches to rare variant analysis in genetic association studies
    • Morris, A.P. & Zeggini, E. An evaluation of statistical approaches to rare variant analysis in genetic association studies. Genet. Epidemiol. 34, 188-193 (2010).
    • (2010) Genet. Epidemiol. , vol.34 , pp. 188-193
    • Morris, A.P.1    Zeggini, E.2
  • 5
    • 79551670899 scopus 로고    scopus 로고
    • Genome-wide association analysis and replication of coronary artery disease in South Korea suggests a causal variant common to diverse populations
    • Cho, E.Y. et al. Genome-wide association analysis and replication of coronary artery disease in South Korea suggests a causal variant common to diverse populations. Heart Asia 2, 104-108 (2010).
    • (2010) Heart Asia , vol.2 , pp. 104-108
    • Cho, E.Y.1
  • 6
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14000 cases of seven common diseases and 3000 shared controls
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 447, 661-678 (2007).
    • (2007) Nature , vol.447 , pp. 661-678
  • 7
    • 79959503826 scopus 로고    scopus 로고
    • The international hapmap project
    • The International HapMap Project. Nature 426, 789-796 (2003).
    • (2003) Nature , vol.426 , pp. 789-796
  • 8
    • 46149121706 scopus 로고    scopus 로고
    • Evaluating the effects of imputation on the power coverage and cost efficiency of genome-wide SNP platforms
    • Anderson, C.A. et al. Evaluating the effects of imputation on the power, coverage, and cost efficiency of genome-wide SNP platforms. Am. J. Hum. Genet. 83, 112-119 (2008).
    • (2008) Am. J. Hum. Genet. , vol.83 , pp. 112-119
    • Anderson, C.A.1
  • 9
    • 0031459373 scopus 로고    scopus 로고
    • Genomewide transmission/disequilibrium testing-consideration of the genotypic relative risks at disease loci
    • Camp, N.J. Genomewide transmission/disequilibrium testing-consideration of the genotypic relative risks at disease loci. Am. J. Hum. Genet. 61, 1424-1430 (1997).
    • (1997) Am. J. Hum. Genet. , vol.61 , pp. 1424-1430
    • Camp, N.J.1
  • 12
    • 0000642942 scopus 로고
    • Some methods for strengthening the common chi-squared test
    • Cochran, W.G. Some methods for strengthening the common chi-squared test. Biometrics 10 (1954).
    • (1954) Biometrics , vol.10
    • Cochran, W.G.1
  • 13
    • 0000937686 scopus 로고
    • Tests for linear trends in proportions and frequencies
    • Armitage, P. Tests for linear trends in proportions and frequencies. Biometrics 11, 375-386 (1955).
    • (1955) Biometrics , vol.11 , pp. 375-386
    • Armitage, P.1
  • 15
    • 0000586493 scopus 로고
    • On multivariate normal probabilities of rectangles: Their dependence on correlations
    • Sidak, Z. On multivariate normal probabilities of rectangles: their dependence on correlations. Ann. Math. Statist. 39, 1425-1434 (1968).
    • (1968) Ann. Math. Statist. , vol.39 , pp. 1425-1434
    • Sidak, Z.1
  • 16
    • 0005944812 scopus 로고
    • On probabilities of rectangles in multivariate student distributions: Their dependence on correlations
    • Sidak, Z. On probabilities of rectangles in multivariate Student distributions: their dependence on correlations. Ann. Math. Statist. 42, 169-175 (1971).
    • (1971) Ann. Math. Statist. , vol.42 , pp. 169-175
    • Sidak, Z.1
  • 17
    • 0002294347 scopus 로고
    • A simple sequentially rejective multiple test procedure
    • Holm, S. A simple sequentially rejective multiple test procedure. Scand. J. Stat. 6, 65-70 (1979).
    • (1979) Scand. J. Stat. , vol.6 , pp. 65-70
    • Holm, S.1
  • 18
    • 0001677717 scopus 로고
    • Controlling the false discovery rate - A practical and powerful approach to multiple testing
    • Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate - a practical and powerful approach to multiple testing. J. Royal Statist. Soc. Series B-Methodological 57, 289-300 (1995).
    • (1995) J. Royal Statist. Soc. Series B-Methodological , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 19
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini, Y. & Yekutieli, D. The control of the false discovery rate in multiple testing under dependency. Ann. Stat. 29, 1165-1188 (2001).
    • (2001) Ann. Stat. , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 21
    • 42249087793 scopus 로고    scopus 로고
    • Estimation of significance thresholds for genomewide association scans
    • Dudbridge, F. & Gusnanto, A. Estimation of significance thresholds for genomewide association scans. Genet. Epidemiol. 32, 227-234 (2008).
    • (2008) Genet. Epidemiol. , vol.32 , pp. 227-234
    • Dudbridge, F.1    Gusnanto, A.2
  • 23
    • 43249125992 scopus 로고    scopus 로고
    • Estimation of the multiple testing burden for genomewide association studies of nearly all common variants
    • Peer, I., Yelensky, R., Altshuler, D. & Daly, M.J. Estimation of the multiple testing burden for genomewide association studies of nearly all common variants. Genet. Epidemiol. 32, 381-385 (2008).
    • (2008) Genet. Epidemiol. , vol.32 , pp. 381-385
    • Peer, I.1    Yelensky, R.2    Altshuler, D.3    Daly, M.J.4
  • 24
    • 10044236430 scopus 로고    scopus 로고
    • Allelic association patterns for a dense SNP map
    • Weir, B.S., Hill, W.G. & Cardon, L.R. Allelic association patterns for a dense SNP map. Genet. Epidemiol. 27, 442-450 (2004).
    • (2004) Genet. Epidemiol. , vol.27 , pp. 442-450
    • Weir, B.S.1    Hill, W.G.2    Cardon, L.R.3
  • 25
    • 0024095149 scopus 로고
    • Gm3 5 13 14 and type 2 diabetes mellitus: An association in American Indians with genetic admixture
    • Knowler, W.C., Williams, R.C., Pettitt, D.J. & Steinberg, A.G. Gm3;5,13,14 and type 2 diabetes mellitus: an association in American Indians with genetic admixture. Am. J. Hum. Genet. 43, 520-526 (1988).
    • (1988) Am. J. Hum. Genet. , vol.43 , pp. 520-526
    • Knowler, W.C.1    Williams, R.C.2    Pettitt, D.J.3    Steinberg, A.G.4
  • 26
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • Devlin, B. & Roeder, K. Genomic control for association studies. Biometrics 55, 997-1004 (1999).
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2
  • 27
    • 58149345887 scopus 로고    scopus 로고
    • Practical aspects of imputation-driven meta-analysis of genome-wide association studies
    • de Bakker, P.I. et al. Practical aspects of imputation-driven meta-analysis of genome-wide association studies. Hum. Mol. Genet. 17, R122-R128 (2008).
    • (2008) Hum. Mol. Genet. , vol.17
    • De Bakker, P.I.1
  • 29
    • 31744435871 scopus 로고    scopus 로고
    • Joint analysis is more efficient than replication-based analysis for two-stage genome-wide association studies
    • Skol, A.D., Scott, L.J., Abecasis, G.R. & Boehnke, M. Joint analysis is more efficient than replication-based analysis for two-stage genome-wide association studies. Nat. Genet. 38, 209-213 (2006).
    • (2006) Nat. Genet. , vol.38 , pp. 209-213
    • Skol, A.D.1    Scott, L.J.2    Abecasis, G.R.3    Boehnke, M.4
  • 30
    • 36248975593 scopus 로고    scopus 로고
    • Optimal designs for two-stage genome-wide association studies
    • Skol, A.D., Scott, L.J., Abecasis, G.R. & Boehnke, M. Optimal designs for two-stage genome-wide association studies. Genet. Epidemiol. 31, 776-788 (2007).
    • (2007) Genet. Epidemiol. , vol.31 , pp. 776-788
    • Skol, A.D.1    Scott, L.J.2    Abecasis, G.R.3    Boehnke, M.4
  • 31
  • 32
    • 34548292504 scopus 로고    scopus 로고
    • Plink: A tool set for whole-genome association and population-based linkage analyses
    • Purcell, S. et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81, 559-575 (2007).
    • (2007) Am. J. Hum. Genet. , vol.81 , pp. 559-575
    • Purcell, S.1
  • 33
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • Barrett, J.C., Fry, B., Maller, J. & Daly, M.J. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21, 263-265 (2005).
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 35
    • 1842539516 scopus 로고    scopus 로고
    • A simple correction for multiple testing for single-nucleotide polymorphisms in linkage disequilibrium with each other
    • Nyholt, D.R. A simple correction for multiple testing for single-nucleotide polymorphisms in linkage disequilibrium with each other. Am. J. Hum. Genet. 74, 765-769 (2004).
    • (2004) Am. J. Hum. Genet. , vol.74 , pp. 765-769
    • Nyholt, D.R.1
  • 38
    • 10244245425 scopus 로고    scopus 로고
    • Goldsurfer: Three dimensional display of linkage disequilibrium
    • Pettersson, F., Jonsson, O. & Cardon, L.R. GOLDsurfer: three dimensional display of linkage disequilibrium. Bioinformatics 20, 3241-3243 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 3241-3243
    • Pettersson, F.1    Jonsson, O.2    Cardon, L.R.3
  • 39
    • 42149190559 scopus 로고    scopus 로고
    • Goldsurfer2 Gs2: A comprehensive tool for the analysis and visualization of genome wide association studies
    • Pettersson, F., Morris, A.P., Barnes, M.R. & Cardon, L.R. Goldsurfer2 (Gs2): a comprehensive tool for the analysis and visualization of genome wide association studies. BMC Bioinformatics 9, 138 (2008).
    • (2008) BMC Bioinformatics , vol.9 , pp. 138
    • Pettersson, F.1    Morris, A.P.2    Barnes, M.R.3    Cardon, L.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.