메뉴 건너뛰기




Volumn 134, Issue 4, 2011, Pages

Proton transport in biological systems can be probed by two-dimensional infrared spectroscopy

Author keywords

[No Author keywords available]

Indexed keywords

AMIDE I; BIOCHEMICAL REACTIONS; CHANNEL PROTEINS; EXPERIMENTAL APPROACHES; GRAMICIDIN A; IN-CHANNELS; MOLECULAR DYNAMICS SIMULATIONS; MOLECULAR LEVELS; NUMERICAL SIMULATION; PROTON CHANNELS; PROTON TRANSPORT; PROTON TRANSPORT PROCESS; RATE-LIMITING STEPS; SPECTRAL FEATURE; TIME RESOLUTION; TWO-DIMENSIONAL INFRARED SPECTROSCOPY;

EID: 79551611084     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3522770     Document Type: Article
Times cited : (13)

References (59)
  • 1
    • 0002036605 scopus 로고
    • 10.1007/s11167-005-0250-y
    • C. J. T. de Grotthuss, Ann. Chim. 58, 5473 (1806). 10.1007/s11167-005- 0250-y
    • (1806) Ann. Chim. , vol.58 , pp. 5473
    • De Grotthuss, C.J.T.1
  • 2
    • 11744384413 scopus 로고
    • 10.1021/jp060149i
    • N. Agmon, Chem. Phys. Lett. 224, 456 (1995). 10.1021/jp060149i
    • (1995) Chem. Phys. Lett. , vol.224 , pp. 456
    • Agmon, N.1
  • 5
    • 0021288949 scopus 로고
    • 31 10.1146/annurev.ph.46.030184.002531
    • O. S. Andersen, Annu. Rev. Physiol. 46, 5 31 (1984) 10.1146/annurev.ph. 46.030184.002531.
    • (1984) Annu. Rev. Physiol. , vol.46 , pp. 5
    • Andersen, O.S.1
  • 6
    • 0025310051 scopus 로고
    • 27 10.1146/annurev.bb.19.060190.001015
    • B. A. Wallace, Annu. Rev. Biophys. Chem. 19, 1 27 (1990) 10.1146/annurev.bb.19.060190.001015.
    • (1990) Annu. Rev. Biophys. Chem. , vol.19 , pp. 1
    • Wallace, B.A.1
  • 8
    • 0036221414 scopus 로고    scopus 로고
    • 82 10.1016/S0006-3495(02)75385-X
    • A. Chernyshev and S. Cukierman, Biophys. J. 82, 1 82 (2002) 10.1016/S0006-3495(02)75385-X.
    • (2002) Biophys. J. , vol.82 , pp. 1
    • Chernyshev, A.1    Cukierman, S.2
  • 11
    • 0036225143 scopus 로고    scopus 로고
    • 10.1103/PhysRevB.82.205416
    • R. Pome and B. Roux, Biophys. J. 82, 2304 (2002). 10.1103/PhysRevB.82. 205416
    • (2002) Biophys. J. , vol.82 , pp. 2304
    • Pome, R.1    Roux, B.2
  • 13
    • 33744944511 scopus 로고    scopus 로고
    • Energetics of ion permeation, rejection, binding, and block in gramicidin a from free energy simulations
    • DOI 10.1529/biophysj.105.074633
    • T. Bastug, A. Gray-Weale, S. M. Patra, and S. Kuyucak, Biophys. J. 90, 2285 (2006). 10.1529/biophysj.105.074633 (Pubitemid 43846112)
    • (2006) Biophysical Journal , vol.90 , Issue.11 , pp. 3941-3950
    • Bastug, T.1    Kuyucak, S.2
  • 14
    • 0030660573 scopus 로고    scopus 로고
    • The effect of gramicidin, a topical contraceptive and antimicrobial agent with anti-HIV activity, against herpes simplex viruses type 1 and 2 in vitro
    • DOI 10.1007/s007050050237
    • A. S. Bourinbaiar and C. F. Coleman, Archives of Virology 142, 2 225 (1997) 10.1007/s007050050237. (Pubitemid 27518836)
    • (1997) Archives of Virology , vol.142 , Issue.11 , pp. 2225-2235
    • Bourinbaiar, A.S.1    Coleman, C.F.2
  • 16
    • 0041708189 scopus 로고    scopus 로고
    • 95503 10.1103/PhysRevLett.90.195503
    • D. J. Mann and M. D. Halls, Phys. Rev. Lett. 90, 1 95503 (2003) 10.1103/PhysRevLett.90.195503.
    • (2003) Phys. Rev. Lett. , vol.90 , pp. 1
    • Mann, D.J.1    Halls, M.D.2
  • 18
    • 79551594704 scopus 로고    scopus 로고
    • 714. 10.1021/ar970161g
    • N. Agmon, J. Chem. Phys. 93, 1 714 (1996). 10.1021/ar970161g
    • (1996) J. Chem. Phys. , vol.93 , pp. 1
    • Agmon, N.1
  • 19
    • 12344277810 scopus 로고    scopus 로고
    • Realistic simulations of proton transport along the gramicidin channel: Demonstrating the importance of solvation effects
    • DOI 10.1021/jp0465783
    • S. Braun-Sand, A. Burykin, Z. T. Chu, and A. Warshel, J. Phys. Chem. B 109, 5 83 (2005) 10.1021/jp0465783. (Pubitemid 40121005)
    • (2005) Journal of Physical Chemistry B , vol.109 , Issue.1 , pp. 583-592
    • Braun-Sand, S.1    Burykin, A.2    Chu, Z.T.3    Warshel, A.4
  • 23
    • 0025823857 scopus 로고
    • 01 10.1016/S0006-3495(91)82034-3
    • M. Akeson and D. W. Deamer, Biophys. J. 60, 1 01 (1991) 10.1016/S0006-3495(91)82034-3.
    • (1991) Biophys. J. , vol.60 , pp. 1
    • Akeson, M.1    Deamer, D.W.2
  • 24
    • 34250334738 scopus 로고    scopus 로고
    • Invariance of single-file water mobility in gramicidin-like peptidic pores as function of pore length
    • DOI 10.1529/biophysj.106.102921
    • G. Portella, P. Pohl, and B. L. de Groot, Biophys. J. 92, 3 930 (2007) 10.1529/biophysj.106.102921. (Pubitemid 46910579)
    • (2007) Biophysical Journal , vol.92 , Issue.11 , pp. 3930-3937
    • Portella, G.1    Pohl, P.2    De Groot, B.L.3
  • 25
    • 61549089671 scopus 로고    scopus 로고
    • 25 10.1016/j.bpj.2008.09.059
    • G. Portella and B. L. de Groot, Biophys. J. 96, 9 25 (2009) 10.1016/j.bpj.2008.09.059.
    • (2009) Biophys. J. , vol.96 , pp. 9
    • Portella, G.1    De Groot, B.L.2
  • 26
    • 33644989063 scopus 로고    scopus 로고
    • 43 10.1021/ar0402098
    • G. A. Voth, Acc. Chem. Res. 39, 1 43 (2006) 10.1021/ar0402098.
    • (2006) Acc. Chem. Res. , vol.39 , pp. 1
    • Voth, G.A.1
  • 27
    • 33749052047 scopus 로고    scopus 로고
    • 10.1103/PhysRevLett.103.238302
    • C. A. Wraight, Biochim. Biophys. Acta 1757, 886 (2006). 10.1103/PhysRevLett.103.238302
    • (2006) Biochim. Biophys. Acta , vol.1757 , pp. 886
    • Wraight, C.A.1
  • 31
    • 43449136205 scopus 로고    scopus 로고
    • Coherent two-dimensional optical spectroscopy
    • DOI 10.1021/cr078377b
    • M. Cho, Chem. Rev. 108, 1 331 (2008) 10.1021/cr078377b. (Pubitemid 351662365)
    • (2008) Chemical Reviews , vol.108 , Issue.4 , pp. 1331-1418
    • Cho, M.1
  • 35
    • 0035935379 scopus 로고    scopus 로고
    • Time-resolved two-dimensional vibrational spectroscopy of a short α-helix in water
    • DOI 10.1063/1.1407842
    • S. Woutersen and P. Hamm, J. Chem. Phys. 115, 7 737 (2001) 10.1063/1.1407842. (Pubitemid 33047866)
    • (2001) Journal of Chemical Physics , vol.115 , Issue.16 , pp. 7737-7743
    • Woutersen, S.1    Hamm, P.2
  • 41
    • 33751216142 scopus 로고    scopus 로고
    • Nonadiabatic effects in the two-dimensional infrared spectra of peptides: Application to alanine dipeptide
    • DOI 10.1021/jp064795t
    • T. L. C. Jansen and J. Knoester, J. Phys. Chem. B 110, 2 2910 (2006) 10.1021/jp064795t. (Pubitemid 44787620)
    • (2006) Journal of Physical Chemistry B , vol.110 , Issue.45 , pp. 22910-22916
    • Jansen, T.L.C.1    Knoester, J.2
  • 44
    • 33745630723 scopus 로고    scopus 로고
    • Membrane protein simulations with a united-atom lipid and all-atom protein model: Lipid-protein interactions, side chain transfer free energies and model proteins
    • DOI 10.1088/0953-8984/18/28/S07, PII S0953898406150286, S07
    • D. P. Tieleman, J. L. MacCallum, W. L. Ash, C. Kandt, Z. Xu, and L. Monticelli, J. Phys. Cond. Matt. 18, S1221 (2006) 10.1088/0953-8984/18/28/S07. (Pubitemid 43982969)
    • (2006) Journal of Physics Condensed Matter , vol.18 , Issue.28
    • Tieleman, D.P.1    MacCallum, J.L.2    Ash, W.L.3    Kandt, C.4    Xu, Z.5    Monticelli, L.6
  • 46
    • 0035797933 scopus 로고    scopus 로고
    • Structures of gramicidins A, B, and C incorporated into sodium dodecyl sulfate micelles
    • DOI 10.1021/bi010942w
    • L. E. Townsley, W. A. Tucker, S. Sham, and J. F. Hinton, Biochemistry 40, 1 1676 (2001) 10.1021/bi010942w. (Pubitemid 32906030)
    • (2001) Biochemistry , vol.40 , Issue.39 , pp. 11676-11686
    • Townsley, L.E.1    Tucker, W.A.2    Sham, S.3    Hinton, J.F.4
  • 47
    • 33947139278 scopus 로고    scopus 로고
    • Setting up and running molecular dynamics simulations of membrane proteins
    • DOI 10.1016/j.ymeth.2006.08.006, PII S1046202306001873
    • C. Kandt, W. L. Ash, and D. P. Tieleman, Methods 41, 4 75 (2007) 10.1016/j.ymeth.2006.08.006. (Pubitemid 46400527)
    • (2007) Methods , vol.41 , Issue.4 , pp. 475-488
    • Kandt, C.1    Ash, W.L.2    Peter Tieleman, D.3
  • 48
    • 79551593629 scopus 로고    scopus 로고
    • See supplementary material at E-JCPSA6-134-006046 for details on the all-atom simulations and the parameterization of the kinetic model
    • See supplementary material at http://dx.doi.org/10.1063/1.3522770 E-JCPSA6-134-006046 for details on the all-atom simulations and the parameterization of the kinetic model.
  • 51
    • 0035873645 scopus 로고    scopus 로고
    • Peak shapes in femtosecond 2D correlation spectroscopy
    • DOI 10.1016/S0301-0104(01)00233-6, PII S0301010401002336
    • J. D. Hybl, Y. Christophe, and D. M. Jonas, Chem. Phys. 266, 2 95 (2001) 10.1016/S0301-0104(01)00233-6. (Pubitemid 32421586)
    • (2001) Chemical Physics , vol.266 , Issue.2-3 , pp. 295-309
    • Hybl, J.D.1    Christophe, Y.2    Jonas, D.M.3
  • 52
    • 33748257791 scopus 로고    scopus 로고
    • Characterization of spectral diffusion from two-dimensional line shapes
    • DOI 10.1063/1.2232271
    • S. T. Roberts, J. J. Loparo, and A. Tokmakoff, J. Chem. Phys. 125, 0 84502 (2006) 10.1063/1.2232271. (Pubitemid 44320062)
    • (2006) Journal of Chemical Physics , vol.125 , Issue.8 , pp. 084502
    • Roberts, S.T.1    Loparo, J.J.2    Tokmakoff, A.3
  • 53
    • 44449086941 scopus 로고    scopus 로고
    • Taking apart the two-dimensional infrared vibrational echo spectra: More information and elimination of distortions
    • DOI 10.1063/1.2927906
    • K. Kwak, D. E. Rosenfeld, and M. D. Fayer, J. Chem. Phys. 128, 2 04505 (2008). 10.1063/1.2927906 (Pubitemid 351770634)
    • (2008) Journal of Chemical Physics , vol.128 , Issue.20 , pp. 204505
    • Kwak, K.1    Rosenfeld, D.E.2    Fayer, M.D.3
  • 54
  • 57
    • 79551608803 scopus 로고    scopus 로고
    • 9. 10.1529/biophysj.108.133777
    • R. Pomés and B. Roux, Biophys. J. 71, 1 9 (1996). 10.1529/biophysj.108.133777
    • (1996) Biophys. J. , vol.71 , pp. 1
    • Pomés, R.1    Roux, B.2
  • 59
    • 0002339456 scopus 로고    scopus 로고
    • 6 10.1016/S0009-2614(00)00995-7
    • U. W. Schmitt and G. A. Voth, Chem. Phys. Lett. 329, 3 6 (2000) 10.1016/S0009-2614(00)00995-7.
    • (2000) Chem. Phys. Lett. , vol.329 , pp. 3
    • Schmitt, U.W.1    Voth, G.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.