-
1
-
-
0035846967
-
Structure of cytochrome c oxidase: A comparison of the bacterial and mitochondrial enzymes
-
DOI 10.1016/S0167-4838(00)00241-7, PII S0167483800002417
-
Abramson, J., Svensson-Ek, M., Byrne, B. & Iwata, S. (2001). Structure of cytochrome c oxidase: a comparison of the bacterial and mitochondrial enzymes. Biochim Biophys Acta 1544, 1-9. (Pubitemid 32121840)
-
(2001)
Biochimica et Biophysica Acta - Protein Structure and Molecular Enzymology
, vol.1544
, Issue.1-2
, pp. 1-9
-
-
Abramson, J.1
Svensson-Ek, M.2
Byrne, B.3
Iwata, S.4
-
2
-
-
0842264185
-
The strict anaerobe Bacteroides fragilis grows in and benefits from nanomolar concentrations of oxygen
-
DOI 10.1038/nature02285
-
Baughn, A. D. & Malamy, M. H. (2004). The strict anaerobe Bacteroides fragilis grows in and benefits from nanomolar concentrations of oxygen. Nature 427, 441-444. (Pubitemid 38168496)
-
(2004)
Nature
, vol.427
, Issue.6973
, pp. 441-444
-
-
Baughn, A.D.1
Malamy, M.H.2
-
3
-
-
0027143557
-
Partial purification of the cyanide-resistant alternative oxidase of skunk cabbage (Symplocarpus foetidus) mitochondria
-
Berthold, D. A. & Siedow, J. N. (1993). Partial purification of the cyanide-resistant alternative oxidase of skunk cabbage (Symplocarpus foetidus) mitochondria. Plant Physiol 101, 113-119.
-
(1993)
Plant Physiol
, vol.101
, pp. 113-119
-
-
Berthold, D.A.1
Siedow, J.N.2
-
4
-
-
0141661868
-
Membrane-Bound Diiron Carboxylate Proteins
-
DOI 10.1146/annurev.arplant.54.031902.134915
-
Berthold, D. A. & Stenmark, P. (2003). Membrane-bound diiron carboxylate proteins. Annu Rev Plant Biol 54, 497-517. (Pubitemid 37417753)
-
(2003)
Annual Review of Plant Biology
, vol.54
, pp. 497-517
-
-
Berthold, D.A.1
Stenmark, P.2
-
5
-
-
0037113986
-
EPR studies of the mitochondrial alternative oxidase
-
Berthold, D. A., Voevodskaya, N., Stenmark, P., Graslund, A. & Nordlund, P. (2002). EPR studies of the mitochondrial alternative oxidase. J Biol Chem 277, 43608-43614.
-
(2002)
J Biol Chem
, vol.277
, pp. 43608-43614
-
-
Berthold, D.A.1
Voevodskaya, N.2
Stenmark, P.3
Graslund, A.4
Nordlund, P.5
-
6
-
-
0017184389
-
Rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford, M. M. (1976). Rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72, 248-254.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
7
-
-
14644397208
-
Cytochrome bd oxidase, oxidative stress, and dioxygen tolerance of the strictly anaerobic bacterium Moorella thermoacetica
-
DOI 10.1128/JB.187.6.2020-2029.2005
-
Das, A., Silaghi-Dumitrescu, R., Ljungdahl, L. G. & Kurtz, D. M. (2005). Cytochrome bd oxidase, oxidative stress, and dioxygen tolerance of the strictly anaerobic bacterium Moorella thermoacetica. J Bacteriol 187, 2020-2029. (Pubitemid 40316232)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.6
, pp. 2020-2029
-
-
Das, A.1
Silaghi-Dumitrescu, R.2
Ljungdahl, L.G.3
Kurtz Jr., D.M.4
-
8
-
-
52949103274
-
Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea
-
Ettwig, K. F., Shima, S., van de Pas-Schoonen, K. T., Kahnt, J., Medema, M. H., op den Camp, H. J. M., Jetten, M. S. M. & Strous, M. (2008). Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea. Environ Microbiol 10, 3164-3173.
-
(2008)
Environ Microbiol
, vol.10
, pp. 3164-3173
-
-
Ettwig, K.F.1
Shima, S.2
Van De Pas-Schoonen, K.T.3
Kahnt, J.4
Medema, M.H.5
Op Den Camp, H.J.M.6
Jetten, M.S.M.7
Strous, M.8
-
9
-
-
77950258771
-
Nitrite-driven anaerobic methane oxidation by oxygenic bacteria
-
Ettwig, K. F., Butler, M. K., Le Paslier, D., Pelletier, E., Mangenot, S., Kuypers, M. M. M., Schreiber, F., Dutilh, B. E., Zedelius, J. & other authors (2010). Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Nature 464, 543-548.
-
(2010)
Nature
, vol.464
, pp. 543-548
-
-
Ettwig, K.F.1
Butler, M.K.2
Le Paslier, D.3
Pelletier, E.4
Mangenot, S.5
Kuypers, M.M.M.6
Schreiber, F.7
Dutilh, B.E.8
Zedelius, J.9
Authors, O.10
-
10
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
11
-
-
0033767236
-
Structure of a dioxygen reduction enzyme from Desulfovibrio gigas
-
Frazão, C., Silva, G., Gomes, C. M., Matias, P., Coelho, R., Sieker, L., Macedo, S., Liu, M. Y., Oliveira, S. & other authors (2000). Structure of a dioxygen reduction enzyme from Desulfovibrio gigas. Nat Struct Biol 7, 1041-1045.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 1041-1045
-
-
Frazão, C.1
Silva, G.2
Gomes, C.M.3
Matias, P.4
Coelho, R.5
Sieker, L.6
Macedo, S.7
Liu, M.Y.8
Oliveira, S.9
-
12
-
-
0028061194
-
The superfamily of heme-copper respiratory oxidases
-
García-Horsman, J. A., Barquera, B., Rumbley, J., Ma, J. X. & Gennis, R. B. (1994). The superfamily of heme-copper respiratory oxidases. J Bacteriol 176, 5587-5600. (Pubitemid 24280490)
-
(1994)
Journal of Bacteriology
, vol.176
, Issue.18
, pp. 5587-5600
-
-
Garcia-Horsman, J.A.1
Barquera, B.2
Rumbley, J.3
Ma, J.4
Gennis, R.B.5
-
13
-
-
34548628155
-
The biochemistry of methane oxidation
-
Hakemian, A. S. & Rosenzweig, A. C. (2007). The biochemistry of methane oxidation. Annu Rev Biochem 76, 223-241.
-
(2007)
Annu Rev Biochem
, vol.76
, pp. 223-241
-
-
Hakemian, A.S.1
Rosenzweig, A.C.2
-
14
-
-
0021280149
-
562-o complex from cells in the early exponential phase of aerobic growth
-
562-o complex from cells in the early exponential phase of aerobic growth. J Biol Chem 259, 3368-3374.
-
(1984)
J Biol Chem
, vol.259
, pp. 3368-3374
-
-
Kita, K.1
Konishi, K.2
Anraku, Y.3
-
15
-
-
0021230199
-
Purification and characterization of the cytochrome oxidase from alkalophilic Bacillus firmus RAB
-
Kitada, M. & Krulwich, T. A. (1984). Purification and characterization of the cytochrome oxidase from alkalophilic Bacillus firmus RAB. J Bacteriol 158, 963-966. (Pubitemid 14088615)
-
(1984)
Journal of Bacteriology
, vol.158
, Issue.3
, pp. 963-966
-
-
Kitada, M.1
Krulwich, T.A.2
-
16
-
-
14344254418
-
-
2nd edn, London: Kluwer Academic Publishing
-
Kowalchuk, G. A., de Bruijn, F. J., Head, I. M., Akkermans, A. D. & van Elsas, J. D. (2004). Molecular Microbial Ecology Manual (MMEM), 2nd edn, vol. 1. London: Kluwer Academic Publishing.
-
(2004)
Molecular Microbial Ecology Manual (MMEM)
, vol.1
-
-
Kowalchuk, G.A.1
De Bruijn, F.J.2
Head, I.M.3
Akkermans, A.D.4
Van Elsas, J.D.5
-
17
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
DOI 10.1006/jmbi.2000.4315
-
Krogh, A., Larsson, B., von Heijne, G. & Sonnhammer, E. L. L. (2001). Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305, 567-580. (Pubitemid 33032862)
-
(2001)
Journal of Molecular Biology
, vol.305
, Issue.3
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Von Heijne, G.3
Sonnhammer, E.L.L.4
-
18
-
-
0025828687
-
Bacillus subtilis expresses two kinds of haem-A-containing terminal oxidases
-
Lauraeus, M., Haltia, T., Saraste, M. & Wikstrom, M. (1991). Bacillus subtilis expresses two kinds of haem-A-containing terminal oxidases. Eur J Biochem 197, 699-705.
-
(1991)
Eur J Biochem
, vol.197
, pp. 699-705
-
-
Lauraeus, M.1
Haltia, T.2
Saraste, M.3
Wikstrom, M.4
-
20
-
-
40949110571
-
Compelling EPR evidence that the alternative oxidase is a diiron carboxylate protein
-
Moore, A. L., Carré, J. E., Affourtit, C., Albury, M. S., Crichton, P. G., Kita, K. & Heathcote, P. (2008). Compelling EPR evidence that the alternative oxidase is a diiron carboxylate protein. Biochim Biophys Acta 1777, 327-330.
-
(2008)
Biochim Biophys Acta
, vol.1777
, pp. 327-330
-
-
Moore, A.L.1
Carré, J.E.2
Affourtit, C.3
Albury, M.S.4
Crichton, P.G.5
Kita, K.6
Heathcote, P.7
-
21
-
-
0027172336
-
Comparison of ubiquinol and cytochrome c terminal oxidases. An alternative view
-
DOI 10.1016/0014-5793(93)80156-O
-
Musser, S. M., Stowell, M. H. B. & Chan, S. I. (1993). Comparison of ubiquinol and cytochrome-c terminal oxidases - an alternative view. FEBS Lett 327, 131-136. (Pubitemid 23211175)
-
(1993)
FEBS Letters
, vol.327
, Issue.2
, pp. 131-136
-
-
Musser, S.M.1
Stowell, M.H.B.2
Chan, S.I.3
-
24
-
-
33645876469
-
A microbial consortium couples anaerobic methane oxidation to denitrification
-
Raghoebarsing, A. A., Pol, A., van de Pas-Schoonen, K. T., Smolders, A. J. P., Ettwig, K. F., Rijpstra, W. I. C., Schouten, S., Damste, J. S. S., Op den Camp, H. J. M. & other authors (2006). A microbial consortium couples anaerobic methane oxidation to denitrification. Nature 440, 918-921.
-
(2006)
Nature
, vol.440
, pp. 918-921
-
-
Raghoebarsing, A.A.1
Pol, A.2
Van De Pas-Schoonen, K.T.3
Smolders, A.J.P.4
Ettwig, K.F.5
Rijpstra, W.I.C.6
Schouten, S.7
Damste, J.S.S.8
Op Den Camp, H.J.M.9
-
25
-
-
0018077242
-
Quinol oxidation in Arum maculatum mitochondria and its application to the assay, solubilisation and partial purification of the alternative oxidase
-
Rich, P. R. (1978). Quinol oxidation in Arum maculatum mitochondria and its application to the assay, solubilisation and partial purification of the alternative oxidase. FEBS Lett 96, 252-256.
-
(1978)
FEBS Lett
, vol.96
, pp. 252-256
-
-
Rich, P.R.1
-
26
-
-
0027442655
-
In vitro heme O synthesis by the cyoE gene product from Escherichia coli
-
Saiki, K., Mogi, T., Ogura, K. & Anraku, Y. (1993). In vitro heme O synthesis by the cyoE gene product from Escherichia coli. J Biol Chem 268, 26041-26044.
-
(1993)
J Biol Chem
, vol.268
, pp. 26041-26044
-
-
Saiki, K.1
Mogi, T.2
Ogura, K.3
Anraku, Y.4
-
27
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
28
-
-
0014984252
-
Specific inhibition of the cyanide-insensitive respiratory pathway in plant mitochondria by hydroxamic acids
-
Schonbaum, G. R., Bonner, W. D., Jr, Storey, B. T. & Bahr, J. T. (1971). Specific inhibition of the cyanide-insensitive respiratory pathway in plant mitochondria by hydroxamic acids. Plant Physiol 47, 124-128.
-
(1971)
Plant Physiol
, vol.47
, pp. 124-128
-
-
Schonbaum, G.R.1
Bonner Jr., W.D.2
Storey, B.T.3
Bahr, J.T.4
-
29
-
-
0031614678
-
A hidden Markov model for predicting transmembrane helices in protein sequences
-
Sonnhammer, E. L., von Heijne, G. & Krogh, A. (1998). A hidden Markov model for predicting transmembrane helices in protein sequences. Proc Int Conf Intell Syst Mol Biol 6, 175-182.
-
(1998)
Proc Int Conf Intell Syst Mol Biol
, vol.6
, pp. 175-182
-
-
Sonnhammer, E.L.1
Von Heijne, G.2
Krogh, A.3
-
30
-
-
0028972450
-
Identification of essential amino acids within the proposed CuA binding site in subunit II of cytochrome c oxidase
-
Speno, H., Taheri, M. R., Sieburth, D. & Martin, C. T. (1995). Identification of essential amino acids within the proposed CuA binding site in subunit II of cytochrome c oxidase. J Biol Chem 270, 25363-25369.
-
(1995)
J Biol Chem
, vol.270
, pp. 25363-25369
-
-
Speno, H.1
Taheri, M.R.2
Sieburth, D.3
Martin, C.T.4
-
31
-
-
0035957058
-
A novel copper A containing menaquinol NO reductase from Bacillus azotoformans
-
DOI 10.1021/bi0020067
-
Suharti, Strampraad, M. J. F., Schroder, I. & de Vries, S. (2001). A novel copper A containing menaquinol NO reductase from Bacillus azotoformans. Biochemistry 40, 2632-2639. (Pubitemid 32171739)
-
(2001)
Biochemistry
, vol.40
, Issue.8
, pp. 2632-2639
-
-
Suharti1
Strampraad, M.J.F.2
Schroder, I.3
De Vries, S.4
-
32
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
DOI 10.1093/molbev/msm092
-
Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA 4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599. (Pubitemid 47236692)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
33
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680. (Pubitemid 24354800)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
34
-
-
0029801773
-
Purification and characterization of chlorite dismutase: A novel oxygen-generating enzyme
-
DOI 10.1007/s002030050390
-
van Ginkel, C. G., Rikken, G. B., Kroon, A. G. M. & Kengen, S. W. M. (1996). Purification and characterization of chlorite dismutase: a novel oxygen-generating enzyme. Arch Microbiol 166, 321-326. (Pubitemid 26400535)
-
(1996)
Archives of Microbiology
, vol.166
, Issue.5
, pp. 321-326
-
-
Van Ginkel, C.G.1
Rikken, G.B.2
Kroon, A.G.M.3
Kengen, S.W.M.4
-
35
-
-
33751585830
-
Microevolution of cytochrome bd oxidase in staphylococci and its implication in resistance to respiratory toxins released by Pseudomonas
-
DOI 10.1128/JB.00858-06
-
Voggu, L., Schlag, S., Biswas, R., Rosenstein, R., Rausch, C. & Gotz, F. (2006). Microevolution of cytochrome bd oxidase in staphylococci and its implication in resistance to respiratory toxins released by Pseudomonas. J Bacteriol 188, 8079-8086. (Pubitemid 44845677)
-
(2006)
Journal of Bacteriology
, vol.188
, Issue.23
, pp. 8079-8086
-
-
Voggu, L.1
Schlag, S.2
Biswas, R.3
Rosenstein, R.4
Rausch, C.5
Gotz, F.6
-
36
-
-
0028174266
-
The CuAsite of the caa3-type oxidase of Bacillus subtilis is a mixed-valence binuclear copper centre
-
DOI 10.1016/0014-5793(94)80182-7
-
von Wachenfeldt, C., de Vries, S. & van der Oost, J. (1994). The CuA site of the caa3-type oxidase of Bacillus subtilis is a mixed-valence binuclear copper centre. FEBS Lett 340, 109-113. (Pubitemid 2053132)
-
(1994)
FEBS Letters
, vol.340
, Issue.1-2
, pp. 109-113
-
-
Von, W.C.1
De Vries, S.2
Van Der Oost, J.3
-
37
-
-
79551503528
-
A new intra-aerobic metabolism in the nitritedependent methane oxidizing bacterium 'Candidatus Methylomirabilis oxyfera'
-
in press
-
Wu, M. L., Ettwig, K. F., Jetten, M. S. M., Strous, M., Keltjens, J. T. & van Niftrik, L. (2011). A new intra-aerobic metabolism in the nitritedependent methane oxidizing bacterium 'Candidatus Methylomirabilis oxyfera'. Biochem Soc Trans (in press).
-
(2011)
Biochem Soc Trans
-
-
Wu, M.L.1
Ettwig, K.F.2
Jetten, M.S.M.3
Strous, M.4
Keltjens, J.T.5
Van Niftrik, L.6
|