Fig mild mottle-associated virus, a novel closterovirus infecting fig

Journal of Plant Pathology

Volumn 92, Issue 1, 2010, Pages 165-172

  Elbeaino, T ^a   Digiaro, M ^a   Heinoun, K ^a   de Stradis, A ^b   Martelli, G P ^b,c  

^a ISTITUTO AGRONOMICO MEDITERRANEO   (Italy)

^b INSTITUTE FOR SUSTAINABLE PLANT PROTECTION   (Italy)

^c UNIVERSITY OF BARI   (Italy)

Author keywords

Cloning and sequencing; Closterovirus; DOP PCR; Fig; Phylogenetic analysis; RT PCR

Indexed keywords

CLOSTEROVIRUS; FIG LEAF MOTTLE-ASSOCIATED VIRUS;

EID: 79551476428     PISSN: 11254653     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (24)

1. Agranovsky A.A., Boyko V.P., Karasev A.V., Koonin E.V., Dolja V.V., 1991. The putative 65K protein of beet yellows closterovirus is a homologue of HSP70 heat shock proteins. Journal of Molecular Biology 217: 603-610.
2. Altschul S.F., Stephen F., Gish W., Miller W., Myers E.W., Lipman D.J., 1990. Basic local alignment search tool. Journal of Molecular Biology 215: 403-410.
3. Cserzo M., Wallin E., Simon I., von Heijne G., Elofsson A., 1997. Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method. Protein Engineering 10: 673-676.
4. Dodds J.A., 1993. DsRNA in diagnosis. In: Matthews R.E.F. (ed.). Diagnosis of Plant Virus Diseases, pp. 273-294. CRC Press, Boca Raton, FL, USA.
5. Dolja V.V., Karasev K., Koonin E.V., 1994. Molecular biology and evolution of closteroviruses: Sophisticated build-up of large RNA genomes. Annual Review of Phytopathology 32: 261-285.
6. Elbeaino T., Digiaro M., De Stradis A., Martelli G.P., 2006. Partial characterization of a closterovirus associated with a chlorotic mottling on fig. Journal of Plant Pathology 88: 187-192.
7. Elbeaino T., Digiaro M., De Stradis A., Martelli G.P., 2007. Identification of a second member of the family Closteroviridae in mosaic-diseased figs. Journal of Plant Pathology 89: 119-124.
8. Elbeaino T., Digiaro M., Alabdullah A., De Stradis A., Minafra A., Mielke N., Castellano M.A., Martelli G.P., 2009. A multipartite single-stranded negative-sense RNA virus is the putative agent of fig mosaic disease. Journal of General Virology 90: 1281-1288.
9. Foissac X., Svanella-Dumas L., Gentit P., Dulucq M.J., Candresse T., 2001. Polyvalent detection of fruit tree Tricho, Capillo and Foveavirus by nested RT-PCR using degenerated and inosine containing primers (DOP RT-PCR). Acta Horticulturae 550: 37-43.
10. Gattoni G., Minafra A., Castellano M.A., De Stradis A., Boscia D., Elbeaino T., Digiaro M., Martelli G.P., 2009. Some properties of Fig latent virus 1, a new member of the family Flexiviridae. Journal of Plant Pathology, 91: 555-564.
11. Karasev A.V., Nikolaeva O.V., Koonin E.V., Gumpf D.J., Garnsey S.M., 1994. Screening of the closterovirus genome by degenerate primer-mediated polymerase chain reaction. Journal of General Virology 75: 1415-1422.
12. Koonin E.V., Dolja V.V., 1993. Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Critical Reviews in Biochemistry and Molecular Biology 28: 375-430.
13. Koonin E.V., 1991. The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. Journal of General Virology 72: 2197-2206.
14. Marck C., 1988. DNA Strider: a "C" programme for the fast analysis of DNA and protein sequences on the Apple Macintosh family computers. Nucleic Acids Research 16: 1829-1836.
15. Martelli G.P., 2009. Fig mosaic disease and associated viruses. In: Hadidi, A., Barba, M., Candresse T., Jelkmann, W., (eds). Virus and Virus-like Diseases of Pome and Stone fruits. APS Press, St. Paul, MN, USA (in press).
16. Martelli G.P., Russo M., 1984. Use of thin sectioning for visualization and identification of plant viruses. Methods in Virology 8: 143-224.
17. Martelli G.P., Agranovsky A.A., Bar-Joseph M., Boscia D., Candresse T., Coutts R.H.A., Dolja V.V., Falk W.B., Gonsalves D., Hu J.S., Jelkmann W., Karasev A.V., Minafra A., Namba S., Vetten H.J., Wisler C.G., Yoshikawa N., 2005. Family Closteroviridae. In: Fauquet C.M., Mayo M.A., Maniloff J., Desselberger U., Ball L.A. (eds). Virus Taxonomy. Eight Report of the International Committee on Taxonomy of Viruses, pp.1077-1087. Elsevier/Academic Press, Amsterdam, The Netherlands.
18. Pearson W.R., Lipman D.J., 1988. Improved tools for biological sequence comparison. Proceedings of the National Academic of Sciences USA 85: 2444-2448.
19. Perrière G., Gouy M., 1996. WWW-Query: An on-line retrieval system for biological sequence banks. Biochimie 78: 364-369.
20. Poch O., Sauvaget I., Delarue M., Tordo N., 1989. Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. The EMBO Journal 8: 3867-3874.
21. Rott M.E., Jelkmann W., 2001. Characterization and detection of several filamentous viruses of cherry: Adaptation of an alternative cloning method (DOP-PCR), and modification of an RNA extraction protocol. European Journal of Plant Pathology 107: 411-420.
22. Saldarelli P., Minafra A., Martelli G.P., Walter B., 1994. Detection of grapevine leafroll-associated closterovirus III by molecular hybridization. Plant Pathology 43: 91-96.
23. Tian T., Klaassen V.A., Soong J., Wisler G., Duffus J.E., Falk B.W., 1996. Generation of cDNAs specific to lettuce infectious yellows closterovirus and other whitefly-transmitted viruses by RT-PCR and degenerated oligonucleotide primers corresponding to the closterovirus gene encoding the heat shock protein 70 homologue. Phytopathology, 86: 1167-1172.
24. Walia J.J., Salem N.M., Falk B.W., 2009. Partial sequence and survey analysis identify a multipartite, negative-sense RNA virus associated with fig mosaic. Plant Disease 93: 4-10.