-
1
-
-
33846785485
-
Large-scale phosphorylation analysis of mouse liver
-
Villen, J., Beausoleil, S. A., Gerber, S. A., Gygi, S. P., Large-scale phosphorylation analysis of mouse liver. Proc. Natl. Acad. Sci. USA 2007, 104, 1488-1493.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 1488-1493
-
-
Villen, J.1
Beausoleil, S.A.2
Gerber, S.A.3
Gygi, S.P.4
-
2
-
-
33847616949
-
Reproducible isolation of distinct, overlapping segments of the phosphoproteome
-
Bodenmiller, B., Mueller, L. N., Mueller, M., Domon, B., Aebersold, R., Reproducible isolation of distinct, overlapping segments of the phosphoproteome. Nat. Methods 2007, 4, 231-237.
-
(2007)
Nat. Methods
, vol.4
, pp. 231-237
-
-
Bodenmiller, B.1
Mueller, L.N.2
Mueller, M.3
Domon, B.4
Aebersold, R.5
-
3
-
-
49949087278
-
Comparative phosphoproteomics of zebrafish Fyn/Yes morpholino knockdown embryos
-
Lemeer, S., Jopling, C., Gouw, J., Mohammed, S. et al., Comparative phosphoproteomics of zebrafish Fyn/Yes morpholino knockdown embryos. Mol. Cell. Proteomics 2008, 7, 2176-2187.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 2176-2187
-
-
Lemeer, S.1
Jopling, C.2
Gouw, J.3
Mohammed, S.4
-
4
-
-
68949212379
-
Lysine acetylation targets protein complexes and co-regulates major cellular functions
-
Choudhary, C., Kumar, C., Gnad, F., Nielsen, M. L. et al., Lysine acetylation targets protein complexes and co-regulates major cellular functions. Science 2009, 325, 834-840.
-
(2009)
Science
, vol.325
, pp. 834-840
-
-
Choudhary, C.1
Kumar, C.2
Gnad, F.3
Nielsen, M.L.4
-
5
-
-
75149167439
-
In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography
-
Ghesquiere, B., Colaert, N., Helsens, K., Dejager, L. et al., In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography. Mol. Cell. Proteomics 2009, 8, 2642-2652.
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2642-2652
-
-
Ghesquiere, B.1
Colaert, N.2
Helsens, K.3
Dejager, L.4
-
6
-
-
70349840621
-
Global analysis of the mitochondrial N-proteome identifies a processing peptidase critical for protein stability
-
Vogtle, F. N., Wortelkamp, S., Zahedi, R. P., Becker, D. et al., Global analysis of the mitochondrial N-proteome identifies a processing peptidase critical for protein stability. Cell 2009, 139, 428-439.
-
(2009)
Cell
, vol.139
, pp. 428-439
-
-
Vogtle, F.N.1
Wortelkamp, S.2
Zahedi, R.P.3
Becker, D.4
-
7
-
-
79952299139
-
Simultaneous glycan-peptide characterization using hydrophilic interaction chromatography and parallel fragmentation by CID, HCD and ETD-MS applied to the N-linked glycoproteome of Campylobacter jejuni
-
Scott, N. E., Parker, B. L., Connolly, A. M., Paulech, J. et al., Simultaneous glycan-peptide characterization using hydrophilic interaction chromatography and parallel fragmentation by CID, HCD and ETD-MS applied to the N-linked glycoproteome of Campylobacter jejuni. Mol. Cell. Proteomics 2010.
-
(2010)
Mol. Cell. Proteomics
-
-
Scott, N.E.1
Parker, B.L.2
Connolly, A.M.3
Paulech, J.4
-
8
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
Elias, J. E., Gygi, S. P., Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 2007, 4, 207-214.
-
(2007)
Nat. Methods
, vol.4
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
9
-
-
77149162668
-
Peptide and protein quantification: A map of the minefield
-
Vaudel, M., Sickmann, A., Martens, L., Peptide and protein quantification: A map of the minefield. Proteomics 2010, 10, 650-670.
-
(2010)
Proteomics
, vol.10
, pp. 650-670
-
-
Vaudel, M.1
Sickmann, A.2
Martens, L.3
-
10
-
-
34748916981
-
Quantitative mass spectrometry in proteomics: a critical review
-
Bantscheff, M., Schirle, M., Sweetman, G., Rick, J., Kuster, B., Quantitative mass spectrometry in proteomics: a critical review. Anal. Bioanal. Chem. 2007, 389, 1017-1031.
-
(2007)
Anal. Bioanal. Chem.
, vol.389
, pp. 1017-1031
-
-
Bantscheff, M.1
Schirle, M.2
Sweetman, G.3
Rick, J.4
Kuster, B.5
-
11
-
-
36349019291
-
Enhanced N-glycosylation site analysis of sialoglycopeptides by strong cation exchange prefractionation applied to platelet plasma membranes
-
Lewandrowski, U., Zahedi, R. P., Moebius, J., Walter, U., Sickmann, A., Enhanced N-glycosylation site analysis of sialoglycopeptides by strong cation exchange prefractionation applied to platelet plasma membranes. Mol. Cell. Proteomics 2007, 6, 1933-1941.
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 1933-1941
-
-
Lewandrowski, U.1
Zahedi, R.P.2
Moebius, J.3
Walter, U.4
Sickmann, A.5
-
12
-
-
0038699625
-
Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry
-
Zhang, H., Li, X. J., Martin, D. B., Aebersold, R., Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat. Biotechnol. 2003, 21, 660-666.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 660-666
-
-
Zhang, H.1
Li, X.J.2
Martin, D.B.3
Aebersold, R.4
-
13
-
-
0037685263
-
Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins
-
Kaji, H., Saito, H., Yamauchi, Y., Shinkawa, T. et al., Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins. Nat. Biotechnol. 2003, 21, 667-672.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 667-672
-
-
Kaji, H.1
Saito, H.2
Yamauchi, Y.3
Shinkawa, T.4
-
14
-
-
0025804150
-
Purification of the oligosaccharide-cleaving enzymes of Flavobacterium meningosepticum
-
Plummer, T. H., Jr., Tarentino, A. L., Purification of the oligosaccharide-cleaving enzymes of Flavobacterium meningosepticum. Glycobiology 1991, 1, 257-263.
-
(1991)
Glycobiology
, vol.1
, pp. 257-263
-
-
Plummer Jr, T.H.1
Tarentino, A.L.2
-
15
-
-
39749087682
-
Phosphoproteome of resting human platelets
-
Zahedi, R. P., Lewandrowski, U., Wiesner, J., Wortelkamp, S. et al., Phosphoproteome of resting human platelets. J. Proteome Res. 2008, 7, 526-534.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 526-534
-
-
Zahedi, R.P.1
Lewandrowski, U.2
Wiesner, J.3
Wortelkamp, S.4
-
16
-
-
67651056213
-
Platelet membrane proteomics: a novel repository for functional research
-
Lewandrowski, U., Wortelkamp, S., Lohrig, K., Zahedi, R. P. et al., Platelet membrane proteomics: a novel repository for functional research. Blood 2009, 114, e10-e19.
-
(2009)
Blood
, vol.114
-
-
Lewandrowski, U.1
Wortelkamp, S.2
Lohrig, K.3
Zahedi, R.P.4
-
17
-
-
0344212101
-
An improved method for tracking and reducing the void volume in nano HPLC-MS with micro trapping columns
-
Mitulovic, G., Smoluch, M., Chervet, J. P., Steinmacher, I. et al., An improved method for tracking and reducing the void volume in nano HPLC-MS with micro trapping columns. Anal. Bioanal. Chem. 2003, 376, 946-951.
-
(2003)
Anal. Bioanal. Chem.
, vol.376
, pp. 946-951
-
-
Mitulovic, G.1
Smoluch, M.2
Chervet, J.P.3
Steinmacher, I.4
-
18
-
-
34447290244
-
Silver- and Coomassie-staining protocols: detection limits and compatibility with ESI MS
-
Winkler, C., Denker, K., Wortelkamp, S., Sickmann, A., Silver- and Coomassie-staining protocols: detection limits and compatibility with ESI MS. Electrophoresis 2007, 28, 2095-2099.
-
(2007)
Electrophoresis
, vol.28
, pp. 2095-2099
-
-
Winkler, C.1
Denker, K.2
Wortelkamp, S.3
Sickmann, A.4
-
19
-
-
77952705206
-
Homologous desensitization of guanylyl cyclase A, the receptor for atrial natriuretic peptide, is associated with a complex phosphorylation pattern
-
Schroter, J., Zahedi, R. P., Hartmann, M., Gassner, B. et al., Homologous desensitization of guanylyl cyclase A, the receptor for atrial natriuretic peptide, is associated with a complex phosphorylation pattern. FEBS J. 2010, 277, 2440-2453.
-
(2010)
FEBS J.
, vol.277
, pp. 2440-2453
-
-
Schroter, J.1
Zahedi, R.P.2
Hartmann, M.3
Gassner, B.4
-
20
-
-
67650735898
-
Preventing carryover of peptides and proteins in nano LC-MS separations
-
Mitulovic, G., Stingl, C., Steinmacher, I., Hudecz, O. et al., Preventing carryover of peptides and proteins in nano LC-MS separations. Anal. Chem. 2009, 81, 5955-5960.
-
(2009)
Anal. Chem.
, vol.81
, pp. 5955-5960
-
-
Mitulovic, G.1
Stingl, C.2
Steinmacher, I.3
Hudecz, O.4
-
21
-
-
54949129419
-
ProteoWizard: open source software for rapid proteomics tools development
-
Kessner, D., Chambers, M., Burke, R., Agus, D., Mallick, P., ProteoWizard: open source software for rapid proteomics tools development. Bioinformatics 2008, 24, 2534-2536.
-
(2008)
Bioinformatics
, vol.24
, pp. 2534-2536
-
-
Kessner, D.1
Chambers, M.2
Burke, R.3
Agus, D.4
Mallick, P.5
-
22
-
-
79951750784
-
SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches
-
doi: 10.1002/pmic.201000595.
-
Vaudel, M., Barsnes, H., Berven, F., Sickmann, A., Martens, L., SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches. Proteomics 2011, 11, doi: 10.1002/pmic.201000595.
-
(2011)
Proteomics
, vol.11
-
-
Vaudel, M.1
Barsnes, H.2
Berven, F.3
Sickmann, A.4
Martens, L.5
-
23
-
-
77950650434
-
XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results
-
Muth, T., Vaudel, M., Barsnes, H., Martens, L., Sickmann, A., XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results. Proteomics 2010, 10, 1522-1524.
-
(2010)
Proteomics
, vol.10
, pp. 1522-1524
-
-
Muth, T.1
Vaudel, M.2
Barsnes, H.3
Martens, L.4
Sickmann, A.5
-
24
-
-
68049100378
-
OMSSA parser: an open-source library to parse and extract data from OMSSA MS/MS search results
-
Barsnes, H., Huber, S., Sickmann, A., Eidhammer, I., Martens, L., OMSSA parser: an open-source library to parse and extract data from OMSSA MS/MS search results. Proteomics 2009, 9, 3772-3774.
-
(2009)
Proteomics
, vol.9
, pp. 3772-3774
-
-
Barsnes, H.1
Huber, S.2
Sickmann, A.3
Eidhammer, I.4
Martens, L.5
-
25
-
-
79952301788
-
Quality control of nano-LC-MS systems using stable isotope-coded peptides
-
doi: 10.1002/pmic.201000604.
-
Burkhart, J. M., Premsler, T., Sickmann, A., Quality control of nano-LC-MS systems using stable isotope-coded peptides. Proteomics 2011, 11, doi: 10.1002/pmic.201000604.
-
(2011)
Proteomics
, vol.11
-
-
Burkhart, J.M.1
Premsler, T.2
Sickmann, A.3
-
26
-
-
0035260293
-
Phosphoamino acid analysis
-
Sickmann, A., Meyer, H. E., Phosphoamino acid analysis. Proteomics 2001, 1, 200-206.
-
(2001)
Proteomics
, vol.1
, pp. 200-206
-
-
Sickmann, A.1
Meyer, H.E.2
-
27
-
-
77949800377
-
Ethylenediaminetetraacetic acid increases identification rate of phosphoproteomics in real biological samples
-
Nakamura, T., Myint, K. T., Oda, Y., Ethylenediaminetetraacetic acid increases identification rate of phosphoproteomics in real biological samples. J. Proteome Res. 2010, 9, 1385-1391.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 1385-1391
-
-
Nakamura, T.1
Myint, K.T.2
Oda, Y.3
-
28
-
-
1442349926
-
Improved detection of multi-phosphorylated peptides in the presence of phosphoric acid in liquid chromatography/mass spectrometry
-
Kim, J., Camp, D. G., 2nd, Smith, R. D., Improved detection of multi-phosphorylated peptides in the presence of phosphoric acid in liquid chromatography/mass spectrometry. J. Mass Spectrom. 2004, 39, 208-215.
-
(2004)
J. Mass Spectrom.
, vol.39
, pp. 208-215
-
-
Kim, J.1
Camp 2nd, D.G.2
Smith, R.D.3
-
29
-
-
60849090764
-
Citrate boosts the performance of phosphopeptide analysis by UPLC-ESI-MS/MS
-
Winter, D., Seidler, J., Ziv, Y., Shiloh, Y., Lehmann, W. D., Citrate boosts the performance of phosphopeptide analysis by UPLC-ESI-MS/MS. J. Proteome Res. 2009, 8, 418-424.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 418-424
-
-
Winter, D.1
Seidler, J.2
Ziv, Y.3
Shiloh, Y.4
Lehmann, W.D.5
-
30
-
-
0026698693
-
A method for determination of N-glycosylation sites in glycoproteins by collision-induced dissociation analysis in fast atom bombardment mass spectrometry: identification of the positions of carbohydrate-linked asparagine in recombinant alpha-amylase by treatment with peptide-N-glycosidase F in 18O-labeled water
-
Gonzalez, J., Takao, T., Hori, H., Besada, V. et al., A method for determination of N-glycosylation sites in glycoproteins by collision-induced dissociation analysis in fast atom bombardment mass spectrometry: identification of the positions of carbohydrate-linked asparagine in recombinant alpha-amylase by treatment with peptide-N-glycosidase F in 18O-labeled water. Anal. Biochem. 1992, 205, 151-158.
-
(1992)
Anal. Biochem.
, vol.205
, pp. 151-158
-
-
Gonzalez, J.1
Takao, T.2
Hori, H.3
Besada, V.4
-
31
-
-
0023109951
-
Deamidation, isomerization, and racemization at asparaginyl and aspartyl residues in peptides. Succinimide-linked reactions that contribute to protein degradation
-
Geiger, T., Clarke, S., Deamidation, isomerization, and racemization at asparaginyl and aspartyl residues in peptides. Succinimide-linked reactions that contribute to protein degradation. J. Biol. Chem. 1987, 262, 785-794.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 785-794
-
-
Geiger, T.1
Clarke, S.2
-
32
-
-
0025788030
-
Effects of amino acid sequence, buffers, and ionic strength on the rate and mechanism of deamidation of asparagine residues in small peptides
-
Tyler-Cross, R., Schirch, V., Effects of amino acid sequence, buffers, and ionic strength on the rate and mechanism of deamidation of asparagine residues in small peptides. J. Biol. Chem. 1991, 266, 22549-22556.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 22549-22556
-
-
Tyler-Cross, R.1
Schirch, V.2
|