메뉴 건너뛰기




Volumn 9, Issue 10, 1999, Pages 924-935

Genomic analysis of Caenorhabditis elegans reveals ancient families of retroviral-like elements

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CAENORHABDITIS ELEGANS; CELL LINEAGE; GENE SEQUENCE; LONG TERMINAL REPEAT; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DOMAIN; RETROPOSON; RETROVIRUS; TRANSPOSON;

EID: 0032741264     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.9.10.924     Document Type: Article
Times cited : (81)

References (48)
  • 1
    • 0031731595 scopus 로고    scopus 로고
    • Regulation of gene expression by HTLV-I tax protein
    • Bex, F. and R.B. Gaynor. 1998. Regulation of gene expression by HTLV-I Tax protein. Methods 16: 83-94.
    • (1998) Methods , vol.16 , pp. 83-94
    • Bex, F.1    Gaynor, R.B.2
  • 2
    • 0029796901 scopus 로고    scopus 로고
    • DNA sequence insertion and evolutionary variation in gene regulation
    • Britten, R.J. 1996. DNA sequence insertion and evolutionary variation in gene regulation. Proc. Natl. Acad. Sci. 93: 9374-9377.
    • (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 9374-9377
    • Britten, R.J.1
  • 3
    • 0031593249 scopus 로고    scopus 로고
    • Mobile elements inserted in the distant past have taken on important functions
    • _. 1997. Mobile elements inserted in the distant past have taken on important functions. Gene 205: 177-182.
    • (1997) Gene , vol.205 , pp. 177-182
  • 4
    • 0030005868 scopus 로고    scopus 로고
    • Relationships between transposable elements based upon the integrase-transposase domains: Is there a common ancestor?
    • Capy, P., R. Vitalis, T. Langin, D. Higuet, and C. Bazin. 1996. Relationships between transposable elements based upon the integrase-transposase domains: Is there a common ancestor? J. Mol. Evol. 42: 359-368.
    • (1996) J. Mol. Evol. , vol.42 , pp. 359-368
    • Capy, P.1    Vitalis, R.2    Langin, T.3    Higuet, D.4    Bazin, C.5
  • 5
    • 0031466673 scopus 로고    scopus 로고
    • Do the integrases of LTR-retrotransposons and class II element transposases have a common ancestor?
    • Capy, P., T. Langin, D. Higuet, P. Maurer, and C. Bazin. 1997. Do the integrases of LTR-retrotransposons and class II element transposases have a common ancestor? Genetica 100: 63-72.
    • (1997) Genetica , vol.100 , pp. 63-72
    • Capy, P.1    Langin, T.2    Higuet, D.3    Maurer, P.4    Bazin, C.5
  • 7
    • 0004131381 scopus 로고    scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Coffin, J.M., S.H. Hughes, and H.E. Varmus. 1997. Retroviruses. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1997) Retroviruses
    • Coffin, J.M.1    Hughes, S.H.2    Varmus, H.E.3
  • 8
    • 0000616288 scopus 로고
    • Nucleotide sequence of the transposable element, BEL, of Drosophila melanogaster
    • Davis, P.S. and, B.H. Judd. 1995. Nucleotide sequence of the transposable element, BEL, of Drosophila melanogaster. Drosoph. Inf. Serv. 76: 134-136.
    • (1995) Drosoph. Inf. Serv. , vol.76 , pp. 134-136
    • Davis, P.S.1    Judd, B.H.2
  • 9
    • 0026594519 scopus 로고
    • Unusual features of the retroid element PAT from the nematode Panagrellus redivivus
    • de Chastonay, Y., H. Felder, C. Link, P. Aeby, H. Tobler, and F. Muller. 1992. Unusual features of the retroid element PAT from the nematode Panagrellus redivivus. Nucleic Acids Res. 20: 1623-1628.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1623-1628
    • De Chastonay, Y.1    Felder, H.2    Link, C.3    Aeby, P.4    Tobler, H.5    Muller, F.6
  • 10
    • 0032167620 scopus 로고    scopus 로고
    • A hotspot for the Drosophila gypsy retroelement in the ovo locus
    • Dej, K.J., T. Gerasimova, V.G. Corces, and J.D. Boeke. 1998. A hotspot for the Drosophila gypsy retroelement in the ovo locus. Nucleic Acids Res. 26: 4019-4025.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 4019-4025
    • Dej, K.J.1    Gerasimova, T.2    Corces, V.G.3    Boeke, J.D.4
  • 12
    • 0003800695 scopus 로고
    • Documentation, code and data available from anonymous FTP servers at cele.mrc-lmb.cam.ac.uk and ncbi.nlm.nih.gov.
    • Durbin, R. and J. Thierry Mieg. 1991. A C. elegans database. Documentation, code and data available from anonymous FTP servers at lirmm.lirmm.fr, cele.mrc-lmb.cam.ac.uk and ncbi.nlm.nih.gov.
    • (1991) A C. elegans Database
    • Durbin, R.1    Thierry Mieg, J.2
  • 13
    • 0028102792 scopus 로고
    • Tas, a retrotransposon from the parasitic nematode Ascaris lumbricoides
    • Felder, H., A. Herzceg, Y. de Chastonay, P. Aeby, H. Tobler, and F. Muller. 1994. Tas, a retrotransposon from the parasitic nematode Ascaris lumbricoides. Gene 149: 219-225.
    • (1994) Gene , vol.149 , pp. 219-225
    • Felder, H.1    Herzceg, A.2    De Chastonay, Y.3    Aeby, P.4    Tobler, H.5    Muller, F.6
  • 15
    • 0023058739 scopus 로고
    • Repetitive DNA and chromosome evolution in plants
    • Flavell, R.B. 1986. Repetitive DNA and chromosome evolution in plants. Phil. Trans. R. Soc. Lond. B. Biol. Sci. 312: 227-242.
    • (1986) Phil. Trans. R. Soc. Lond. B. Biol. Sci. , vol.312 , pp. 227-242
    • Flavell, R.B.1
  • 17
    • 0003048945 scopus 로고
    • Mobile DNA elements and spontaneous gene mutation
    • (ed. M.E. Lambert, J.F. McDonald, and I.B. Weinstein), Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
    • Green, M.M. 1988. Mobile DNA elements and spontaneous gene mutation. In Eukaryotic transposable elements as mutagenic agents (ed. M.E. Lambert, J.F. McDonald, and I.B. Weinstein), pp. 41-50. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
    • (1988) Eukaryotic Transposable Elements as Mutagenic Agents , pp. 41-50
    • Green, M.M.1
  • 19
    • 0032619577 scopus 로고    scopus 로고
    • A comparative analysis of computational motif-detection methods
    • Hudak, J. and M.A. McClure. 1999. A comparative analysis of computational motif-detection methods [In Process Citation]. Pac. Symp. Biocomput.4: 138-149.
    • (1999) Pac. Symp. Biocomput. , vol.4 , pp. 138-149
    • Hudak, J.1    McClure, M.A.2
  • 20
    • 0031749010 scopus 로고    scopus 로고
    • Evidence for the role of recombination in the regulatory evolution of Saccharomyces cerevisiae Ty elements
    • Jordan, I.K. and J.F. McDonald. 1998. Evidence for the role of recombination in the regulatory evolution of Saccharomyces cerevisiae Ty elements. J. Mol. Evol. 47: 14-20.
    • (1998) J. Mol. Evol. , vol.47 , pp. 14-20
    • Jordan, I.K.1    McDonald, J.F.2
  • 21
    • 0033058901 scopus 로고    scopus 로고
    • Phylogenetic perspective reveals abundant Ty1/Ty2 hybrid elements in the Saccharomyces cerevisiae genome
    • _. 1999a. Phylogenetic perspective reveals abundant Ty1/Ty2 hybrid elements in the Saccharomyces cerevisiae genome Mol. Biol. Evol. 16: 419-422.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 419-422
  • 22
    • 0032926608 scopus 로고    scopus 로고
    • Tempo and mode of Ty element evolution in saccharomyces cerevisiae
    • _. 1999b. Tempo and mode of Ty element evolution in saccharomyces cerevisiae. Genetics 151: 1341-1351.
    • (1999) Genetics , vol.151 , pp. 1341-1351
  • 24
    • 0031832807 scopus 로고    scopus 로고
    • Transposable elements and genome organization: A comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence
    • Kim, J.M., S. Vanguri, J.D. Boeke, A. Gabriel, and D.F. Voytas. 1998. Transposable elements and genome organization: A comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res. 8: 464-478.
    • (1998) Genome Res. , vol.8 , pp. 464-478
    • Kim, J.M.1    Vanguri, S.2    Boeke, J.D.3    Gabriel, A.4    Voytas, D.F.5
  • 25
    • 0026356891 scopus 로고
    • Predicting coiled coils from protein sequences
    • Lupas, A., M. Van Dyke, and J. Stock. 1991. Predicting coiled coils from protein sequences. Science 252: 1162-1164.
    • (1991) Science , vol.252 , pp. 1162-1164
    • Lupas, A.1    Van Dyke, M.2    Stock, J.3
  • 26
    • 0031762153 scopus 로고    scopus 로고
    • Evolutionary relationships among the members of an ancient class of non-LTR retrotransposons found in the nematode Caenorhabditis elegans
    • Marin, I., P. Plata-Rengifo, M. Labrador, and A. Fontdevila. 1998. Evolutionary relationships among the members of an ancient class of non-LTR retrotransposons found in the nematode Caenorhabditis elegans. Mol. Biol. Evol. 15: 1390-1402.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1390-1402
    • Marin, I.1    Plata-Rengifo, P.2    Labrador, M.3    Fontdevila, A.4
  • 27
    • 0025996907 scopus 로고
    • Evolution of retroposons by acquisition or deletion of retrovirus-like genes
    • McClure, M.A. 1991. Evolution of retroposons by acquisition or deletion of retrovirus-like genes. Mol. Biol. Evol. 8: 835-856.
    • (1991) Mol. Biol. Evol. , vol.8 , pp. 835-856
    • McClure, M.A.1
  • 28
    • 38249013478 scopus 로고
    • Sequence analysis of eukaryotic retroid proteins
    • _. 1992. Sequence analysis of eukaryotic retroid proteins. Mathl. Comput. Modelling 16: 121-136.
    • (1992) Mathl. Comput. Modelling , vol.16 , pp. 121-136
  • 29
    • 0002636257 scopus 로고
    • Evolutionary history of reverse transcriptase
    • (ed. A.M. Skalka and S.P. Goff), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • _. 1993. Evolutionary history of reverse transcriptase. In Reverse transcriptase (ed. A.M. Skalka and S.P. Goff), pp. 425-444. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1993) Reverse Transcriptase , pp. 425-444
  • 30
    • 0023990633 scopus 로고
    • Sequence comparisons of retroviral proteins: Relative rates of change and general phylogeny
    • McClure, M.A., M.S. Johnson, D.F. Feng, and R.F. Doolittle. 1988. Sequence comparisons of retroviral proteins: Relative rates of change and general phylogeny. Proc. Natl. Acad. Sci. 85: 2469-2473.
    • (1988) Proc. Natl. Acad. Sci. , vol.85 , pp. 2469-2473
    • McClure, M.A.1    Johnson, M.S.2    Feng, D.F.3    Doolittle, R.F.4
  • 31
    • 0027741467 scopus 로고
    • Evolution and consequences of transposable elements
    • McDonald, J.F. 1993. Evolution and consequences of transposable elements. Curr. Opin. Genet. Dev. 3: 855-864.
    • (1993) Curr. Opin. Genet. Dev. , vol.3 , pp. 855-864
    • McDonald, J.F.1
  • 32
    • 0031929319 scopus 로고    scopus 로고
    • Transposable elements, gene silencing and macroevolution
    • _. 1998. Transposable elements, gene silencing and macroevolution. Trends Ecol. Evol. 13: 94-95.
    • (1998) Trends Ecol. Evol. , vol.13 , pp. 94-95
  • 33
    • 0031622681 scopus 로고    scopus 로고
    • Retrotransposal integration of mobile genetic elements in human diseases
    • Miki, Y. 1998. Retrotransposal integration of mobile genetic elements in human diseases. J. Hum. Genet. 43: 77-84.
    • (1998) J. Hum. Genet. , vol.43 , pp. 77-84
    • Miki, Y.1
  • 34
    • 0009741355 scopus 로고    scopus 로고
    • The impact of transposable elements on genome evolution in animals and plants
    • (ed. J. Tomiuk, K. Woerhm, and A. Sentker), Birkhauser Verlag, Basel, Switzerland
    • Miller, W.J., E. Kruckenhauser, and W. Pinsker. 1996. The impact of transposable elements on genome evolution in animals and plants. In Transgenic Organisms-Biological and Social Implications (ed. J. Tomiuk, K. Woerhm, and A. Sentker), pp. 21-34. Birkhauser Verlag, Basel, Switzerland.
    • (1996) Transgenic Organisms-biological and Social Implications , pp. 21-34
    • Miller, W.J.1    Kruckenhauser, E.2    Pinsker, W.3
  • 35
    • 0026775916 scopus 로고
    • Human furin is a calcium-dependent serine endoprotease that recognizes the sequence Arg-X-X-Arg and efficiently cleaves anthrax toxin protective antigen
    • Molloy, S.S., P.A. Bresnahan, S.H. Leppla, K.R. Klimpel, and G. Thomas. 1992. Human furin is a calcium-dependent serine endoprotease that recognizes the sequence Arg-X-X-Arg and efficiently cleaves anthrax toxin protective antigen. J. Biol. Chem. 267: 16396-16402.
    • (1992) J. Biol. Chem. , vol.267 , pp. 16396-16402
    • Molloy, S.S.1    Bresnahan, P.A.2    Leppla, S.H.3    Klimpel, K.R.4    Thomas, G.5
  • 36
    • 0030614959 scopus 로고    scopus 로고
    • Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
    • Nielsen, H., J. Engelbrecht, S. Brunak, and G. von Heijne. 1997. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 10: 1-6.
    • (1997) Protein Eng. , vol.10 , pp. 1-6
    • Nielsen, H.1    Engelbrecht, J.2    Brunak, S.3    Von Heijne, G.4
  • 37
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page, R.D. 1996. TreeView: An application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12: 357-358.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.1
  • 38
    • 0028902788 scopus 로고
    • Transmemhrane helices predicted at 95% accuracy
    • Rost, B., R. Casadio, P. Fariselli, and C. Sander. 1995. Transmemhrane helices predicted at 95% accuracy. Protein Sci. 4: 521-533.
    • (1995) Protein Sci. , vol.4 , pp. 521-533
    • Rost, B.1    Casadio, R.2    Fariselli, P.3    Sander, C.4
  • 41
    • 0028618270 scopus 로고
    • Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames
    • Solovyev, V.V., A.A. Salamov, and C.B. Lawrence. 1994. Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames. Nucleic Acids Res. 22: 5156-5163.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5156-5163
    • Solovyev, V.V.1    Salamov, A.A.2    Lawrence, C.B.3
  • 43
    • 0022349108 scopus 로고
    • Reverse transcription in the eukaryotic genome: Rretroviruses, pararetroviruses, retrotransposons, and retrotranscripts
    • Temin, H.M. 1985. Reverse transcription in the eukaryotic genome: Rretroviruses, pararetroviruses, retrotransposons, and retrotranscripts. Mol. Biol. Evol. 2: 455-468.
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 455-468
    • Temin, H.M.1
  • 44
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins. 1997. The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 45
    • 0023691433 scopus 로고
    • Similarity of reverse transcriptase-like sequences of viruses, transposable elements, and mitochondrial introns
    • Xiong, Y. and T.H. Eickbush. 1988. Similarity of reverse transcriptase-like sequences of viruses, transposable elements, and mitochondrial introns. Mol. Biol. Evol. 5: 675-690.
    • (1988) Mol. Biol. Evol. , vol.5 , pp. 675-690
    • Xiong, Y.1    Eickbush, T.H.2
  • 46
    • 0025006614 scopus 로고
    • Origin and evolution of retroelements based upon their reverse transcriptase sequences
    • _. 1990. Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J. 9: 3353-3362.
    • (1990) EMBO J. , vol.9 , pp. 3353-3362
  • 47
    • 0027281011 scopus 로고
    • Pao, a highly divergent retrotransposable element from Bombyx mori containing long terminal repeats with tandem copies of the putative R region
    • Xiong, Y., W.D. Burke, and T.H. Eickbush. 1993. Pao, a highly divergent retrotransposable element from Bombyx mori containing long terminal repeats with tandem copies of the putative R region. Nucleic Acids Res. 21: 2117-2123.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 2117-2123
    • Xiong, Y.1    Burke, W.D.2    Eickbush, T.H.3
  • 48
    • 0030840954 scopus 로고    scopus 로고
    • Cytosine methylation and the ecology of intragenomic parasites
    • Yoder, J.A., C.P. Walsh, and T.H. Bestor. 1997. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet. 13: 335-340.
    • (1997) Trends Genet. , vol.13 , pp. 335-340
    • Yoder, J.A.1    Walsh, C.P.2    Bestor, T.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.