메뉴 건너뛰기




Volumn 84, Issue 2, 2011, Pages 234-242

Development of an oligonucleotide microarray for the detection and monitoring of marine dinoflagellates

Author keywords

Dinoflagellates; HAB; ITS1 5.8S ITS2; Microarray; Monitoring

Indexed keywords

GENOMIC DNA; INTERNAL TRANSCRIBED SPACER 1; INTERNAL TRANSCRIBED SPACER 2; RIBOSOME DNA; SEA WATER;

EID: 79251605560     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2010.11.024     Document Type: Article
Times cited : (40)

References (34)
  • 1
    • 0000690395 scopus 로고    scopus 로고
    • Analysis of Gymnodinium catenatum (Dinophyceae) using sequences of the 5.8S rDNA-ITS regions and random amplified polymorphic DNA
    • Adachi M., Sako Y., Ispida Y. Analysis of Gymnodinium catenatum (Dinophyceae) using sequences of the 5.8S rDNA-ITS regions and random amplified polymorphic DNA. Fish. Sci. 1997, 63:701-707.
    • (1997) Fish. Sci. , vol.63 , pp. 701-707
    • Adachi, M.1    Sako, Y.2    Ispida, Y.3
  • 2
    • 33748783326 scopus 로고    scopus 로고
    • Fiber-optic microarray for simultaneous detection of multiple harmful algal bloom species
    • Ahn S., Kulis D.M., Erdner D.L., Anderson D.M., Walt D.R. Fiber-optic microarray for simultaneous detection of multiple harmful algal bloom species. Appl. Environ. Microbiol. 2006, 72:5742-5749.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5742-5749
    • Ahn, S.1    Kulis, D.M.2    Erdner, D.L.3    Anderson, D.M.4    Walt, D.R.5
  • 4
    • 3042855581 scopus 로고    scopus 로고
    • Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression
    • Chou C.C., Chen C.H., Lee T.T., Peck K. Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression. Nucleic Acids Res. 2004, 32:e99.
    • (2004) Nucleic Acids Res. , vol.32
    • Chou, C.C.1    Chen, C.H.2    Lee, T.T.3    Peck, K.4
  • 5
    • 33644865858 scopus 로고    scopus 로고
    • Improved quantitative real-time PCR assays for enumeration of harmful algal species in field samples using an exogenous DNA reference standard
    • Coyne K.J., Handy S.M., Demir E., Whereat E.B., Hutchins D.A., Portune K.J., Doblin M.A., Cary S.C. Improved quantitative real-time PCR assays for enumeration of harmful algal species in field samples using an exogenous DNA reference standard. Limnol. Oceanogr. Meth. 2005, 3:381-391.
    • (2005) Limnol. Oceanogr. Meth. , vol.3 , pp. 381-391
    • Coyne, K.J.1    Handy, S.M.2    Demir, E.3    Whereat, E.B.4    Hutchins, D.A.5    Portune, K.J.6    Doblin, M.A.7    Cary, S.C.8
  • 6
    • 77349117337 scopus 로고    scopus 로고
    • Evaluation of locked nucleic acids for signal enhancement of oligonucleotide probes for microalgae immobilised on solid surfaces
    • Diercks S., Gescher C., Metfies K., Medlin L.K. Evaluation of locked nucleic acids for signal enhancement of oligonucleotide probes for microalgae immobilised on solid surfaces. J. Appl. Phycol. 2009, 21:657-668.
    • (2009) J. Appl. Phycol. , vol.21 , pp. 657-668
    • Diercks, S.1    Gescher, C.2    Metfies, K.3    Medlin, L.K.4
  • 7
    • 33644852180 scopus 로고    scopus 로고
    • Molecular quantification of toxic Alexandrium fundyense in the Gulf of Maine using real-time PCR
    • Dyhrman S.T., Erdner D., La Du J., Galac M., Anderson D.M. Molecular quantification of toxic Alexandrium fundyense in the Gulf of Maine using real-time PCR. Harmful Algae 2006, 5:242-250.
    • (2006) Harmful Algae , vol.5 , pp. 242-250
    • Dyhrman, S.T.1    Erdner, D.2    La Du, J.3    Galac, M.4    Anderson, D.M.5
  • 9
    • 77349101355 scopus 로고    scopus 로고
    • Analysis of rRNA gene content in the Mediterranean dinoflagellate Alexandrium catenella and Alexandrium taylori: implications for the quantitative real-time PCR-based monitoring methods
    • Galluzzi L., Bertozzini E., Penna A., Perini F., Garcés E., Magnani M. Analysis of rRNA gene content in the Mediterranean dinoflagellate Alexandrium catenella and Alexandrium taylori: implications for the quantitative real-time PCR-based monitoring methods. J. Appl. Phycol. 2010, 22:1-9.
    • (2010) J. Appl. Phycol. , vol.22 , pp. 1-9
    • Galluzzi, L.1    Bertozzini, E.2    Penna, A.3    Perini, F.4    Garcés, E.5    Magnani, M.6
  • 11
    • 2342541675 scopus 로고    scopus 로고
    • Development of a real-time PCR assay for rapid detection and quantification of Alexandrium minutum (a Dinoflagellate)
    • Galluzzi L., Penna A., Bertozzini E., Vila M., Garces E., Magnani M. Development of a real-time PCR assay for rapid detection and quantification of Alexandrium minutum (a Dinoflagellate). Appl. Environ. Microbiol. 2004, 70:1199-1206.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 1199-1206
    • Galluzzi, L.1    Penna, A.2    Bertozzini, E.3    Vila, M.4    Garces, E.5    Magnani, M.6
  • 12
    • 43049108792 scopus 로고    scopus 로고
    • The ALEX CHIP-Development of a DNA chip for identification and monitoring of Alexandrium
    • Gescher C., Metfies K., Medlin L.K. The ALEX CHIP-Development of a DNA chip for identification and monitoring of Alexandrium. Harmful Algae 2008, 7:485-494.
    • (2008) Harmful Algae , vol.7 , pp. 485-494
    • Gescher, C.1    Metfies, K.2    Medlin, L.K.3
  • 13
    • 19944381686 scopus 로고    scopus 로고
    • Using fluorescently-labelled rRNA probes for hierarchical estimation of phytoplankton diversity - a mini-review
    • Groben R., John U., Eller G., Lange M., Medlin L.K. Using fluorescently-labelled rRNA probes for hierarchical estimation of phytoplankton diversity - a mini-review. Nova Hedwig. 2004, 79:313-320.
    • (2004) Nova Hedwig. , vol.79 , pp. 313-320
    • Groben, R.1    John, U.2    Eller, G.3    Lange, M.4    Medlin, L.K.5
  • 14
    • 34548017376 scopus 로고    scopus 로고
    • Influence of temperature, salinity and nutrient limitation on yessotoxin production and release by the dinoflagellate Protoceratium reticulatum in batch-cultures
    • Guerrini F., Ciminiello P., Dell'Aversano C., Tartaglione L., Fattorusso E., Boni L., Pistocchi R. Influence of temperature, salinity and nutrient limitation on yessotoxin production and release by the dinoflagellate Protoceratium reticulatum in batch-cultures. Harmful Algae 2007, 6:707-717.
    • (2007) Harmful Algae , vol.6 , pp. 707-717
    • Guerrini, F.1    Ciminiello, P.2    Dell'Aversano, C.3    Tartaglione, L.4    Fattorusso, E.5    Boni, L.6    Pistocchi, R.7
  • 17
    • 33748711816 scopus 로고    scopus 로고
    • Simultaneous enumeration of multiple raphidophyte species by quantitative real-time PCR: capabilities and limitations
    • Handy S.M., Hutchins D.A., Cary S.C., Coyne K.J. Simultaneous enumeration of multiple raphidophyte species by quantitative real-time PCR: capabilities and limitations. Limnol. Oceanogr. Meth. 2006, 4:193-204.
    • (2006) Limnol. Oceanogr. Meth. , vol.4 , pp. 193-204
    • Handy, S.M.1    Hutchins, D.A.2    Cary, S.C.3    Coyne, K.J.4
  • 18
    • 58149346184 scopus 로고    scopus 로고
    • Phylogenetic relationships of yessotoxin-producing dinoflagellates, based on the large subunit and internal transcribed spacer ribosomal DNA domains
    • Howard M.D., Smith G.J., Kudela R.M. Phylogenetic relationships of yessotoxin-producing dinoflagellates, based on the large subunit and internal transcribed spacer ribosomal DNA domains. Appl. Environ. Microbiol. 2009, 75:54-63.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 54-63
    • Howard, M.D.1    Smith, G.J.2    Kudela, R.M.3
  • 19
    • 32844458773 scopus 로고    scopus 로고
    • A low-density oligonucleotide array study for parallel detection of harmful algal species using hybridization of consensus PCR products of LSU rDNA D2 domain
    • Ki J.S., Han M.S. A low-density oligonucleotide array study for parallel detection of harmful algal species using hybridization of consensus PCR products of LSU rDNA D2 domain. Biosens. Bioelectron. 2006, 21:1812-1821.
    • (2006) Biosens. Bioelectron. , vol.21 , pp. 1812-1821
    • Ki, J.S.1    Han, M.S.2
  • 20
    • 0032473890 scopus 로고    scopus 로고
    • LNA (locked nucleic acids): synthesis of the adenine, cytosine, guanine, 5-methylcytosine, thymine and uracil bicyclonucleoside monomers, oligomerisation, and unprecedented nucleic acid recognition
    • Koshkin A.A., Singh S.K., Nielsen P., Rajwanshi V.K., Kumar R., Meldgaard M., Olsen C.E., Wengel J. LNA (locked nucleic acids): synthesis of the adenine, cytosine, guanine, 5-methylcytosine, thymine and uracil bicyclonucleoside monomers, oligomerisation, and unprecedented nucleic acid recognition. Tetrahedon 1998, 54:3607-3630.
    • (1998) Tetrahedon , vol.54 , pp. 3607-3630
    • Koshkin, A.A.1    Singh, S.K.2    Nielsen, P.3    Rajwanshi, V.K.4    Kumar, R.5    Meldgaard, M.6    Olsen, C.E.7    Wengel, J.8
  • 21
    • 0024241467 scopus 로고
    • The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions
    • Medlin L., Elwood H.J., Stickel S., Sogin M.L. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 1988, 71:491-499.
    • (1988) Gene , vol.71 , pp. 491-499
    • Medlin, L.1    Elwood, H.J.2    Stickel, S.3    Sogin, M.L.4
  • 22
    • 29444452486 scopus 로고    scopus 로고
    • Picoeukaryotic plankton diversity at the Helgoland time series site as assessed by three molecular methods
    • Medlin L.K., Metfies K., Mehl H., Wiltshire K., Valentin K. Picoeukaryotic plankton diversity at the Helgoland time series site as assessed by three molecular methods. Microb. Ecol. 2006, 52:53-71.
    • (2006) Microb. Ecol. , vol.52 , pp. 53-71
    • Medlin, L.K.1    Metfies, K.2    Mehl, H.3    Wiltshire, K.4    Valentin, K.5
  • 23
    • 35848953188 scopus 로고    scopus 로고
    • An optimized protocol for the identification of diatoms, flagellated algae and pathogenic protozoa with phylochips
    • Metfies K., Berzano M., Mayer C., Roosken P., Gualerzi C., Medlin L.K., Muyzer G. An optimized protocol for the identification of diatoms, flagellated algae and pathogenic protozoa with phylochips. Mol. Ecol. Notes 2007, 7:925-936.
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 925-936
    • Metfies, K.1    Berzano, M.2    Mayer, C.3    Roosken, P.4    Gualerzi, C.5    Medlin, L.K.6    Muyzer, G.7
  • 24
    • 43049100355 scopus 로고    scopus 로고
    • Feasibility of transferring fluorescent in situ hybridization probes to an 18S rRNA gene phylochip and mapping of signal intensities
    • Metfies K., Medlin L.K. Feasibility of transferring fluorescent in situ hybridization probes to an 18S rRNA gene phylochip and mapping of signal intensities. Appl. Environ. Microbiol. 2008, 74:2814-2821.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 2814-2821
    • Metfies, K.1    Medlin, L.K.2
  • 25
    • 34249783438 scopus 로고    scopus 로고
    • Yessotoxins profile in strains of Protoceratium reticulatum from Spain and USA
    • Paz B., Riobo P., Ramilo I., Franco J.M. Yessotoxins profile in strains of Protoceratium reticulatum from Spain and USA. Toxicon 2007, 50:1-17.
    • (2007) Toxicon , vol.50 , pp. 1-17
    • Paz, B.1    Riobo, P.2    Ramilo, I.3    Franco, J.M.4
  • 26
    • 45849114042 scopus 로고    scopus 로고
    • Phylogenetic relationships among the Mediterranean Alexandrium (Dinophyceae) species based on sequences of 5.8S gene and Internal Transcript Spacers of the rRNA operon
    • Penna A., Fraga S., Masó M., Giacobbe M.G., Bravo I., Garcés E., Vila M., Bertozzini E., Andreoni F., Lugliè A., Vernesi C. Phylogenetic relationships among the Mediterranean Alexandrium (Dinophyceae) species based on sequences of 5.8S gene and Internal Transcript Spacers of the rRNA operon. Eur. J. Phycol. 2008, 43:163-178.
    • (2008) Eur. J. Phycol. , vol.43 , pp. 163-178
    • Penna, A.1    Fraga, S.2    Masó, M.3    Giacobbe, M.G.4    Bravo, I.5    Garcés, E.6    Vila, M.7    Bertozzini, E.8    Andreoni, F.9    Lugliè, A.10    Vernesi, C.11
  • 27
    • 33749121617 scopus 로고    scopus 로고
    • Potentially harmful microalgal distribution in an area of the NW Adriatic coastline: sampling procedure and correlations with environmental factors
    • Penna A., Ingarao C., Ercolessi M., Rocchi M., Penna N. Potentially harmful microalgal distribution in an area of the NW Adriatic coastline: sampling procedure and correlations with environmental factors. Estuar. Coast. Shelf Sci. 2006, 70:307-316.
    • (2006) Estuar. Coast. Shelf Sci. , vol.70 , pp. 307-316
    • Penna, A.1    Ingarao, C.2    Ercolessi, M.3    Rocchi, M.4    Penna, N.5
  • 29
    • 77953121795 scopus 로고    scopus 로고
    • Comparing microarrays and next-generation sequencing technologies for microbial ecology research
    • Roh S.W., Abell G.C., Kim K.H., Nam Y.D., Bae J.W. Comparing microarrays and next-generation sequencing technologies for microbial ecology research. Trends Biotechnol. 2010, 28:291-299.
    • (2010) Trends Biotechnol. , vol.28 , pp. 291-299
    • Roh, S.W.1    Abell, G.C.2    Kim, K.H.3    Nam, Y.D.4    Bae, J.W.5
  • 30
    • 0038239283 scopus 로고    scopus 로고
    • OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach
    • Rouillard J.M., Zuker M., Gulari E. OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach. Nucleic Acids Res. 2003, 31:3057-3062.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3057-3062
    • Rouillard, J.M.1    Zuker, M.2    Gulari, E.3
  • 31
    • 57649244971 scopus 로고    scopus 로고
    • Multiple simultaneous detection of Harmful Algal Blooms (HABs) through a high throughput bead array technology, with potential use in phytoplankton community analysis
    • Scorzetti G., Brand L.E., Hitchcock G.L., Rein K.S., Sinigalliano C.D., Fell J.W. Multiple simultaneous detection of Harmful Algal Blooms (HABs) through a high throughput bead array technology, with potential use in phytoplankton community analysis. Harmful Algae 2009, 8:196-211.
    • (2009) Harmful Algae , vol.8 , pp. 196-211
    • Scorzetti, G.1    Brand, L.E.2    Hitchcock, G.L.3    Rein, K.S.4    Sinigalliano, C.D.5    Fell, J.W.6
  • 32
    • 0000954446 scopus 로고
    • Neue wege in der quantitativen erfassung des planktons
    • Utermöhl N. Neue wege in der quantitativen erfassung des planktons. Verh. Int. Ver. Theor. Angew. Limnol. 1931, 5:567-596.
    • (1931) Verh. Int. Ver. Theor. Angew. Limnol. , vol.5 , pp. 567-596
    • Utermöhl, N.1
  • 33
    • 1942440384 scopus 로고    scopus 로고
    • Carbamoylating chemoresistance induced by cobalt pretreatment in C6 glioma cells: putative roles of hypoxia-inducible factor-1
    • Yang D.I., Chen S.D., Yang Y.T., Ju T.C., Xu J.M., Hsu C.Y. Carbamoylating chemoresistance induced by cobalt pretreatment in C6 glioma cells: putative roles of hypoxia-inducible factor-1. Br. J. Pharmacol. 2004, 141:988-996.
    • (2004) Br. J. Pharmacol. , vol.141 , pp. 988-996
    • Yang, D.I.1    Chen, S.D.2    Yang, Y.T.3    Ju, T.C.4    Xu, J.M.5    Hsu, C.Y.6
  • 34
    • 0037772204 scopus 로고    scopus 로고
    • Microarrays for bacterial detection and microbial community analysis
    • Zhou J. Microarrays for bacterial detection and microbial community analysis. Curr. Opin. Microbiol. 2003, 6:288-294.
    • (2003) Curr. Opin. Microbiol. , vol.6 , pp. 288-294
    • Zhou, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.