메뉴 건너뛰기




Volumn 7, Issue 6, 2007, Pages 925-936

An optimized protocol for the identification of diatoms, flagellated algae and pathogenic protozoa with phylochips

Author keywords

Diatoms; Flagellated algae; Molecular probes; Optimized protocol; Phylochip

Indexed keywords

ALGAE; BACILLARIOPHYTA; PROTOZOA;

EID: 35848953188     PISSN: 14718278     EISSN: 14718286     Source Type: Journal    
DOI: 10.1111/j.1471-8286.2007.01799.x     Document Type: Article
Times cited : (25)

References (26)
  • 3
    • 27544490635 scopus 로고    scopus 로고
    • Ribosomal DNA sequence variation among sympatric strains of the Cyclotella meneghiniana complex (Bacillariophyceae) reveals cryptic diversity
    • Beszteri B, Ace E, Medlin LK (2005) Ribosomal DNA sequence variation among sympatric strains of the Cyclotella meneghiniana complex (Bacillariophyceae) reveals cryptic diversity. Protist 156, 317 333.
    • (2005) Protist , vol.156 , pp. 317-333
    • Beszteri, B.1    Ace, E.2    Medlin, L.K.3
  • 4
    • 33747335397 scopus 로고    scopus 로고
    • Phylogeny of 16S rRNA, ribulose 1,5-bisphosphate carboxylase/oxygenase, and adenosine 5′-phosphosulfate reductase genes from gamma- and alphaproteobacterial symbionts in gutless marine worms (Oligochaeta) from Bermuda and the Bahamas
    • Blazejak A, Kuever J, Erseus C, Amann R, Dubilier N (2006) Phylogeny of 16S rRNA, ribulose 1,5-bisphosphate carboxylase/oxygenase, and adenosine 5′-phosphosulfate reductase genes from gamma- and alphaproteobacterial symbionts in gutless marine worms (Oligochaeta) from Bermuda and the Bahamas. Applied and Environmental Microbiology, 72, 5527 5536.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 5527-5536
    • Blazejak, A.1    Kuever, J.2    Erseus, C.3    Amann, R.4    Dubilier, N.5
  • 5
    • 19844379463 scopus 로고    scopus 로고
    • Challenges and opportunities for pathogen detection using DNA microarrays
    • Call DR (2005) Challenges and opportunities for pathogen detection using DNA microarrays. Critical Reviews in Microbiology, 31, 91 99.
    • (2005) Critical Reviews in Microbiology , vol.31 , pp. 91-99
    • Call, D.R.1
  • 6
    • 3042855581 scopus 로고    scopus 로고
    • Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression
    • Chou CC, Chen CH, Lee TT, Peck K (2004) Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression. Nucleic Acids Research 32, e99.
    • (2004) Nucleic Acids Research , vol.32
    • Chou, C.C.1    Chen, C.H.2    Lee, T.T.3    Peck, K.4
  • 7
    • 28544438480 scopus 로고    scopus 로고
    • Present and future of rapid and/or high-throughput methods for nucleic acid testing
    • Csako G (2006) Present and future of rapid and/or high-throughput methods for nucleic acid testing. Clinica Chimica Acta, 363, 6 31.
    • (2006) Clinica Chimica Acta , vol.363 , pp. 6-31
    • Csako, G.1
  • 8
    • 0020793569 scopus 로고
    • A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity
    • Feinberg AP, Vogelstein B (1983) A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Analytical Biochemistry, 132, 6 13.
    • (1983) Analytical Biochemistry , vol.132 , pp. 6-13
    • Feinberg, A.P.1    Vogelstein, B.2
  • 11
    • 0037737999 scopus 로고    scopus 로고
    • Discrimination of the toxigenic dinoflagellates Alexandrium tamarense and A. ostenfeldii in co-occurring natural populations from Scottish coastal waters
    • John U, Cembella A, Hummert C, Elbrächter M, Groben R, Medlin LK (2003) Discrimination of the toxigenic dinoflagellates Alexandrium tamarense and A. ostenfeldii in co-occurring natural populations from Scottish coastal waters. European Journal of Phycology, 38, 25 40.
    • (2003) European Journal of Phycology , vol.38 , pp. 25-40
    • John, U.1    Cembella, A.2    Hummert, C.3    Elbrächter, M.4    Groben, R.5    Medlin, L.K.6
  • 13
    • 1842535013 scopus 로고    scopus 로고
    • Designing better probes: Effect of probe size, mismatching position and number on hybridisation in DNA oligonucleotide microarrays
    • Letowski J, Brousseau R, Masson L (2004) Designing better probes: effect of probe size, mismatching position and number on hybridisation in DNA oligonucleotide microarrays. Journal of Microbiological Methods, 57, 269 278.
    • (2004) Journal of Microbiological Methods , vol.57 , pp. 269-278
    • Letowski, J.1    Brousseau, R.2    Masson, L.3
  • 15
    • 0034659898 scopus 로고    scopus 로고
    • Genomics, gene expression and DNA arrays
    • Lockhart DJ, Winzeler EA (2000) Genomics, gene expression and DNA arrays. Nature, 405, 827 836.
    • (2000) Nature , vol.405 , pp. 827-836
    • Lockhart, D.J.1    Winzeler, E.A.2
  • 16
    • 0036795787 scopus 로고    scopus 로고
    • Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment
    • Loy A, Lehner A, Lee N et al 2002) Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Applied and Environmental Microbiology, 68, 5064 5081.
    • (2002) Applied and Environmental Microbiology , vol.68 , pp. 5064-5081
    • Loy, A.1    Lehner, A.2    Lee, N.3    Al, E.4
  • 18
    • 0024241467 scopus 로고
    • The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions
    • Medlin L, Elwood HJ, Stickel S, Sogin ML (1988) The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene, 71, 491 499.
    • (1988) Gene , vol.71 , pp. 491-499
    • Medlin, L.1    Elwood, H.J.2    Stickel, S.3    Sogin, M.L.4
  • 19
    • 29444452486 scopus 로고    scopus 로고
    • Picoeukaryotic plankton diversity at the Helgoland time series site as assessed by three molecular methods
    • Medlin LK, Metfies K, Mehl H, Wiltshire K, Valentin K (2006). Picoeukaryotic plankton diversity at the Helgoland time series site as assessed by three molecular methods. Microbial Ecology, 52, 53 71.
    • (2006) Microbial Ecology , vol.52 , pp. 53-71
    • Medlin, L.K.1    Metfies, K.2    Mehl, H.3    Wiltshire, K.4    Valentin, K.5
  • 20
    • 19944382034 scopus 로고    scopus 로고
    • DNA microchips for phytoplankton: The fluorescent wave of the future
    • Metfies K, Medlin L (2004) DNA microchips for phytoplankton: the fluorescent wave of the future. Nova Hedwigia, 79, 321 327.
    • (2004) Nova Hedwigia , vol.79 , pp. 321-327
    • Metfies, K.1    Medlin, L.2
  • 21
    • 33747120882 scopus 로고    scopus 로고
    • Meeting report: Molecular ecology workshop. Detection of microbial biodiversity in environmental samples, Camerino, Italy, September 19-21, 2005
    • Metfies K, Berzano M, Gualerzi C, Muyzer G, Medlin LK (2006) Meeting report: molecular ecology workshop. Detection of microbial biodiversity in environmental samples, Camerino, Italy, September 19-21, 2005. Protist, 157, 247 250.
    • (2006) Protist , vol.157 , pp. 247-250
    • Metfies, K.1    Berzano, M.2    Gualerzi, C.3    Muyzer, G.4    Medlin, L.K.5
  • 22
    • 0037335692 scopus 로고    scopus 로고
    • Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes
    • Peplies J, Glöckner FO, Amann R (2003) Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes. Applied and Environmental Microbiology, 69, 1397 1407.
    • (2003) Applied and Environmental Microbiology , vol.69 , pp. 1397-1407
    • Peplies, J.1    Glöckner, F.O.2    Amann, R.3
  • 23
    • 28244492964 scopus 로고    scopus 로고
    • Microarray expression profiling resources for plant genomics
    • Rensink WA, Buell CR (2005) Microarray expression profiling resources for plant genomics. Trends in Plant Sciences, 10, 603 609.
    • (2005) Trends in Plant Sciences , vol.10 , pp. 603-609
    • Rensink, W.A.1    Buell, C.R.2
  • 24
    • 0033956590 scopus 로고    scopus 로고
    • Oligonucleotide probes for the identification of three algal groups by dot blot and fluorescent whole-cell hybridisation
    • Simon N, Campbell L, Ornolfsdottir E et al 2000) Oligonucleotide probes for the identification of three algal groups by dot blot and fluorescent whole-cell hybridisation. Journal of Eukaryotic Microbiology, 47, 76 84.
    • (2000) Journal of Eukaryotic Microbiology , vol.47 , pp. 76-84
    • Simon, N.1    Campbell, L.2    Ornolfsdottir, E.3    Al, E.4
  • 25
    • 22244458625 scopus 로고    scopus 로고
    • Applications of DNA microarrays in biology
    • Stoughton RB (2005) Applications of DNA microarrays in biology. Annual Review of Biochemistry, 74, 53 82.
    • (2005) Annual Review of Biochemistry , vol.74 , pp. 53-82
    • Stoughton, R.B.1
  • 26
    • 0036843471 scopus 로고    scopus 로고
    • An open source oligomicroarray standard for human and mouse
    • Wright MA, Church GM (2002) An open source oligomicroarray standard for human and mouse. Nature Biotechnology, 20, 1082 1083.
    • (2002) Nature Biotechnology , vol.20 , pp. 1082-1083
    • Wright, M.A.1    Church, G.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.