The rate of fitness-valley crossing in sexual populations

Genetics

Volumn 186, Issue 4, 2010, Pages 1389-1410

  Weissman, Daniel B ^a   Feldman, Marcus W ^b   Fisher, Daniel S ^b  

^a INSTITUTE OF SCIENCE AND TECHNOLOGY AUSTRIA   (Austria)

^b STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ASEXUAL REPRODUCTION; BIOLOGICAL TRAIT; CROSSING OVER; EVOLUTIONARY ADAPTATION; GENE FREQUENCY; GENE LOCUS; GENE MUTATION; GENETIC RECOMBINATION; GENOTYPE; HUMAN; MUTANT; POPULATION GENETICS; PRIORITY JOURNAL;

ADAPTATION, PHYSIOLOGICAL; EPISTASIS, GENETIC; GENETIC FITNESS; GENETIC LOCI; GENETICS, POPULATION; KINETICS; MODELS, GENETIC; MUTATION; RECOMBINATION, GENETIC; SEXUAL BEHAVIOR;

EID: 79251584034     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.110.123240     Document Type: Article

References (47)

1. ANDOLFATTO, P., and J. D. WALL, 2003 Linkage disequilibrium patterns across a recombination gradient in african Drosophila melanogaster. Genetics 165: 1289-1305.
2. ATHREYA, K. B., and P. E. NEY, 1972 Branching Processes, Ed. 1. Springer-Verlag, New York.
3. BARTON, N. H., 1995 Linkage and the limits to natural selection. Genetics 140: 821-841.
4. BARTON, N. H., and S. ROUHANI, 1987 The frequency of shifts between alternative equilibria. J. Theor. Biol. 125: 397-418.
5. BLOUNT, Z. D., C. Z. BORLAND and R. E. LENSKI, 2008 Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli. Proc. Natl. Acad. Sci. USA 105: 7899-7906.
6. BRIDGHAM, J. T., S. M. CARROLL and J. W. THORNTON, 2006 Evolution of hormone-receptor complexity by molecular exploitation. Science 312: 97-101.
7. CARTER, A. J. R., and G. P. WAGNER, 2002 Evolution of functionally conserved enhancers can be accelerated in large populations: a population-genetic model. Proc. R. Soc. B 269: 953-960.
8. CAVALLI-SFORZA, L., and A. W. F. EDWARDS, 1967 Phylogenetic analysis: models and estimation procedures. Am. J. Hum. Genet. 19: 233-257.
9. CHRISTIANSEN, F. B., S. P. OTTO, A. BERGMAN and M. W. FELDMAN, 1998 Waiting with and without recombination: the time to production of a double mutant. Theor. Popul. Biol. 53: 199-215.
10. CROW, J. F., and M. KIMURA, 1965 Evolution in sexual and asexual populations. Am. Nat. 99: 439-450.
11. DE VISSER, J. A. G. M., S.-C. PARK and J. KRUG, 2009 Exploring the effect of sex on empirical fitness landscapes. Am. Nat. 174: S15-S30.
12. DURRETT, R., and D. SCHMIDT, 2008 Waiting for two mutations: with applications to regulatory sequence evolution and the limits of Darwinian evolution. Genetics 180: 1501-1509.
13. ESHEL, I., and M. W. FELDMAN, 1970 On the evolutionary effect of recombination. Theor. Popul. Biol. 1: 88-100.
14. EWENS, W. J., 2004 Mathematical Population Genetics, Ed. 2. Springer-Verlag, New York.
15. FISHER, D. S., 2007 Evolutionary dynamics, pp. 395-446 in Complex Systems (Lecture Notes of the Les Houches Summer School, Vol. LXXXV), edited by J. P. Bouchaud, M. Mezard and J. Dalibard. Springer-Verlag, Amsterdam.
16. FRANK, S. A., 2007 Dynamics of Cancer: Incidence, Inheritance, and Evolution. Princeton University Press, Princeton, NJ.
17. GOH, C.-S., A. A. BOGAN, M. JOACHIMIAK, D. WALTHER and F. E. COHEN, 2000 Co-evolution of proteins with their interaction partners. J. Mol. Biol. 299: 283-293.
18. HADANY, L., 2003 Adaptive peak shifts in a heterogenous environment. Theor. Popul. Biol. 63: 41-51.
19. HALDANE, J. B. S., 1931 A mathematical theory of natural selection, part VIII: metastable populations. Math. Proc. Camb. Philos. Soc. 27: 137-142.
20. HILLIKER, A. J., G. HARAUZ, A. G. REAUME, M. GRAY, S. H. CLARK et al., 1994 Meiotic gene conversion tract length distribution within the rosy locus of Drosophila melanogaster. Genetics 137: 1019-1026.
21. IWASA, Y., F. MICHOR and M. A. NOWAK, 2004 Stochastic tunnels in evolutionary dynamics. Genetics 166: 1571-1579.
22. JAIN, K., 2009 Time to fixation in the presence of recombination. Theor. Popul. Biol. 77: 23-31.
23. KARLIN, S., and J. MCGREGOR, 1971 On mutation selection balance for two-locus haploid and diploid populations. Theor. Popul. Biol. 2: 60-70.
24. KENDALL, D. G., 1948 On the generalized "birth-and-death" process. Ann. Math. Stat. 19: 1-15.
25. KIM, Y., 2007 Rate of adaptive peak shifts with partial genetic robustness. Evolution 61: 1847-1856. (Pubitemid 47220945)
26. KIMURA, M., 1962 On the probability of fixation of mutant genes in a population. Genetics 47: 713-719.
27. KIMURA, M., 1964 Diffusion models in population genetics. J. Appl. Probab. 1: 177-232.
28. KIMURA, M., 1985 The role of compensatory neutral mutations in molecular evolution. J. Genet. 64: 7-19.
29. KOMAROVA, N. L., 2006 Spatial stochastic models for cancer initiation and progression. Bull. Math. Biol. 68: 1573-1599.
30. KOMAROVA, N. L., A. Sengupta and M. A. Nowak, 2003 Mutation-selection networks of cancer initiation: tumor suppressor genes and chromosomal instability. J. Theor. Biol. 223: 433-450.
31. LEVIN, B. R., V. PERROT and N. WALKER, 2000 Compensatory mutations, antibiotic resistance and the population genetics of adaptive evolution in bacteria. Genetics 154: 985-997.
32. LYNCH, M., 2010 Scaling expectations for the time to establishment of complex adaptations. Proc. Natl. Acad. Sci. USA 107: 16577-16582.
33. LYNCH, M., and A. ABEGG, 2010 The rate of establishment of complex adaptations. Mol. Biol. Evol. 27: 1404-1414.
34. MASEL, J., 2006 Cryptic genetic variation is enriched for potential adaptations. Genetics 172: 1985-1991.
35. MICHALAKIS, Y., and M. SLATKIN, 1996 Interaction of selection and recombination in the fixation of negative-epistatic genes. Genet. Res. 67: 257-269.
36. NEHER, R. A., and B. I. SHRAIMAN, 2009 Competition between recombination and epistasis can cause a transition from allele to genotype selection. Proc. Natl. Acad. Sci. USA 106: 6866-6871.
37. NOWAK, M. A., 2006 Evolutionary Dynamics: Exploring the Equations of Life, Ed. 1. Belknap Press, Cambridge, MA.
38. PISKOL, R., and W. STEPHAN, 2008 Analyzing the evolution of RNA secondary structures in vertebrate introns using Kimura's model of compensatory fitness interactions. Mol. Biol. Evol. 25: 2483-2492.
39. SCHWEINSBERG, J., 2008 The waiting time for m mutations. Electron. J. Probab. 13: 1442-1478.
40. STEPHAN, W., 1996 The rate of compensatory evolution. Genetics 144: 419-426.
41. STEPHAN, W., and D. A. KIRBY, 1993 RNA folding in Drosophila shows a distance effect for compensatory fitness interactions. Genetics 135: 97-103.
42. SUZUKI, H., 1997 The optimum recombination rate that realizes the fastest evolution of a novel functional combination of many genes. Theor. Popul. Biol. 51: 185-200.
43. TAKAHASI, K. R., and F. TAJIMA, 2005 Evolution of coadaptation in a two-locus epistatic system. Evolution 59: 2324-2332.
44. TAKAHATA, N., 1982 Sexual recombination under the joint effects of mutation, selection, and random sampling drift. Theor. Popul. Biol. 22: 258-277.
45. WEINREICH, D. M., and L. CHAO, 2005 Rapid evolutionary escape by large populations from local fitness peaks is likely in nature. Evolution 59: 1175-1182.
46. WEISSMAN, D. B., M. M. DESAI, D. S. FISHER and M. W. FELDMAN, 2009 The rate at which asexual populations cross fitness valleys. Theor. Popul. Biol. 75: 286-300.
47. WODARZ, D., and N. L. KOMAROVA, 2005 Computational Biology of Cancer: Lecture Notes and Mathematical Modeling, Ed. 1. World Scientific, Hackensack, NJ.