How the local geometry of the cu-binding site determines the thermal stability of blue copper proteins

Chemistry and Biology

Volumn 18, Issue 1, 2011, Pages 25-31

  Chaboy, Jesús ^a   Díaz Moreno, Sofía ^b   Diaz Moreno I ^c   De La Rosa, Miguel A ^c   Díaz Quintana, Antonio ^c  

^a UNIVERSITY OF ZARAGOZA   (Spain)

^b DIAMOND LIGHT SOURCE LTD   (United Kingdom)

^c UNIVERSITY OF SEVILLE   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CYANOBACTERIA; PHORMIDIUM; SYNECHOCYSTIS;

EID: 79251571780     PISSN: 10745521     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chembiol.2010.12.006     Document Type: Article

References (49)

1. M.W.W. Adams, and R.M. Kelly Enzymes from microorganisms in extreme environments Chem. Eng. News 73 1995 32 42
2. L.A. Alcaraz, and A. Donaire Unfolding process of rusticyanin: evidence of protein aggregation Eur. J. Biochem. 271 2004 4284 4292
3. L.A. Alcaraz, and A. Donaire Rapid binding of copper(I) to folded aporusticyanin FEBS Lett. 579 2005 5223 5226
4. C. Arcangeli, A.R. Bizzarri, and S. Cannistraro Molecular dynamics simulation and essential dynamics study of mutated plastocyanin: structural, dynamical and functional effects of a disulfide bridge insertion at the protein surface Biophys. Chem. 92 2001 183 189
5. C.S. Bond, D.S. Bendall, H.C. Freeman, J.M. Guss, C.J. Howe, M.J. Wagner, and M.C.J. Wilce The structure of plastocyanin from the cyanobacterium Phormidium laminosum Acta Crystallogr. D Biol. Crystallogr. 55 1999 414 421
6. G.W. Canters, U. Kolczak, F. Armstrong, L.J.C. Jeuken, R. Camba, and M. Sola The effect of pH and ligand exchange on the redox properties of blue copper proteins Faraday Discuss. 116 2000 205 220
7. J. Chaboy Relationship between the structural distortion and the Mn electronic state in La1-xCaxMnO3: a Mn K -edge XANES study J. Synchrotron Radiat. 16 2009 533 544
8. J. Chaboy, and S. Quartieri X-ray absorption at the Ca K-edge in natural-garnet solid solutions: a full-multiple-scattering investigation Phys. Rev. B Condens. Matter 52 1995 6349 6357
9. J. Chaboy, A. Muñoz-Páez, F. Carrera, P. Merkling, and E. Sánchez-Marcos Ab initio x-ray absorption study of copper K-edge XANES spectra in Cu(II) compounds Phys. Rev. B 71 2005 134208
10. 10L electronic configurations in the copper K-edge XANES spectra of Cu(II) compounds J. Synchrotron Radiat. 13 2006 471 476
11. 2+: can the Jahn-Teller effect be detected in liquid solution? J. Chem. Phys. 124 2006 64509
12. 3MC (M = Sn, Zn and Ga) compounds J. Phys. Condens. Matter 19 2007 216214
13. J. Chaboy, N. Nakajima, and Y. Tezuka Ab-initio x-ray absorption near-edge structure study of Ti K-edge in rutile J. Phys. Condens. Matter 19 2007 266206
14. P. Comba Coordination compounds in the entatic state Coord. Chem. Rev. 200-202 2000 217 245
15. M.J. Feio, J.A. Navarro, M.S. Teixeira, D. Harrison, B.G. Karlsson, and M.A. De la Rosa A thermal unfolding study of plastocyanin from the thermophilic cyanobacterium Phormidium laminosum Biochemistry 43 2004 14784 14791
16. M.J. Feio, J.A. Navarro, A. Díaz-Quintana, J.A. Navarro, and M.A. De la Rosa Thermal unfolding of plastocyanin from the mesophilic cyanobacterium Synechocystis sp PCC 6803and comparison with its thermophilic counterpart from Phormidium laminosum Biochemistry 45 2006 4900 4906
17. J. Gough, and C. Chotia The linked conservation of structure and function in a family of high diversity: The monomeric cupredoxins Structure 12 2004 917 925
18. J.A. Guckert, M.D. Lowery, and E.I. Solomon Electronic structure of the reduced blue copper active site: contributions to reduction potentials and geometry J. Am. Chem. Soc. 117 1995 2817 2844
19. M.D. Harrison, S. Yanagisawa, and C. Dennison Investigating the cause of the alkaline transition of phytocyanins Biochemistry 44 2005 3056 3064
20. 2MnM (M = Al, Sn, In) Heusler alloys Phys. Rev. B Condens. Matter 76 2007 104411
21. D. Ivnitski, B. Branch, P. Atanassov, and C. Apblett Glucose oxidase anode for biofuel cell based on direct electron transfer Electrochem. Commun. 8 2006 1204 1210
22. L.H. Jones, A.M. Liu, and V.L. Davidson An engineered Cu-A amicyanin capable of intermolecular electron transfer reactions J. Biol. Chem. 278 2003 47269 47274
23. D.J. Kosman Multicopper oxidases: a workshop on copper coordination chemistry, electron transfer, and metallophysiology J. Biol. Inorg. Chem. 15 2010 15 28
24. α X-ray lines and several KLL auger lines J. Phys. Chem. Ref. Data 8 1979 329 338
25. L.B. LaCroix, S.E. Shadle, Y. Wang, B.A. Averill, B. Hedman, K.O. Hodgson, and E.I. Solomon Electronic structure of the perturbed blue copper site in nitrite reductase: spectroscopic properties, bonding, and implications for the entatic/rack state J. Am. Chem. Soc. 118 1996 7755 7768
26. K.M. Lancaster, G.S. DeBeer, K. Yokohama, J.H. Richards, and H.B. Gray Type-zero copper proteins Nat. Chem. 1 2009 711 715
27. M. Landau, I. Mayrose, Y. Rosenberg, F. Glaser, E. Martz, T. Pupko, and N. Ben-Tal ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures Nucleic Acids Res. 33 2005 W299 W302
28. J. Leckner, P. Wittung, N. Bonander, B.G. Karlsson, and B.G. Malmstrom The effect of redox state on the folding free-energy of azurin J. Biol. Inorg. Chem. 2 1997 368 371
29. M. Lehmann, L. Pasamontes, S.F. Lassen, and M. Wyss The consensus concept for thermostability engineering of proteins Biochim. Biophys. Acta 1543 2000 408 415
30. N.M. Marshall, D.K. Garner, T.D. Wilson, Y.G. Gao, H. Robinson, M.J. Nilges, and Y. Lu Rationally tuning the reduction potential of a single cupredoxin beyond the natural range Nature 462 2009 113 116
31. F.J. Muñoz-López, E. Frutos-Beltrán, S. Díaz-Moreno, I. Díaz-Moreno, G. Subías, M.A. De la Rosa, and A. Díaz-Quintana Modulation of copper site properties by remote residues determines the stability of plastocyanins FEBS Lett. 584 2010 2346 2350
32. F.J. Muñoz-López, S. Raugei, M.A. De la Rosa, A. Díaz-Quintana, and P. Carloni Changes in non-core regions stabilise plastocyanin from the thermophilic cyanobacterium Phormidium laminosum J. Biol. Inorg. Chem. 15 2010 329 338
33. Y. Miura, S. Tsujimura, S. Kurose, Y. Kamitaka, K. Kataoka, T. Sakurai, and K. Kano Direct electrochemistry of CueO and its mutants at residues to and near a type I Cu for oxygen-reducing biocathode Fuel Cells 9 2009 70 78
34. K. Nakamura, and N. Go Function and molecular evolution of multicopper blue proteins Cell. Mol. Life Sci. 62 2005 2050 2066
35. M. Pavelka, and J.V. Burda Computational study of redox active centres of blue copper proteins: a computational DFT study Mol. Phys. 106 2008 2733 2748
36. A. Persidis Extremophiles Nat. Biotechnol. 16 1998 593 594
37. E.F. Pettersen, T.D. Goddard, C.C. Huang, G.S. Couch, D.M. Greenblatt, E.C. Meng, and T.E. Ferrin UCSF Chimera - a visualization system for exploratory research and analysis J. Comput. Chem. 25 2004 1605 1612
38. I. Pozdnyakova, and P. Wittung-Stafshede Biological relevance of metal binding before protein folding J. Am. Chem. Soc. 123 2001 10135 10136
39. I. Pozdnyakova, J. Guidry, and P. Wittung-Stafshede Probing copper ligands in denatured Pseudomonas aeruginosa azurin: Unfolding His117Gly and His46Gly mutants J. Biol. Inorg. Chem. 6 2001 182 188
40. D.W. Randall, D.R. Gamelin, L.B. LaCroix, and E.I. Solomon Electronic structure contributions to electron transfer in blue Cu and Cu(A) J. Biol. Inorg. Chem. 5 2000 16 19
41. R. Remenyi, L.J.C. Jeuken, P. Comba, and G.W. Canters An amicyanin C-terminal loop mutant where the active-site histidine donor cannot be protonated J. Biol. Inorg. Chem. 6 2001 23 26
42. A. Romero, B. De la Cerda, P.F. Varela, J.A. Navarro, M. Hervás, and M.A. De la Rosa The 2.15 A crystal structure of a triple mutant plastocyanin from the cyanobacterium Synechocystis sp. PCC 6803 J. Mol. Biol. 275 1998 327 336
43. A. Sandberg, D.J. Harrison, and B.G. Karlsson Thermal denaturation of spinach plastocyanin: Effect of copper site oxidation state and molecular oxygen Biochemistry 42 2003 10301 10310
44. K. Sato, and C. Dennison Effect of histidine 6 protonation on the active site structure and electron-transfer capabilities of pseudoazurin from Achromobacter cycloclastes Biochemistry 41 2002 120 130
45. E.I. Solomon Spectroscopic methods in bioinorganic chemistry: blue to green to red copper sites Inorg. Chem. 45 2006 8012 8025
46. E.I. Solomon, S.I. Gorelsky, and A. Dey Metal-thiolate bonds in bioinorganic chemistry J. Comput. Chem. 27 2006 1415 1428
47. E.I. Solomon, R.K. Szilagyi, S.D. George, and L. Basumallick Electronic structures of metal sites in proteins and models: contributions to function in blue copper proteins Chem. Rev. 104 2004 419 458
48. A. Szilagyi, and P. Zavodszky Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey Structure 8 2000 493 504
49. S. Tsujimura, Y. Miura, and K. Kano CueO-immobilized porous carbon electrode exhibiting improved performance of electrochemical reduction of dioxygen to water Electrochim. Acta 53 2008 5716 5720