Travelling in time with networks: Revealing present day hybridization versus ancestral polymorphism between two species of brown algae, Fucus vesiculosus and F. spiralis

BMC Evolutionary Biology

Volumn 11, Issue 1, 2011, Pages

  Moalic, Yann ^a   Arnaud Haond, Sophie ^a   Perrin, Cécile ^b   Pearson, Gareth A ^b   Serrao, Ester A ^b  

^a IFREMER   (France)

^b UNIVERSITY OF ALGARVE   (Portugal)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; BAYESIAN ANALYSIS; BROWN ALGA; DIVERGENCE; EVOLUTIONARY BIOLOGY; FACILITATION; GENETIC MARKER; HYBRIDIZATION; NETWORK ANALYSIS; POLYMORPHISM; SPECIATION (BIOLOGY); SYMPATRY;

ATLANTIC OCEAN; ATLANTIC OCEAN (NORTH); IBERIAN PENINSULA; NORTH AFRICA; PACIFIC NORTHWEST;

FUCUS; FUCUS SPIRALIS; FUCUS VESICULOSUS; PHAEOPHYCEAE;

MICROSATELLITE DNA;

ARTICLE; FUCUS; GENETIC POLYMORPHISM; GENETICS; GENOTYPE; HYBRIDIZATION; MOLECULAR EVOLUTION;

EVOLUTION, MOLECULAR; FUCUS; GENOTYPE; HYBRIDIZATION, GENETIC; MICROSATELLITE REPEATS; POLYMORPHISM, GENETIC;

EID: 79251567665     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-11-33     Document Type: Article

References (56)

1. Hewitt GM: Hybrid zones-natural laboratories for evolutionary studies. Trends in Ecology & Evolution 1988, 3(7):158-167.
2. Orr MR, Smith TB: Ecology and speciation. Trends in Ecology & Evolution 1998, 13(12):502-506. (Pubitemid 28547330)
3. Schluter D: Ecology and the origin of species. Trends in Ecology & Evolution 2001, 16(7):372-380.
4. Via S: The ecological genetics of speciation. The American Naturalist 2002, 159(Suppl 3):S1-7-S1-7.
5. Odling-Smee FJ, Laland KN, Feldman MW: Niche construction. Princeton University Press; 2003.
6. Albert V, Jonsson B, Bernatchez L: Natural hybrids in Atlantic eels (Anguilla anguilla, A. rostrata): evidence for successful reproduction and fluctuating abundance in space and time. Molecular ecology 2006, 15(7):1903-1916. (Pubitemid 43725674)
7. Barton NH, Hewitt GM: Adaptation, speciation and hybrid zones. Nature 1989, 341(6242):497-503.
8. Jiggins CD, Mallet J: Bimodal hybrid zones and speciation. Trends in Ecology & Evolution 2000, 15(6):250-255. (Pubitemid 30326884)
9. Bierne N, Bonhomme F, David P: Habitat preference and the marinespeciation paradox. Proceedings Biological Sciences/The Royal Society 2003, 270(1522):1399-1406.
10. Ogden R, Thorpe RS: Molecular evidence for ecological speciation in tropical habitats. Proceedings of the National Academy of Sciences of the United States of America 2002, 99(21):13612-13615. (Pubitemid 35215428)
11. Vines TH, Köhler SC, Thiel M, Ghira I, Sands TR, MacCallum CJ, Barton NH, Nürnberger B: The maintenance of reproductive isolation in a mosaic hybrid zone between the fire-bellied toads Bombina bombina and B. variegata. Evolution; International Journal of Organic Evolution 2003, 57(8):1876-1888. (Pubitemid 37096403)
12. Beerli P, Felsenstein J: Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach. Genetics 1999, 152(2):763-773. (Pubitemid 29272726)
13. Chikhi L, Bruford MW, Beaumont MA: Estimation of admixture proportions: a likelihood-based approach using Markov chain Monte Carlo. Genetics 2001, 158(3):1347-1362. (Pubitemid 32667117)
14. Choisy M, Franck P, Cornuet JM: Estimating admixture proportions with microsatellites: comparison of methods based on simulated data. Molecular Ecology 2004, 13(4):955-968. (Pubitemid 38390599)
15. Mousset S, Derome N, Veuille M: A test of neutrality and constant population size based on the mismatch distribution. Mol Biol Evol 2004, 21(4):724-731. (Pubitemid 38452106)
16. Pritchard JK, Stephens M, Donnelly P: Inference of population structure using multilocus genotype data. Genetics 2000, 155(2):945-959. (Pubitemid 30397141)
17. Dyer RJ, Nason JD: Population Graphs: the graph theoretic shape of genetic structure. Mol Ecol 2004, 13(7):1713-1727. (Pubitemid 38847581)
18. Fortuna MA, Albaladejo RG, Fernández L, Aparicio A, Bascompte J: Networks of spatial genetic variation across species. Proceedings of the National Academy of Sciences 2009, 106(45):19044-19049.
19. Rozenfeld AF, Arnaud-Haond S, Hernandez-Garcia E, Eguiluz VM, Matias MA, Serrao E, Duarte CM: Spectrum of genetic diversity and networks of clonal organisms. Journal of the Royal Society, Interface/the Royal Society 2007, 4(17):1093-1102. (Pubitemid 350303866)
20. Rozenfeld AF, Arnaud-Haond S, Hernandez-Garcia E, Eguiluz VM, Serrao EA, Duarte CM: Network analysis identifies weak and strong links in a metapopulation system. Proc Natl Acad Sci USA 2008, 105(48):18824-18829.
21. Griffiths RC, Tavare S: Simulating probability distributions in the coalescent. Theoretical Population Biology 1994, 46(2):131-159.
22. Wilson GA, Rannala B: Bayesian inference of recent migration rates using multilocus genotypes. Genetics 2003, 163(3):1177-1191. (Pubitemid 36417957)
23. Anderson EC, Thompson EA: A model-based method for identifying species hybrids using multilocus genetic data. Genetics 2002, 160(3):1217-1229. (Pubitemid 34263481)
24. Amaral LA, Scala A, Barthelemy M, Stanley HE: Classes of small-world networks. Proceedings of the National Academy of Sciences of the United States of America 2000, 97(21):11149-11152.
25. Strogatz SH: Exploring complex networks. Nature 2001, 410(6825):268-276.
26. Proulx SR, Promislow DEL, Phillips PC: Network thinking in ecology and evolution. Trends Ecol Evol 2005, 20(6):345-353. (Pubitemid 40772082)
27. Barabasi AL, Albert R: Emergence of scaling in random networks. Science (New York, NY 1999, 286(5439):509-512.
28. Arnaud-Haond S, Migliaccio M, Diaz-Almela E, Teixeira S, van de Vliet MS, Alberto F, Procaccini G, Duarte CM, Serrao EA: Vicariance patterns in the Mediterranean Sea: east-west cleavage and low dispersal in the endemic seagrass Posidonia oceanica. J Biogeogr 2007, 34(6):963-976. (Pubitemid 47074539)
29. Billard E, Serrao E, Pearson G, Destombe C, Valero M: Fucus vesiculosus and spiralis species complex: a nested model of local adaptation at the shore level. Marine Ecology-Progress Series 2010, 405:163-174.
30. Zardi GI, Nicastro KR, Canovas F, Costa JF, Serrão EA, Pearson GA: Adaptive traits are maintained on steep selective gradients despite gene flow and hybridization in the intertidal zone. PLoS ONE .
31. Coyer JA, Hoarau G, Pearson GA, Serrao EA, Stam WT, Olsen JL: Convergent adaptation to a marginal habitat by homoploid hybrids and polyploid ecads in the seaweed genus Fucus. Biology Letters 2006, 2(3):405-408. (Pubitemid 44387373)
32. Coyer JA, Hoarau G, Costa JF, Hogerdijk B, Serrão EA, Billard E, Valero M, Pearson GA, Olsen JL: Evolution and diversification within the intertidal brown macroalgae Fucus spiralis/F. vesiculosus species complex in the North Atlantic. Molecular Phylogenetics and Evolution .
33. Wallace AL, Klein AS, Mathieson AC: Determining the affinities of salt marsh fucoids using microsatellite markers: Evidence of hybridization and introgression between two species of Fucus (Phaeophyta) in a Maine estuary. Journal of Phycology 2004, 40(6):1013-1027. (Pubitemid 40025125)
34. Engel CR, Daguin C, Serrao EA: Genetic entities and mating system in hermaphroditic Fucus spiralis and its close dioecious relative F. vesiculosus (Fucaceae, Phaeophyceae). Molecular ecology 2005, 14(7):2033-2046. (Pubitemid 40778267)
35. Billard E, Daguin C, Pearson G, Serrao E, Engel C, Valero M: Genetic isolation between three closely related taxa: Fucus vesiculosus, F. spiralis, and F. ceranoides (Phaophyceae). Journal of Phycology 2005, 41(4):900-905.
36. Wallace AL, Klein AS, Mathieson AC: A reply to Engel et al. Molecular ecology 2006, 15(4):1185-1187.
37. Engel CR, Daguin C, Serrao EA: When is a hybrid a hybrid? A counter-reply to Wallace et al. Molecular ecology 2006, 15(11):3481-3482.
38. Chakraborty R, Jin L: Determination of relatedness between individuals using DNA fingerprinting. Human Biology; an International Record of Research 1993, 65(6):875-895.
39. Goldstein DB, Ruiz Linares A, Cavalli-Sforza LL, Feldman MW: An evaluation of genetic distances for use with microsatellite loci. Genetics 1995, 139(1):463-471.
40. Hewitt GM: Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 2004, 359(1442):183-195.
41. Maggs CA, Castilho R, Foltz D, Henzler C, Jolly MT, Kelly J, Olsen J, Perez KE, Stam W, Vainola R, et al: Evaluating signatures of Glacial Refugia for North Atlantic benthic marine taxa. Ecology 2008, 89(11):S108-S122.
42. Gabrielsen TM, Brochmann C, Rueness J: The Baltic Sea as a model system for studying postglacial colonization and ecological differentiation, exemplified by the red alga Ceramium tenuicorne. Molecular ecology 2002, 11(10):2083-2095.
43. Coyer JA, Peters AF, Stam WT, Olsen JL: Post-ice age recolonization and differentiation of Fucus serratus L. (Phaeophyceae; Fucaceae) populations in Northern Europe. Molecular ecology 2003, 12(7):1817-1829.
44. Wares JP, Gaines SD, Cunningham CW: A comparative study of asymmetric migration events across a marine biogeographic boundary. Evolution 2001, 55(2):295-306. (Pubitemid 32228615)
45. Hoarau G, Coyer JA, Veldsink JH, Stam WT, Olsen JL: Glacial refugia and recolonization pathways in the brown seaweed Fucus serratus. Molecular ecology 2007, 16(17):3606-3616. (Pubitemid 47383103)
46. Neiva J, Pearson GA, Valero M, Serrao EA: Surfing the wave on a borrowed board: range expansion and spread of introgressed organellar genomes in the seaweed Fucus ceranoides L. Molecular ecology 2010, 19(21):4812-4822.
47. Muhlin JF, Brawley SH: Recent versus relic: discerning the genetic signature of Fucus vesiculosus (Heterokontophyta; Phaeophyceae) in the Northwestern Atlantic. Journal of Phycology 2009, 45(4):828-837.
48. Ladah L, Bermudez R, Pearson G, Serrao E: Fertilization success and recruitment of dioecious and hermaphroditic fucoid seaweeds with contrasting distributions near their southern limit. Marine Ecology-Progress Series 2003, 262:173-183.
49. Billard E, Serrao EA, Pearson GA, Engel CR, Destombe C, Valero M: Analysis of sexual phenotype and prezygotic fertility in natural populations of Fucus spiralis, F. vesiculosus (Fucaceae, Phaeophyceae) and their putative hybrids. European Journal of Phycology 2005, 40(4):397-407. (Pubitemid 41759251)
50. Pearson GA, Serrao EA: Revisiting synchronous gamete release by fucoid algae in the intertidal zone: fertilization success and beyond? Integrative and Comparative Biology 2006, 46(5):587-597.
51. Perrin C, Daguin C, Van De Vliet M, Engel CR, Pearson GA, Serrao EA: Implications of mating system for genetic diversity of sister algal species: Fucus spiralis and Fucus vesiculosus (Heterokontophyta, Phaeophyceae). European Journal of Phycology 2007, 42(3):219-230. (Pubitemid 47295344)
52. Goldstein DB, Ruiz Linares A, Cavalli-Sforza LL, Feldman MW: Genetic absolute dating based on microsatellites and the origin of modern humans. Proceedings of the National Academy of Sciences of the United States of America 1995, 92(15):6723-6727.
53. Bowcock AM, Ruiz-Linares A, Tomfohrde J, Minch E, Kidd JR, Cavalli-Sforza LL: High resolution of human evolutionary trees with polymorphic microsatellites. Nature 1994, 368(6470):455-457.
54. Estoup A, Garnery L, Solignac M, Cornuet JM: Microsatellite variation in honey bee (Apis mellifera L.) populations: hierarchical genetic structure and test of the infinite allele and stepwise mutation models. Genetics 1995, 140(2):679-695.
55. Stauffer D, Aharony A: Introduction to percolation theory. Taylor & Francis, London; 1994.
56. Freeman LC: Set of measures of centrality based on betweenness. Sociometry Sociometry 1977, 40(1):35-41.