Identification of Lonicera japonica and its related species using the DNA barcoding method

Planta Medica

Volumn 77, Issue 3, 2011, Pages 301-306

  Sun, Zhiying ^a,b   Gao, Ting ^a   Yao, Hui ^a   Shi, Linchun ^a   Zhu, Yingjie ^a   Chen, Shilin ^a  

^a INSTITUTE OF MEDICINAL PLANT DEVELOPMENT   (China)

^b SHANDONG UNIVERSITY OF TRADITIONAL CHINESE MEDICINE   (China)

Author keywords

Caprifoliaceae; DNA barcoding; Lonicera; Lonicera japonica; molecular identification; psbAtrnH intergenic spacer

Indexed keywords

DNA MARKER; SPACER DNA;

ARTICLE; DNA BARCODING; DRUG FORMULARY; GENE AMPLIFICATION; HERB; INTRON; LONICERA JAPONICA; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; TECHNIQUE; UNINDEXED SEQUENCE;

DNA BARCODING, TAXONOMIC; DNA, PLANT; GENES, PLANT; GENETIC MARKERS; LONICERA; POLYMERASE CHAIN REACTION; SPECIES SPECIFICITY;

CAPRIFOLIACEAE; FLOS; LONICERA; LONICERA JAPONICA;

EID: 79251541798     PISSN: 00320943     EISSN: 14390221     Source Type: Journal    
DOI: 10.1055/s-0030-1250324     Document Type: Article

References (32)

1. Chinese Pharmacopoeia Commission. The Pharmacopoeia of the People's Republic of China, Vol. 1. Beijing Chemical Industry Press 2010 28-29 205-206
2. Geng S L., Xu H H. Research survey of good agriculture practice of Flos Lonicerae. Chin Tradit Herbal Drugs 2003 34 F14-17
3. Ren M T., Cheng J, Song Y, Sheng L S., Li P, Qi L W. Identification and quantification of 32 bioactive compounds in 4 Lonicera species by high performance liquid chromatography coupled with time-of-flight mass spectrometry. J Pharm Biomed Anal 2008 48 1351-1360
4. Song Y, Li S L., Wu M H., Li H J., Li P. Qualitative and quantitative analysis of iridoid glycosides in the flower buds of Lonicera species by capillary high performance liquid chromatography coupled with mass spectrometric detector. Anal Chim Acta 2006 564 211-218
5. Wang C Z., Li P, Ding J Y., Fishbein A, Yung C S. Discrimination of Lonicera japonica THUNB. from different geographical origins using re (Pubitemid 46570971)
6. Peng X X., Li W D., Wang W Q., Bai G B. Identification of Lonicera japonica by PCR-RFLP and allele-specific diagnostic PCR based on sequences of internal transcribed spacer regions. Planta Med 2009 75 1-3
7. Hebert P D. N., Cywinska A, Ball S L., DeWaard J R. Biological identification through DNA barcodes. Proc R Soc B Biol Sci 2003 270 313-321 (Pubitemid 36228536)
8. Hebert P D. N., Gregory T R. The promise barcoding for taxonomy. Syst Biol 2005 54 852-859
9. Schindel D E., Miller S E. DNA barcoding, a useful tool for taxonomists. Nature 2005 435 17 (Pubitemid 40655892)
10. Lahaye R, van der Bank M, Bogarin D, Warner J, Pupulin F, Gigot G. DNA barcoding the floras of biodiversity hotspots. Proc Natl Acad Sci USA 2008 105 2923-2928 (Pubitemid 351723645)
11. Hebert P D. N., Ratnasingham S, de Waard J R. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc Biol Sci 2003 270 (Suppl. 1) S96-S99 (Pubitemid 36960325)
12. Marshall E. Taxonomy - will DNA barcodes breathe life into classification? Science 2005 307 1037 (Pubitemid 40262090)
13. Kress W J., Wurdack K J., Zimmer E A., Weigt L A., Janzen D H. Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci USA 2005 102 8369-8374 (Pubitemid 40803501)
14. Kress W J., Erickson D L. A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS ONE 2007 2 e508
15. Newmaster S G., Fazekas A J., Steeves R A. D., Janovec J. Testing candidate plant barcode regions in the Myristicaceae. Mol Ecol Res 2008 8 480-490 (Pubitemid 351703576)
16. Song J Y., Yao H, Li Y, Li X W., Lin Y L., Liu C, Han J P., Xie C X., Chen S L. Authentication of the family Polygonaceae in Chinese pharmacopoeia by DNA barcoding technique. J Ethnopharmacol 2009 124 434-439
17. Yao H, Song J Y., Ma X Y., Liu C, Li Y, Xu H X., Han J P., Duan L S., Chen S L. Identification of Dendrobium species by a candidate DNA barcode sequence: the chloroplast psbA-trnH intergenic region. Planta Med 2009 75 667-669
18. Chen S L., Yao H, Han J P., Liu C, Song J Y., Shi L C., Zhu Y J., Ma X Y., Gao T, Pang X H., Luo K, Li Y, Li X W., Jia X C., Lin Y L., Leon C. Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS ONE 2010 5 e8613
19. Pang X H., Song J Y., Zhu Y J., Xie C X., Chen S L. Using DNA barcoding to identify species within Euphorbiaceae. Planta Med 2010
20. Taberlet P, Coissac E, Pompanon F, Gielly L, Miquel C, Valentini A, Vermat T, Corthier G, Brochmann C, Willerslev E. Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding. Nucleic Acids Res 2007 35 e14
21. CBOL Plant Working Group. A DNA barcode for land plants. Proc Natl Acad Sci USA 2009 106 12794-12797
22. Sass C, Little D P., Stevenson D W., Specht C D. DNA barcoding in the Cycadales: testing the potential of proposed barcoding markers for species identification of Cycads. PLoS ONE 2007 2 e1154
23. Taberlet P, Gielly T J., Pautou G, Bouvet J. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol Biol 1991 17 1105-1109
24. Wang Y J., Liu J Q. A preliminary investigation on the phylogeny of Saussurea (Asteraceae: Cardueae) based on chloroplast DNA TrnL-F sequences. Acta Phytotaxon Sin 2004 42 136-153
25. Thompson J D., Higgins D G., Gibson T J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994 22 4673
26. Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007 24 1596-1599 (Pubitemid 47236692)
27. Meier R, Zhang G Y., Ali F. The use of mean instead of smallest inter-specific distances exaggerates the size of the Barcoding Gap and leads to misidentification. Syst Biol 2008 57 809-813
28. Meyer C P., Paulay G. DNA barcoding: Error rates based on comprehensive sampling. PLoS Biol 2005 3 2229-2238
29. Ross H A., Murugan S, Li W L. S. Testing the reliability of genetic methods of species identification via simulation. Syst Biol 2008 57 216-230 (Pubitemid 351502942)
30. Storchová H, Olson M S. The architecture of the chloroplast psbA-trnH non-coding region in angiosperms. Plant Syst Evol 2007 268 235-256 (Pubitemid 351567335)
31. Quandt D, Müller K, Stech M, Frahm J P., Frey W, Hilu K W., Borsch T. Molecular evolution of the chloroplast trnL-F region in land plants. Monogr Syst Bot Mo Bot Gard 2004 98 13-37
32. Shaw J, Lickey E B., Schilling E E., Small R L. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. Am J Bot 2007 94 275-288 (Pubitemid 46955026)