-
1
-
-
33645524495
-
Variation within and among species in gene expression: raw material for evolution
-
10.1111/j.1365-294X.2006.02868.x, 16626448
-
Whitehead A, Crawford DL. Variation within and among species in gene expression: raw material for evolution. Mol Ecol 2006, 15:1197-1211. 10.1111/j.1365-294X.2006.02868.x, 16626448.
-
(2006)
Mol Ecol
, vol.15
, pp. 1197-1211
-
-
Whitehead, A.1
Crawford, D.L.2
-
2
-
-
34347330290
-
Quantifying variation in gene expression
-
10.1111/j.1365-294X.2007.03354.x, 17594433
-
Clark TA, Townsend JP. Quantifying variation in gene expression. Mol Ecol 2007, 16:2613-2616. 10.1111/j.1365-294X.2007.03354.x, 17594433.
-
(2007)
Mol Ecol
, vol.16
, pp. 2613-2616
-
-
Clark, T.A.1
Townsend, J.P.2
-
3
-
-
34548013932
-
The evolution of sex-biased genes and sex-biased gene expression
-
10.1038/nrg2167, 17680007
-
Ellegren H, Parsch J. The evolution of sex-biased genes and sex-biased gene expression. Nat Rev Genet 2007, 8:689-698. 10.1038/nrg2167, 17680007.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 689-698
-
-
Ellegren, H.1
Parsch, J.2
-
4
-
-
0035733752
-
The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster
-
10.1038/ng766, 11726925
-
Jin W, Riley RM, Wolfinger RD, White KP, Passador-Gurgel G, Gibson G. The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nat Genet 2001, 29:389-395. 10.1038/ng766, 11726925.
-
(2001)
Nat Genet
, vol.29
, pp. 389-395
-
-
Jin, W.1
Riley, R.M.2
Wolfinger, R.D.3
White, K.P.4
Passador-Gurgel, G.5
Gibson, G.6
-
5
-
-
4644370178
-
Extensive sex-specific nonadditivity of gene expression in Drosophila melanogaster
-
10.1534/genetics.104.026583, 1471026, 15342517
-
Gibson G, Riley-Berger R, Harshman L, Kopp A, Vacha S, Nuzhdin S, Wayne M. Extensive sex-specific nonadditivity of gene expression in Drosophila melanogaster. Genetics 2004, 167:1791-1799. 10.1534/genetics.104.026583, 1471026, 15342517.
-
(2004)
Genetics
, vol.167
, pp. 1791-1799
-
-
Gibson, G.1
Riley-Berger, R.2
Harshman, L.3
Kopp, A.4
Vacha, S.5
Nuzhdin, S.6
Wayne, M.7
-
6
-
-
61349113311
-
Systems genetics of complex traits in Drosophila melanogaster
-
10.1038/ng.332, 2752214, 19234471
-
Ayroles JF, Carbone MA, Stone EA, Jordan KW, Lyman RF, Magwire MM, Rollmann SM, Duncan LH, Lawrence F, Anholt RRH, Mackay TF. Systems genetics of complex traits in Drosophila melanogaster. Nat Genet 2009, 41:299-307. 10.1038/ng.332, 2752214, 19234471.
-
(2009)
Nat Genet
, vol.41
, pp. 299-307
-
-
Ayroles, J.F.1
Carbone, M.A.2
Stone, E.A.3
Jordan, K.W.4
Lyman, R.F.5
Magwire, M.M.6
Rollmann, S.M.7
Duncan, L.H.8
Lawrence, F.9
Anholt, R.R.H.10
Mackay, T.F.11
-
7
-
-
10844284609
-
Additivity and trans-acting effects on gene expression in male Drosophila simulans
-
10.1534/genetics.104.030973, 1448806, 15579694
-
Wayne ML, Pan YJ, Nuzhdin SV, McIntyre LM. Additivity and trans-acting effects on gene expression in male Drosophila simulans. Genetics 2004, 168:1413-1420. 10.1534/genetics.104.030973, 1448806, 15579694.
-
(2004)
Genetics
, vol.168
, pp. 1413-1420
-
-
Wayne, M.L.1
Pan, Y.J.2
Nuzhdin, S.V.3
McIntyre, L.M.4
-
8
-
-
39149101833
-
Variable sexually dimorphic gene expression in laboratory strains of Drosophila melanogaster
-
10.1186/1471-2164-8-454, 2244638, 18070343
-
Baker DA, Meadows LA, Wang J, Dow JA, Russell S. Variable sexually dimorphic gene expression in laboratory strains of Drosophila melanogaster. BMC Genomics 2007, 8:454. 10.1186/1471-2164-8-454, 2244638, 18070343.
-
(2007)
BMC Genomics
, vol.8
, pp. 454
-
-
Baker, D.A.1
Meadows, L.A.2
Wang, J.3
Dow, J.A.4
Russell, S.5
-
9
-
-
0023998356
-
Genetic variation of Drosophila melanogaster natural populations
-
10.1016/0168-9525(88)90098-4, 3149056
-
David JR, Capy P. Genetic variation of Drosophila melanogaster natural populations. Trends Genet 1988, 4:106-111. 10.1016/0168-9525(88)90098-4, 3149056.
-
(1988)
Trends Genet
, vol.4
, pp. 106-111
-
-
David, J.R.1
Capy, P.2
-
10
-
-
22344444998
-
Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations
-
10.1101/gr.3541005, 1142469, 15930491
-
Haddrill PR, Thornton KR, Charlesworth B, Andolfatto P. Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations. Genome Res 2005, 15:790-799. 10.1101/gr.3541005, 1142469, 15930491.
-
(2005)
Genome Res
, vol.15
, pp. 790-799
-
-
Haddrill, P.R.1
Thornton, K.R.2
Charlesworth, B.3
Andolfatto, P.4
-
11
-
-
24744465216
-
Inferring the effects of demography and selection on Drosophila melanogaster populations from a chromosome-wide scan of DNA variation
-
10.1093/molbev/msi207, 15987874
-
Ometto L, Glinka S, De Lorenzo D, Stephan W. Inferring the effects of demography and selection on Drosophila melanogaster populations from a chromosome-wide scan of DNA variation. Mol Biol Evol 2005, 22:2119-2130. 10.1093/molbev/msi207, 15987874.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2119-2130
-
-
Ometto, L.1
Glinka, S.2
De Lorenzo, D.3
Stephan, W.4
-
12
-
-
33644763127
-
Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster
-
10.1534/genetics.105.048223, 1456302, 16299396
-
Thornton K, Andolfatto P. Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster. Genetics 2006, 172:1607-1619. 10.1534/genetics.105.048223, 1456302, 16299396.
-
(2006)
Genetics
, vol.172
, pp. 1607-1619
-
-
Thornton, K.1
Andolfatto, P.2
-
13
-
-
33846589670
-
The recent demographic and adaptive history of Drosophila melanogaster
-
10.1038/sj.hdy.6800901, 17006533
-
Stephan W, Li H. The recent demographic and adaptive history of Drosophila melanogaster. Heredity 2007, 98:65-68. 10.1038/sj.hdy.6800901, 17006533.
-
(2007)
Heredity
, vol.98
, pp. 65-68
-
-
Stephan, W.1
Li, H.2
-
14
-
-
3242777120
-
Mitochondrial genome size variation in New World and Old World populations of Drosophila melanogaster
-
10.1038/sj.hdy.6800484, 15138453
-
Townsend JP, Rand DM. Mitochondrial genome size variation in New World and Old World populations of Drosophila melanogaster. Heredity 2004, 93:98-103. 10.1038/sj.hdy.6800484, 15138453.
-
(2004)
Heredity
, vol.93
, pp. 98-103
-
-
Townsend, J.P.1
Rand, D.M.2
-
15
-
-
0036790812
-
Hitchhiking mapping: a population-based fine-mapping strategy for adaptive mutations in Drosophila melanogaster
-
10.1073/pnas.202336899, 130566, 12351680
-
Harr B, Kauer M, Schlötterer C. Hitchhiking mapping: a population-based fine-mapping strategy for adaptive mutations in Drosophila melanogaster. Proc Natl Acad Sci USA 2002, 99:12949-12954. 10.1073/pnas.202336899, 130566, 12351680.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 12949-12954
-
-
Harr, B.1
Kauer, M.2
Schlötterer, C.3
-
16
-
-
0347065347
-
Demography and natural selection have shaped genetic variation in Drosophila melanogaster: a multi-locus approach
-
1462856, 14668381
-
Glinka S, Ometto L, Mousset S, Stephan W, De Lorenzo D. Demography and natural selection have shaped genetic variation in Drosophila melanogaster: a multi-locus approach. Genetics 2003, 165:1269-1278. 1462856, 14668381.
-
(2003)
Genetics
, vol.165
, pp. 1269-1278
-
-
Glinka, S.1
Ometto, L.2
Mousset, S.3
Stephan, W.4
De Lorenzo, D.5
-
17
-
-
33750491918
-
Inferring the demographic history and rate of adaptive substitution in Drosophila
-
10.1371/journal.pgen.0020166, 1599771, 17040129
-
Li H, Stephan W. Inferring the demographic history and rate of adaptive substitution in Drosophila. PLoS Genet 2006, 2:e166. 10.1371/journal.pgen.0020166, 1599771, 17040129.
-
(2006)
PLoS Genet
, vol.2
-
-
Li, H.1
Stephan, W.2
-
18
-
-
46249106059
-
Gene expression variation in African and European populations of Drosophila melanogaster
-
10.1186/gb-2008-9-1-r12, 2395247, 18208589
-
Hutter S, Saminadin-Peter SS, Stephan W, Parsch J. Gene expression variation in African and European populations of Drosophila melanogaster. Genome Biol 2008, 9:R12. 10.1186/gb-2008-9-1-r12, 2395247, 18208589.
-
(2008)
Genome Biol
, vol.9
-
-
Hutter, S.1
Saminadin-Peter, S.S.2
Stephan, W.3
Parsch, J.4
-
19
-
-
0346460960
-
Paucity of genes on the Drosophila X chromosome showing male-biased expression
-
10.1126/science.1079190, 1363366, 12511656
-
Parisi M, Nuttall R, Naiman D, Bouffard G, Malley J, Andrews J, Eastman S, Oliver B. Paucity of genes on the Drosophila X chromosome showing male-biased expression. Science 2003, 299:697-700. 10.1126/science.1079190, 1363366, 12511656.
-
(2003)
Science
, vol.299
, pp. 697-700
-
-
Parisi, M.1
Nuttall, R.2
Naiman, D.3
Bouffard, G.4
Malley, J.5
Andrews, J.6
Eastman, S.7
Oliver, B.8
-
20
-
-
0037504137
-
Sex-dependent gene expression and evolution of the Drosophila transcriptome
-
10.1126/science.1085881, 12805547
-
Ranz JM, Castillo-Davis CI, Meiklejohn CD, Hartl DL. Sex-dependent gene expression and evolution of the Drosophila transcriptome. Science 2003, 300:1742-1745. 10.1126/science.1085881, 12805547.
-
(2003)
Science
, vol.300
, pp. 1742-1745
-
-
Ranz, J.M.1
Castillo-Davis, C.I.2
Meiklejohn, C.D.3
Hartl, D.L.4
-
21
-
-
36749011363
-
Simpler mode of inheritance of transcriptional variation in male Drosophila melanogaster
-
10.1073/pnas.0705441104, 2141819, 18003923
-
Wayne ML, Telonis-Scott M, Bono LM, Harshman L, Kopp A, Nuzhdin SV, McIntyre LM. Simpler mode of inheritance of transcriptional variation in male Drosophila melanogaster. Proc Natl Acad Sci USA 2007, 104:18577-18582. 10.1073/pnas.0705441104, 2141819, 18003923.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 18577-18582
-
-
Wayne, M.L.1
Telonis-Scott, M.2
Bono, L.M.3
Harshman, L.4
Kopp, A.5
Nuzhdin, S.V.6
McIntyre, L.M.7
-
22
-
-
37849044967
-
Polymorphic Y chromosomes harbor cryptic variation with manifold functional consequences
-
10.1126/science.1148861, 18174442
-
Lemos B, Araripe LO, Hartl DL. Polymorphic Y chromosomes harbor cryptic variation with manifold functional consequences. Science 2008, 319:91-93. 10.1126/science.1148861, 18174442.
-
(2008)
Science
, vol.319
, pp. 91-93
-
-
Lemos, B.1
Araripe, L.O.2
Hartl, D.L.3
-
23
-
-
78751656039
-
Y not a dead end: epistatic interactions between Y-linked regulatory polymorphisms and genetic background affect global gene expression in Drosophila melanogaster
-
10.1534/genetics.110.118109, 20551438
-
Jiang PP, Hartl DL, Lemos B. Y not a dead end: epistatic interactions between Y-linked regulatory polymorphisms and genetic background affect global gene expression in Drosophila melanogaster. Genetics 2010, 186:109-118. 10.1534/genetics.110.118109, 20551438.
-
(2010)
Genetics
, vol.186
, pp. 109-118
-
-
Jiang, P.P.1
Hartl, D.L.2
Lemos, B.3
-
24
-
-
35048822011
-
Distinctly different sex ratios in African and European populations of Drosophila melanogaster inferred from chromosomewide single nucleotide polymorphism data
-
10.1534/genetics.107.074922, 2013676, 17660560
-
Hutter S, Li H, Beisswanger S, De Lorenzo D, Stephan W. Distinctly different sex ratios in African and European populations of Drosophila melanogaster inferred from chromosomewide single nucleotide polymorphism data. Genetics 2007, 177:469-480. 10.1534/genetics.107.074922, 2013676, 17660560.
-
(2007)
Genetics
, vol.177
, pp. 469-480
-
-
Hutter, S.1
Li, H.2
Beisswanger, S.3
De Lorenzo, D.4
Stephan, W.5
-
25
-
-
60149106761
-
The influence of demography and weak selection on the McDonald-Kreitman test: an empirical study in Drosophila
-
10.1093/molbev/msn297, 19126864
-
Parsch J, Zhang Z, Baines JF. The influence of demography and weak selection on the McDonald-Kreitman test: an empirical study in Drosophila. Mol Biol Evol 2009, 26:691-698. 10.1093/molbev/msn297, 19126864.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 691-698
-
-
Parsch, J.1
Zhang, Z.2
Baines, J.F.3
-
26
-
-
2942612362
-
Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels and spotted DNA microarrays
-
Townsend JP. Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels and spotted DNA microarrays. BMC Bioinformatics 2004, 13:1-13.
-
(2004)
BMC Bioinformatics
, vol.13
, pp. 1-13
-
-
Townsend, J.P.1
-
27
-
-
33749859791
-
Sebida: a database for the functional and evolutionary analysis of genes with sex-biased expression
-
10.1093/bioinformatics/btl422, 16882652
-
Gnad F, Parsch J. Sebida: a database for the functional and evolutionary analysis of genes with sex-biased expression. Bioinformatics 2006, 22:2577-2579. 10.1093/bioinformatics/btl422, 16882652.
-
(2006)
Bioinformatics
, vol.22
, pp. 2577-2579
-
-
Gnad, F.1
Parsch, J.2
-
28
-
-
0042692890
-
Rapid evolution of male-biased gene expression in Drosophila
-
10.1073/pnas.1630690100, 188344, 12907700
-
Meiklejohn CD, Parsch J, Ranz JM, Hartl DL. Rapid evolution of male-biased gene expression in Drosophila. Proc Natl Acad Sci USA 2003, 100:9894-9899. 10.1073/pnas.1630690100, 188344, 12907700.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9894-9899
-
-
Meiklejohn, C.D.1
Parsch, J.2
Ranz, J.M.3
Hartl, D.L.4
-
29
-
-
67649416474
-
Gene expression during Drosophila melanogaster egg development before and after reproductive diapause
-
10.1186/1471-2164-10-242, 2700134, 19463195
-
Baker DA, Russell S. Gene expression during Drosophila melanogaster egg development before and after reproductive diapause. BMC Genomics 2009, 10:242. 10.1186/1471-2164-10-242, 2700134, 19463195.
-
(2009)
BMC Genomics
, vol.10
, pp. 242
-
-
Baker, D.A.1
Russell, S.2
-
30
-
-
69949139908
-
The transcriptional response of Drosophila melanogaster to infection with the sigma virus (Rhabdoviridae)
-
10.1371/journal.pone.0006838, 2730013, 19718442
-
Carpenter J, Hutter S, Baines JF, Roller J, Saminadin-Peter SS, Parsch J, Jiggins FM. The transcriptional response of Drosophila melanogaster to infection with the sigma virus (Rhabdoviridae). PLoS One 2009, 4:e6838. 10.1371/journal.pone.0006838, 2730013, 19718442.
-
(2009)
PLoS One
, vol.4
-
-
Carpenter, J.1
Hutter, S.2
Baines, J.F.3
Roller, J.4
Saminadin-Peter, S.S.5
Parsch, J.6
Jiggins, F.M.7
-
31
-
-
0037183880
-
A single p450 allele associated with insecticide resistance in Drosophila
-
10.1126/science.1074170, 12351787
-
Daborn PJ, Yen JL, Bogwitz MR, Le Goff G, Feil E, Jeffers S, Tijet N, Perry T, Heckel D, Batterham P, Feyereisen R, Wilson TG, ffrench-Constant RH. A single p450 allele associated with insecticide resistance in Drosophila. Science 2002, 297:2253-2256. 10.1126/science.1074170, 12351787.
-
(2002)
Science
, vol.297
, pp. 2253-2256
-
-
Daborn, P.J.1
Yen, J.L.2
Bogwitz, M.R.3
Le Goff, G.4
Feil, E.5
Jeffers, S.6
Tijet, N.7
Perry, T.8
Heckel, D.9
Batterham, P.10
Feyereisen, R.11
Wilson, T.G.12
ffrench-Constant, R.H.13
-
32
-
-
3242720690
-
World-wide survey of an Accord insertion and its association with DDT resistance in Drosophila melanogaster
-
10.1111/j.1365-294X.2004.02263.x, 15245421
-
Catania F, Kauer MO, Daborn PJ, Yen JL, Ffrench-Constant RH, Schlotterer C. World-wide survey of an Accord insertion and its association with DDT resistance in Drosophila melanogaster. Mol Ecol 2004, 13:2491-2504. 10.1111/j.1365-294X.2004.02263.x, 15245421.
-
(2004)
Mol Ecol
, vol.13
, pp. 2491-2504
-
-
Catania, F.1
Kauer, M.O.2
Daborn, P.J.3
Yen, J.L.4
Ffrench-Constant, R.H.5
Schlotterer, C.6
-
33
-
-
77957659569
-
Copy number variation and transposable elements feature in recent, ongoing adaptation at the Cyp6g1 locus
-
10.1371/journal.pgen.1000998, 2891717, 20585622
-
Schmidt JM, Good RT, Appleton B, Sherrard J, Raymant GC, Bogwitz MR, Martin J, Daborn PJ, Goddard ME, Batterham P, Robin C. Copy number variation and transposable elements feature in recent, ongoing adaptation at the Cyp6g1 locus. PLoS Genet 2010, 6:e1000998. 10.1371/journal.pgen.1000998, 2891717, 20585622.
-
(2010)
PLoS Genet
, vol.6
-
-
Schmidt, J.M.1
Good, R.T.2
Appleton, B.3
Sherrard, J.4
Raymant, G.C.5
Bogwitz, M.R.6
Martin, J.7
Daborn, P.J.8
Goddard, M.E.9
Batterham, P.10
Robin, C.11
-
34
-
-
41449108530
-
Opposing effects of dietary protein and sugar regulate a transcriptional target of Drosophila insulin-like peptide signaling
-
10.1016/j.cmet.2008.02.012, 18396138
-
Buch S, Melcher C, Bauer M, Katzenberger J, Pankratz MJ. Opposing effects of dietary protein and sugar regulate a transcriptional target of Drosophila insulin-like peptide signaling. Cell Metab 2008, 7:321-332. 10.1016/j.cmet.2008.02.012, 18396138.
-
(2008)
Cell Metab
, vol.7
, pp. 321-332
-
-
Buch, S.1
Melcher, C.2
Bauer, M.3
Katzenberger, J.4
Pankratz, M.J.5
-
35
-
-
65649089080
-
Control of metabolic homeostasis by stress signaling is mediated by the lipocalin NLaz
-
10.1371/journal.pgen.1000460, 2667264, 19390610
-
Hull-Thompson J, Muffat J, Sanchez D, Walker DW, Benzer S, Ganfornina MD, Jasper H. Control of metabolic homeostasis by stress signaling is mediated by the lipocalin NLaz. PLoS Genet 2009, 5:e1000460. 10.1371/journal.pgen.1000460, 2667264, 19390610.
-
(2009)
PLoS Genet
, vol.5
-
-
Hull-Thompson, J.1
Muffat, J.2
Sanchez, D.3
Walker, D.W.4
Benzer, S.5
Ganfornina, M.D.6
Jasper, H.7
-
36
-
-
0035001337
-
Adult female Drosophila pseudoobscura survive and carry fertile sperm through long periods in the cold: populations are unlikely to suffer substantial bottlenecks in overwintering
-
Collett JI, Jarman MG. Adult female Drosophila pseudoobscura survive and carry fertile sperm through long periods in the cold: populations are unlikely to suffer substantial bottlenecks in overwintering. Evolution Int J Organic Evolution 2001, 55:840-845.
-
(2001)
Evolution Int J Organic Evolution
, vol.55
, pp. 840-845
-
-
Collett, J.I.1
Jarman, M.G.2
-
37
-
-
0024730135
-
Genetic localization of foraging (for): a major gene for larval behavior in Drosophila melanogaster
-
1203778, 2509284
-
de Belle JS, Hilliker AJ, Sokolowski MB. Genetic localization of foraging (for): a major gene for larval behavior in Drosophila melanogaster. Genetics 1989, 123:157-163. 1203778, 2509284.
-
(1989)
Genetics
, vol.123
, pp. 157-163
-
-
de Belle, J.S.1
Hilliker, A.J.2
Sokolowski, M.B.3
-
38
-
-
0027301045
-
Mutations in the larval foraging gene affect adult locomotory behavior after feeding in Drosophila melanogaster
-
10.1073/pnas.90.11.5044, 46650, 8506349
-
Pereira HS, Sokolowski MB. Mutations in the larval foraging gene affect adult locomotory behavior after feeding in Drosophila melanogaster. Proc Natl Acad Sci USA 1993, 90:5044-5046. 10.1073/pnas.90.11.5044, 46650, 8506349.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 5044-5046
-
-
Pereira, H.S.1
Sokolowski, M.B.2
-
39
-
-
0032168918
-
The foraging gene affects adult but not larval olfactory-related behavior in Drosophila melanogaster
-
10.1016/S0166-4328(97)00206-4, 9754873
-
Shaver SA, Varnam CJ, Hilliker AJ, Sokolowski MB. The foraging gene affects adult but not larval olfactory-related behavior in Drosophila melanogaster. Behav Brain Res 1998, 95:23-29. 10.1016/S0166-4328(97)00206-4, 9754873.
-
(1998)
Behav Brain Res
, vol.95
, pp. 23-29
-
-
Shaver, S.A.1
Varnam, C.J.2
Hilliker, A.J.3
Sokolowski, M.B.4
-
41
-
-
77952800173
-
On the utility of short intron sequences as a reference for the detection of positive and negative selection in Drosophila
-
10.1093/molbev/msq046, 20150340
-
Parsch J, Novozhilov S, Saminadin-Peter SS, Wong KM, Andolfatto P. On the utility of short intron sequences as a reference for the detection of positive and negative selection in Drosophila. Mol Biol Evol 2010, 27:1226-1234. 10.1093/molbev/msq046, 20150340.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1226-1234
-
-
Parsch, J.1
Novozhilov, S.2
Saminadin-Peter, S.S.3
Wong, K.M.4
Andolfatto, P.5
-
42
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
10.1038/351652a0, 1904993
-
McDonald JH, Kreitman M. Adaptive protein evolution at the Adh locus in Drosophila. Nature 1991, 351:652-654. 10.1038/351652a0, 1904993.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
43
-
-
0028965146
-
Sexual isolation in Drosophila melanogaster: a possible case of incipient speciation
-
10.1073/pnas.92.7.2519, 42249, 7708677
-
Wu CI, Hollocher H, Begun DJ, Aquadro CF, Xu Y, Wu ML. Sexual isolation in Drosophila melanogaster: a possible case of incipient speciation. Proc Natl Acad Sci USA 1995, 92:2519-2523. 10.1073/pnas.92.7.2519, 42249, 7708677.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 2519-2523
-
-
Wu, C.I.1
Hollocher, H.2
Begun, D.J.3
Aquadro, C.F.4
Xu, Y.5
Wu, M.L.6
-
44
-
-
0030711703
-
Incipient speciation by sexual isolation in Drosophila melanogaster: extensive genetic divergence without reinforcement
-
1208243, 9383062
-
Hollocher H, Ting CT, Wu ML, Wu CI. Incipient speciation by sexual isolation in Drosophila melanogaster: extensive genetic divergence without reinforcement. Genetics 1997, 147:1191-1201. 1208243, 9383062.
-
(1997)
Genetics
, vol.147
, pp. 1191-1201
-
-
Hollocher, H.1
Ting, C.T.2
Wu, M.L.3
Wu, C.I.4
-
45
-
-
33847608020
-
Gene expression polymorphism in Drosophila populations
-
10.1111/j.1365-294X.2007.03201.x, 17391405
-
Michalak P, Malone JH, Lee IT, Hoshino D, Ma D. Gene expression polymorphism in Drosophila populations. Mol Ecol 2007, 16:1179-1189. 10.1111/j.1365-294X.2007.03201.x, 17391405.
-
(2007)
Mol Ecol
, vol.16
, pp. 1179-1189
-
-
Michalak, P.1
Malone, J.H.2
Lee, I.T.3
Hoshino, D.4
Ma, D.5
-
46
-
-
44049106025
-
Complex genetic interactions underlying expression differences between Drosophila races: analysis of chromosome substitutions
-
10.1073/pnas.0711774105, 2359775, 18430800
-
Wang HY, Fu Y, McPeek MS, Lu X, Nuzhdin S, Xu A, Lu J, Wu ML, Wu CI. Complex genetic interactions underlying expression differences between Drosophila races: analysis of chromosome substitutions. Proc Natl Acad Sci USA 2008, 105:6362-6367. 10.1073/pnas.0711774105, 2359775, 18430800.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 6362-6367
-
-
Wang, H.Y.1
Fu, Y.2
McPeek, M.S.3
Lu, X.4
Nuzhdin, S.5
Xu, A.6
Lu, J.7
Wu, M.L.8
Wu, C.I.9
-
47
-
-
33750464822
-
History and structure of sub-Saharan populations of Drosophila melanogaster
-
10.1534/genetics.106.058693, 1602083, 16951082
-
Pool JE, Aquadro CF. History and structure of sub-Saharan populations of Drosophila melanogaster. Genetics 2006, 174:915-929. 10.1534/genetics.106.058693, 1602083, 16951082.
-
(2006)
Genetics
, vol.174
, pp. 915-929
-
-
Pool, J.E.1
Aquadro, C.F.2
-
48
-
-
53749100167
-
Contrasting patterns of natural variation in global Drosophila melanogaster populations
-
10.1111/j.1365-294X.2008.03944.x, 18986493
-
Nunes MD, Neumeier H, Schlötterer C. Contrasting patterns of natural variation in global Drosophila melanogaster populations. Mol Ecol 2008, 17:4470-4479. 10.1111/j.1365-294X.2008.03944.x, 18986493.
-
(2008)
Mol Ecol
, vol.17
, pp. 4470-4479
-
-
Nunes, M.D.1
Neumeier, H.2
Schlötterer, C.3
-
49
-
-
34447132938
-
The genetic basis of adaptive pigmentation variation in Drosophila melanogaster
-
10.1111/j.1365-294X.2007.03324.x, 2650379, 17614900
-
Pool JE, Aquadro CF. The genetic basis of adaptive pigmentation variation in Drosophila melanogaster. Mol Ecol 2007, 16:2844-2851. 10.1111/j.1365-294X.2007.03324.x, 2650379, 17614900.
-
(2007)
Mol Ecol
, vol.16
, pp. 2844-2851
-
-
Pool, J.E.1
Aquadro, C.F.2
-
50
-
-
33747839466
-
CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis
-
10.1093/nar/gkl038, 1538903, 16845058
-
Rainer J, Sanchez-Cabo F, Stocker G, Sturn A, Trajanoski Z. CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis. Nucleic Acids Res 2006, 34:W498-503. 10.1093/nar/gkl038, 1538903, 16845058.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Rainer, J.1
Sanchez-Cabo, F.2
Stocker, G.3
Sturn, A.4
Trajanoski, Z.5
-
51
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
10.1186/gb-2004-5-10-r80, 545600, 15461798
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 2004, 5:R80. 10.1186/gb-2004-5-10-r80, 545600, 15461798.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.J.19
Sawitzki, G.20
Smith, C.21
Smyth, G.22
Tierney, L.23
Yang, J.Y.24
Zhang, J.25
more..
-
52
-
-
0037975700
-
Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments
-
10.1186/gb-2002-3-12-research0071, 151173, 12537560
-
Townsend JP, Hartl DL. Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments. Genome Biol 2002, 3:RESEARCH0071. 10.1186/gb-2002-3-12-research0071, 151173, 12537560.
-
(2002)
Genome Biol
, vol.3
-
-
Townsend, J.P.1
Hartl, D.L.2
-
53
-
-
48449104617
-
GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis
-
10.1093/nar/gkn276, 2447756, 18487275
-
Zheng Q, Wang XJ. GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis. Nucleic Acids Res 2008, 36:W358-363. 10.1093/nar/gkn276, 2447756, 18487275.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Zheng, Q.1
Wang, X.J.2
-
54
-
-
75549089967
-
The UCSC genome browser database: update 2010
-
10.1093/nar/gkp939, 2808870, 19906737
-
Rhead B, Karolchik D, Kuhn RM, Hinrichs AS, Zweig AS, Fujita PA, Diekhans M, Smith KE, Rosenbloom KR, Raney BJ, Pohl A, Pheasant M, Meyer LR, Learned K, Hsu F, Hillman-Jackson J, Harte RA, Giardine B, Dreszer TR, Clawson H, Barber GP, Haussler D, Kent WJ. The UCSC genome browser database: update 2010. Nucleic Acids Res 2010, 38:D613-619. 10.1093/nar/gkp939, 2808870, 19906737.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Rhead, B.1
Karolchik, D.2
Kuhn, R.M.3
Hinrichs, A.S.4
Zweig, A.S.5
Fujita, P.A.6
Diekhans, M.7
Smith, K.E.8
Rosenbloom, K.R.9
Raney, B.J.10
Pohl, A.11
Pheasant, M.12
Meyer, L.R.13
Learned, K.14
Hsu, F.15
Hillman-Jackson, J.16
Harte, R.A.17
Giardine, B.18
Dreszer, T.R.19
Clawson, H.20
Barber, G.P.21
Haussler, D.22
Kent, W.J.23
more..
-
55
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Royal Stat Soc B 1995, 57:289-300.
-
(1995)
J Royal Stat Soc B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
56
-
-
65649117685
-
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
-
10.1093/bioinformatics/btp187, 19346325
-
Librado P, Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452. 10.1093/bioinformatics/btp187, 19346325.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
57
-
-
70149090063
-
R: A language and environment for statistical computing, reference index version 2.2.1
-
Vienna, Austria: R Foundation for Statistical Computing, R Development Core Team
-
R Development Core Team R: A language and environment for statistical computing, reference index version 2.2.1. 2005, Vienna, Austria: R Foundation for Statistical Computing, R Development Core Team.
-
(2005)
-
-
|