A new resource for characterizing X-linked genes in Drosophila melanogaster: Systematic coverage and subdivision of the X chromosome with nested, Y-linked duplications

Genetics

Volumn 186, Issue 4, 2010, Pages 1095-1109

  Cook, R Kimberley ^a   Deal, Megan E ^a   Deal, Jennifer A ^a   Garton, Russell D ^a   Brown, C Adam ^a   Ward, Megan E ^a   Andrade, Rachel S ^a   Spana, Eric P ^b   Kaufman, Thomas C ^a   Cook, Kevin R ^a  

^a INDIANA UNIVERSITY   (United States)

^b DUKE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME DELETION X; CHROMOSOME DUPLICATION; CHROMOSOME INVERSION; CHROMOSOME MUTATION; DROSOPHILA MELANOGASTER; FEMALE; GENETIC ANALYSIS; GENETIC SCREENING; IN VIVO STUDY; IRRADIATION; KARYOTYPE 46,XY; MALE; NONHUMAN; PRIORITY JOURNAL; X CHROMOSOME; X CHROMOSOME LINKAGE; Y CHROMOSOME LINKAGE;

ANIMALS; BIOMEDICAL TECHNOLOGY; DROSOPHILA MELANOGASTER; GENE DUPLICATION; GENES, X-LINKED; MALE; METHODS; MUTATION; RECOMBINATION, GENETIC; X CHROMOSOME; Y CHROMOSOME;

DROSOPHILA MELANOGASTER;

EID: 79251536198     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.110.123265     Document Type: Article

References (32)

1. AERTS, S., S. VILAIN, S. HU, L. C. TRANCHEVENT, R. BARRIOT et al., 2009 Integrating computational biology and forward genetics in Drosophila. PLoS Genet. 5: e1000351.
2. ASHBURNER, M., K. G. GOLIC and R. S. HAWLEY, 2005 Drosophila: A Laboratory Handbook. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
3. BELLEN, H. J., R. W. LEVIS, G. LIAO, Y. HE, J. W. CARLSON et al., 2004 The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. Genetics 167: 761-781.
4. S. Drosophila Information Service 32: 116.
5. CARPENTER, A. T., 2004 Salivary chromosome analysis of aberrations. Methods Mol. Biol. 247: 257-277.
6. DIETZL, G., D. CHEN, F. SCHNORRER, K. C. SU, Y. BARINOVA et al., 2007 A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila. Nature 448: 151-156.
7. ENGELS, W. R., D. M. JOHNSON-SCHLITZ, W. B. EGGLESTON and J. SVED, 1990 High-frequency P element loss in Drosophila is homolog dependent. Cell 62: 515-525. (Pubitemid 120035220)
8. ERICKSON, J. N., and E. P. SPANA, 2006 Mapping Drosophila genomic aberration breakpoints with comparative genome hybridization on microarrays. Methods Enzymol. 410: 377-386.
9. FANTI, L., and S. PIMPINELLI, 2004 Analysis of mitosis in squash preparations of larval brains: orcein, Giemsa, Hoechst 33258, DAPI, quinacrine, and N-banding. Methods Mol. Biol. 247: 325-332.
10. GOLIC, K. G., and M. M. GOLIC, 1996 Engineering the Drosophila genome: chromosome rearrangements by design. Genetics 144: 1693-1711.
11. GUAN, C., C. YE, X. YANG and J. GAO, 2010 A review of current large-scale mouse knockout efforts. Genesis 48: 73-85.
12. HAYASHI, S., K. ITO, Y. SADO, M. TANIGUCHI, A. AKIMOTO et al., 2002 GETDB, a database compiling expression patterns and molecular locations of a collection of Gal4 enhancer traps. Genesis 34: 58-61.
13. KENNISON, J. A., 1981 The genetic and cytological organization of the Y chromosome of Drosophila melanogaster. Genetics 98: 529-548. (Pubitemid 12172668)
14. LINDSLEY, D. L., and G. G. ZIMM, 1992 The Genome of Drosophila melanogaster. Academic Press, New York.
15. NI, J. Q., L. P. LIU, R. BINARI, R. HARDY, H. S. SHIM et al., 2009 A Drosophila resource of transgenic RNAi lines for neurogenetics. Genetics 182: 1089-1100.
16. NOVITSKI, E., and D. CHILDRESS, 1976 Compound chromosomes involving the X and the Y chromosomes, pp. 487-504 in The Genetics and Biology of Drosophila, edited by M. ASHBURNER and E. NOVITSKI. Academic Press, New York.
17. PARKS, A. L., K. R. COOK, M. BELVIN, N. A. DOMPE, R. FAWCETT et al., 2004 Systematic generation of high-resolution deletion coverage of the Drosophila melanogaster genome. Nat. Genet. 36: 288-292.
18. PATTERSON, J. T., W. STONE and S. BEDICHEK, 1937 Further studies on X chromosome balance in Drosophila. Genetics 22: 407-426.
19. RYDER, E., F. BLOWS, M. ASHBURNER, R. BAUTISTA-LLACER, D. COULSON et al., 2004 The DrosDel collection: a set of P-element insertions for generating custom chromosomal aberrations in Drosophila melanogaster. Genetics 167: 797-813
20. RYDER, E., M. ASHBURNER, R. BAUTISTA-LLACER, J. DRUMMOND, J. WEBSTER et al., 2007 The DrosDel deletion collection: a Drosophila genomewide chromosomal deficiency resource. Genetics 177: 615-629.
21. SALZ, H. K., 1992 The genetic analysis of snf: a Drosophila sex determination gene required for activation of Sex-lethal in both the germline and the soma. Genetics 130: 547-554.
22. SALZER, C. L., Y. ELIAS and J. P. KUMAR, 2010 The retinal determination gene eyes absent is regulated by the EGF receptor pathway throughout development in Drosophila. Genetics 184: 185-197.
23. SEHER, T. C., M. NARASIMHA, E. VOGELSANG and M. LEPTIN, 2007 Analysis and reconstitution of the genetic cascade controlling early mesoderm morphogenesis in the Drosophila embryo. Mech. Dev. 124: 167-179.
24. STEWART, B., and J. R. MERRIAM, 1973 Segmental aneuploidy of the X-chromosome. Drosophila Information Service 50: 167-170.
25. SUTTON, E., 1943 A cytogenetic study of the yellow-scute region of the X chromosome in Drosophila melanogaster. Genetics 28: 210-217.
26. THIBAULT, S. T., M. A. SINGER, W. Y. MIYAZAKI, B. MILASH, N. A. DOMPE et al., 2004 A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac. Nat. Genet. 36: 283-287.
27. TWEEDIE, S., M. ASHBURNER, K. FALLS, P. LEYLAND, P. MCQUILTON et al., 2009 FlyBase: enhancing Drosophila Gene Ontology annotations. Nucleic Acids Res. 37: D555-D559.
28. VENKEN, K. J., Y. HE, R. A. HOSKINS and H. J. BELLEN, 2006 P[acman]: a BAC transgenic platform for targeted insertion of large DNA fragments in D. melanogaster. Science 314: 1747-1751.
29. VENKEN, K. J. T., E. POPODI, S. L. HOLTZMAN, K. L. SCHULZE, S. PARK et al., 2010 A molecularly defined duplication set for the X chromosome of Drosophila melanogaster. Genetics 186: 1111-1125.
30. XIANG, Y., and R. S. HAWLEY, 2006 The mechanism of secondary nondisjunction in Drosophila melanogaster females. Genetics 174: 67-78.
31. ZHAO, M., P. SZAFRANSKI, C. A. HALL and S. GOODE, 2008 Basolateral junctions utilize warts signaling to control epithelial-mesenchymal transition and proliferation crucial for migration and invasion of Drosophila ovarian epithelial cells. Genetics 178: 1947-1971.
32. ZIMMERING, S., and C. K. WU, 1964 Meiotic X-Y exchange and nondisjunction induced by irradiation in the Drosophila male. Genetics 50: 633-638.