Association of an SNP marker in exon 24 of a class 3 phosphoinositide-3-kinase (PIK3C3) gene with production traits in Duroc pigs

Animal Science Journal

Volumn 82, Issue 1, 2011, Pages 46-51

  Hirose, Kensuke ^a   Takizawa, Tatsuya ^b   Fukawa, Kazuo ^a   Ito, Tetsuya ^a   Ueda, Masayuki ^c   Hayashi, Yoichi ^c   Tanaka, Kazuaki ^b  

^a ZEN NOH   (Japan)

^b AZABU UNIVERSITY   (Japan)

^c National Federation of Agricultural Co operative Associations   (Japan)

Author keywords

AIC; Pig; PIK3C3; Polymorphism

Indexed keywords

PHOSPHATIDYLINOSITOL 3 KINASE;

ANIMAL; ARTICLE; BREEDING; EXON; GENE FREQUENCY; GENETIC MARKER; GENETICS; MEAT; PHYSIOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM; SWINE; WEIGHT GAIN;

ANIMALS; BREEDING; EXONS; GENE FREQUENCY; GENETIC MARKERS; MEAT; PHOSPHATIDYLINOSITOL 3-KINASES; POLYMORPHISM, SINGLE NUCLEOTIDE; SUS SCROFA; WEIGHT GAIN;

SUIDAE; SUS;

EID: 79251530802     PISSN: 13443941     EISSN: 17400929     Source Type: Journal    
DOI: 10.1111/j.1740-0929.2010.00816.x     Document Type: Article

References (22)

1. Akaike H. 1974. A new look at the statistical identification model. IEEE Transactions on Automatic Control 19, 716-723.
2. Akaike H. 1987. Factor analysis and AIC. Psychometrika 52, 317-332.
3. Bidanel JP, Milan D, Iannuccelli N, Amigues Y, Boscher MY, Bourgeois F, Caritez JC, Gruand J, Roy PL, Lagant H, Quintanilla R, Renard C, Gellin J, Ollivier L, Chevalet C. 2001. Detection of quantitative trait loci for growth and fatness in pigs. Genetics Selection Evolution 33, 289-309.
4. Buske B, Sternstein I, Brockmann G. 2006. QTL and candidate genes for fecundity in sows. Animal Reproduction Science 95, 167-183.
5. Czech MP, Corvera S. 1999. Signaling mechanisms that regulate glucose transport. The Journal of Biological Chemistry 274, 1865-1868.
6. Edwards DB, Ernst CW, Raney NE, Doumit ME, Hoge MD, Bates RO. 2008a. QTL mapping in an F2 Duroc×Pietrain resource population: II. Carcass and meat quality traits. Journal of Animal Science 86, 254-266.
7. Edwards DB, Ernst CW, Tenmpelman RJ, Rosa GJM, Raney NE, Hoge MD, Bates RO. 2008b. QTL mapping in an F2 Duroc×Pietrain resource population: I. Growth traits. Journal of Animal Science 86, 241-253.
8. Fukawa K, Sugiyama T, Kusuhara S, Kudoh O, Kameyama K. 2001. Model selection and genetic parameter estimation for performance traits, body measurement traits and leg score traits in a closed population of Duroc pigs. Animal Science Journal 72, 97-106.
9. Groeneveld E. 1996. REML VCE: A Multivariate Multi-model Restricted Maximum Likelihood (Co)Variance Component Estimation Package Version 3.2 User's Guide. Institute of Animal Husbandry and Animal Behavior, Federal Research Center of Agriculture, Mariensee.
10. Groeneveld E, Kovac M, Wang T, Fernando RL. 1992. A generalized computing procedure for setting up and general purpose BLUP package for multivariate prediction and estimation. Archiv für Tierzucht 35, 399-412.
11. Kim JH, Choi BH, Lim HT, Park EW, Lee SH, Seo BY, Cho IC, Lee JG, Oh SJ, Jeon JT. 2005b. Characterization of phosphoinositide-3-kinase, class 3 (PIK3C3) gene and association tests with quantitative traits in pigs. Asian-Australasian Journal of Animal Science 18, 1701-1707.
12. Kim JH, Lee YS, Park EW, Seo BY, Cho IC, Lee JG, Oh SJ, Leed JH, Jeona JT. 2005a. Assignment 1 of the phosphoinositide-3-kinase, class 3 (PIK3C3) gene to porcine chromosome 6q22→q23 by somatic cell and radiation hybrid panel mapping. Cytogenetic and Genome Research 108, 362A.
13. Óvilo C, Oliver A, Noguera JL, Clop A, Barragán C, Varona L, Rodríguez C, Toro M, Sánchez A, Pérez-Enciso M, Silió L. 2002. Test for positional candidate genes for body composition on pig chromosome 6. Genetics Selection Evolution 34, 465-479.
14. Óvilo C, Pérez-Enciso M, Barragán C, Clop A, Rodríguez C, Oliver MA, Toro M, Noguera JL. 2000. A QTL for intramuscular fat and backfat thickness is located on porcine Chromosome 6. Mammalian Genome 11, 344-346.
15. Patterson HD, Thompson R. 1971. Recovery of inter-block information when block sizes are unequal. Biometrika 58, 545-554.
16. Prasad SVN, Laporte SA, Chamberlain D, Caron MG, Barak L, Rockman HA. 2002. Phosphoinositide 3-kinase regulates β2-adrenergic receptor endocytosis by AP-2 recruitment to the receptor/β-arrestin complex. The Journal of Cell Biology 158, 563-575.
17. Sato S, Oyamada Y, Atsuji K, Nade T, Sato S, Kobayashi E, Mitsuhashi T, Nirasawa K, Komatsda A, Saito Y, Terai S, Hayashi T, Sugimoto Y. 2003. Quantitative trait loci analysis for growth and carcass traits in a Meishan×Duroc F2 resource population. Journal of Animal Science 81, 2938-2949.
18. Shepherd PR, Withers DJ, Siddle K. 1998. Phosphoinositide 3-kinase: the key switch mechanism in insulin signaling. Biochemistry Journal 333, 471-490.
19. Stopkova P, Saito T, Papolos D, Vevera J, Paclt I, Zukov I, Bersson BY, Margolis BA, Strous RD, Lachman HM. 2004. Identification of PIK3C3 promoter variant associated with bipolar disorder and schizophrenia. Biological Psychiatry 55, 981-988.
20. Wada Y, Kashiwagi N. 1990. Selecting statistical models with information statistics. Journal of Dairy Science 73, 3575-3582.
21. Yue G, Stratil A, Kopecny M, Schroffelova D, Schroffël J, Hojny J, Cepica S, Davoli R, Zambonelli P, Brunsch C, Sternstein I, Moser G, Bartenschlager H, Reiner G, Geldermann H. 2003. Linkage and QTL mapping for Sus scrofa chromosome 6. Journal of Animal Breeding and Genetics 120, 45-55.
22. Zhang JH, Xiong YZ, Zuo B, Lei MG, Jiang SW, Li FE, Zheng R, Li JL, Xu DQ. 2007. Quantitative trait loci for carcass traits on pig chromosomes 4, 6, 7, 8 and 13. Journal of Applied Genetics 48, 363-369.