Diversity of the formyltetrahydrofolate synthetase (FTHFS) gene in the proximal and mid ostrich colon

Current Microbiology

Volumn 62, Issue 1, 2011, Pages 1-6

  Matsui, Hiroki ^a   Yoneda, Saori ^a   Ban Tokuda, Tomomi ^a   Wakita, Masaaki ^a  

^a MIE UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; FORMATE TETRAHYDROFOLATE LIGASE;

ANIMAL TISSUE; ARTICLE; ASCENDING COLON; BACTERIAL FLORA; DNA EXTRACTION; GENE CLUSTER; GENE LIBRARY; GENE SEQUENCE; GENETIC VARIABILITY; MICROBIAL DIVERSITY; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OSTRICH; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TRANSVERSE COLON;

ANIMALS; BACTERIA; BACTERIAL PROTEINS; CLUSTER ANALYSIS; COLON; DNA, BACTERIAL; FORMATE-TETRAHYDROFOLATE LIGASE; GENETIC VARIATION; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; STRUTHIONIFORMES;

BACTERIA (MICROORGANISMS); OTUS; STRUTHIONIFORMES;

EID: 79151484738     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-010-9661-y     Document Type: Article

References (24)

1. SF Altschul TL Madden AA Schäffer, et al. 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402 1:CAS:528:DyaK2sXlvFyhu7w%3D 10.1093/nar/25.17.3389 9254694 (Pubitemid 27359211)
2. KG De Graeve JP Grivet M Durand, et al. 1994 Competition between reductive acetogenesis and methanogenesis in the pig large-intestinal flora J Appl Bacteriol 76 55 61 8144406
3. V Fievez L Mbanzamihigo F Piatton, et al. 2001 Evidence for reductive acetogenesis and its nutritional significance in ostrich hindgut as estimated from in vitro incubactions J Anim Physiol A Anim Nutr 85 271 280 1:STN:280:DC%2BD3Mnjs1OltA%3D%3D 10.1046/j.1439-0396.2001.00320.x (Pubitemid 33583342)
4. T Fukatsu 1999 Acetone preservation: a practical technique for molecular analysis Mol Ecol 8 1935 1945 1:CAS:528:DC%2BD3cXlsVyntw%3D%3D 10.1046/j.1365-294x.1999.00795.x 10620236 (Pubitemid 30030939)
5. K Hattori H Matsui 2008 Diversity of fumarate reducing bacteria in the bovine rumen revealed by culture dependent and independent approaches Anaerobe 14 87 93 1:CAS:528:DC%2BD1cXlslKlsrk%3D 10.1016/j.anaerobe.2007.12.002 18276172
6. H Hayashi K Shibata MA Bakir, et al. 2007 Bacteroides coprophilus sp. nov., isolated from human faeces Int J Syst Evol Microbiol 57 1323 1326 1:CAS:528:DC%2BD2sXot12qsb4%3D 10.1099/ijs.0.64979-0 17551051 (Pubitemid 46958876)
7. H Juottonen PE Galand K Yrjälä 2006 Detection of methanogenic Archaea in peat: comparison of PCR primers targeting the mcrA gene Res Microbiol 157 914 921 1:CAS:528:DC%2BD28Xht1Kks7%2FK 10.1016/j.resmic.2006.08.006 17070673 (Pubitemid 44828465)
8. M Kitahara M Sakamoto M Ike, et al. 2005 Bacteroides plebeius sp. nov. and Bacteroides coprocola sp. nov., isolated from human faeces Int J Syst Evol Microbiol 55 2143 2147 1:CAS:528:DC%2BD2MXhtFCrsrzL 10.1099/ijs.0.63788-0 16166722 (Pubitemid 41410435)
9. MA Larkin G Blackshields NP Brown, et al. 2007 Clustal W and Clustal X version 2.0 Bioinformatics 23 2947 2948 1:CAS:528:DC%2BD2sXhtlaqsL%2FM 10.1093/bioinformatics/btm404 17846036 (Pubitemid 350162903)
10. AB Leaphart CR Lovell 2001 Recovery and analysis of formyltetrahydro- folate synthetase gene sequences from natural populations of acetogenic bacteria Appl Environ Microbiol 67 1392 1395 1:CAS:528:DC%2BD3MXhslSjt78%3D 10.1128/AEM.67.3.1392-1395.2001 11229939 (Pubitemid 33643588)
11. C Liu SM Finegold Y Song, et al. 2008 Reclassification of Clostridium coccoides, Ruminococcus hansenii, Ruminococcus hydrogenotrophicus, Ruminococcus luti, Ruminococcus productus and Ruminococcus schinkii as Blautia coccoides gen. nov., comb. nov., Blautia hansenii comb. nov., Blautia hydrogenotrophica comb. nov., Blautia luti comb. nov., Blautia producta comb. nov., Blautia schinkii comb. nov. and description of Blautia wexlerae sp. nov., isolated from human faeces Int J Syst Evol Microbiol 58 1896 1902 1:CAS:528:DC%2BD1cXhtFens7vN 10.1099/ijs.0.65208-0 18676476
12. LG Ljungdahl 1986 The autotrophic pathway of acetate synthesis in acetogenic bacteria Annu Rev Microbiol 40 415 450 1:CAS:528:DyaL28XlvVOiu7g%3D 10.1146/annurev.micro.40.1.415 3096193
13. H Matsui N Kojima K Tajima 2008 Diversity of formyltetrahydrofolate synthetase gene (fhs), a key enzyme for reductive acetogenesis, in the bovine rumen Biosci Biotechnol Biochem 72 3273 3276 1:CAS:528:DC%2BD1MXis1emsA%3D%3D 10.1271/bbb.70375 19060412
14. H Matsui Y Kato T Chikaraishi M Moritani T Ban-Tokuda M Wakita 2010 Microbial diversity in ostrich ceca as revealed by 16S ribosomal RNA gene clone library and detection of novel Fibrobacter species Anaerobe 16 83 93 1:CAS:528:DC%2BC3cXkvFKms7k%3D 10.1016/j.anaerobe.2009.07.005 19632349
15. Y Ohashi T Igarashi F Kumazawa, et al. 2007 Analysis of acetogenic bacteria in human feces with formyltetrahydrofolate synthetase sequences Biosci Microflora 26 37 40 1:CAS:528:DC%2BD2sXot12gtrY%3D
16. Y Ohashi A Andou M Kanaya, et al. 2009 Acetogenic bacteria mainly contribute to the disposal of hydrogen in the colon of healthy Japanese Biosci Microflora 28 17 19 1:CAS:528:DC%2BD1MXkvVGqtr8%3D
17. N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425 1:STN:280: DyaL1c7ovFSjsA%3D%3D 3447015
18. PD Schloss J Handelsman 2005 Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness Appl Environ Microbiol 71 1501 1506 1:CAS:528:DC%2BD2MXisVOisb8%3D 10.1128/AEM.71.3.1501-1506.2005 15746353 (Pubitemid 40396689)
19. YL Song CX Liu M McTeague, et al. 2004 Clostridium bartlettii sp. nov., isolated from human faeces Anaerobe 10 179 184 1:STN:280:DC%2BD283ntFCkuw%3D%3D 10.1016/j.anaerobe.2004.04.004 16701516 (Pubitemid 38789119)
20. D Swart RI Mackie JP Hayes 1993 Fermentative digestion in the ostrich (Struthio camelus var. domesticus), a large avian species that utilizes cellulose S Afr J Anim Sci 23 127 135
21. MJ Wolin TL Miller 1983 Interactions of microbial populations in cellulose fermentation Fed Proc 42 109 113 1:CAS:528:DyaL3sXmvVGitQ%3D%3D 6848372
22. MJ Wolin TL Miller MD Collins, et al. 2003 Formate-dependent growth and homoacetogenic fermentation by a bacterium from human feces: description of Bryantella formatexigens gen. no., sp.nov Appl Environ Microbiol 69 6321 6326 1:CAS:528:DC%2BD3sXotlKjtro%3D 10.1128/AEM.69.10.6321-6326.2003 14532100 (Pubitemid 37280364)
23. RF Wang WW Cao CE Cerniglia 1996 PCR detection and quantification of predominant anaerobic bacteria in human and animal fecal samples Appl Environ Microbiol 62 1242 1247 1:CAS:528:DyaK28XitFektr4%3D 8919784
24. J Xu MK Bjursell J Himrod, et al. 2003 A genomic view of the human Bacteroides thetaiotaomicron symbiosis Science 299 2074 2076 1:CAS:528:DC%2BD3sXitlCisL0%3D 10.1126/science.1080029 12663928 (Pubitemid 36383735)