Bacteroides plebeius sp. nov. and Bacteroides coprocola sp. nov., isolated from human faeces

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 5, 2005, Pages 2143-2147

  Kitahara, Maki ^a   Sakamoto, Mitsuo ^a   Ike, Masako ^a   Sakata, Shinji ^a   Benno, Yoshimi ^a  

^a RIKEN BIORESOURCE CENTER   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; RNA 16S;

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM ISOLATION; BACTEROIDES; BACTEROIDES COPROCOLA; BACTEROIDES PLEBEIUS; DNA CONTENT; DNA DNA HYBRIDIZATION; FECES ANALYSIS; GENE CLUSTER; GENE SEQUENCE; HUMAN; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; STRAIN IDENTIFICATION;

BACTERIAL TYPING TECHNIQUES; BACTEROIDES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FECES; GENES, RRNA; HUMANS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

BACTEROIDES; BACTEROIDES VULGATUS; NEGIBACTERIA;

EID: 26244435986     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63788-0     Document Type: Article

References (17)

1. Benno, Y., Watabe, J. & Mitsuoka, T. (1983). Bacteroides pyogenes sp. nov., Bacteroides suis sp. nov., and Bacteroides helcogenes sp. nov., new species from abscesses and feces of pigs. Syst Appl Microbiol 4, 396-407.
2. Benno, Y., Endo, K., Mizutani, T., Namba, Y., Komori, T. & Mitsuoka, T. (1989). Comparison of fecal microflora of elderly persons in rural and urban areas of Japan. Appl Environ Microbiol 55, 1100-1105.
3. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
4. Fenner, L., Roux, V., Mallet, M.-N. & Raoult, D. (2005). Bacteroides massiliensis sp. nov., isolated from blood culture of a newborn. Int J Syst Evol Microbiol 55, 1335-1337.
5. Finegold, S. M., Sutter, V. L. & Mathisen, G. E. (1983). Normal indigenous intestinal flora. In Human Intestinal Microflora in Health and Disease, pp. 3-31. Edited by D. J. Hentges. New York: Academic Press.
6. Hayashi, H., Sakamoto, M. & Benno, Y. (2002a). Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods. Microbiol Immunol 46, 535-548.
7. Hayashi, H., Sakamoto, M. & Benno, Y. (2002b). Fecal microbial diversity in a strict vegetarian as determined by molecular analysis and cultivation. Microbiol Immunol 46, 819-831.
8. Kitahara, M., Takamine, F., Imamura, T. & Benno, Y. (2001). Clostridium hiranonis sp. nov., a human intestinal bacterium with bile acid 7α-dehydroxylating activity. Int J Syst Evol Microbiol 51, 39-44.
9. Love, D. N., Johnson, J. L., Jones, R. F., Bailey, M. & Calverley, A. (1986). Bacteroides tectum sp. nov. and characteristics of other nonpigmented Bacteroides isolates from soft-tissue infections from cats and dogs. Int J Syst Bacteriol 36, 123-128.
10. Mitsuoka, T., Morishita, Y., Terada, A. & Yamamoto, S. (1969). A simple method ("plate-in-bottle method") for the cultivation of fastidious anaerobes. Jpn J Microbiol 13, 383-385.
11. Saito, H. & Miura, K. (1963). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619-629.
12. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
13. Shah, H. N. & Collins, M. D. (1980). Fatty acid and isoprenoid quinone composition in the classification of Bacteroides melaninogenicus, and related taxa. J Appl Bacteriol 48, 75-87.
14. Shah, H. N. & Collins, M. D. (1983). Genus Bacteroides. A chemotaxonomical perspective. J Appl Bacteriol 55, 403-416.
15. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
16. Suau, A., Bonnet, R., Sutren, M., Godon, J.-J., Gibson, G. R., Collins, M. D. & Doré, J. (1999). Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Microbiol 65, 4799-4807.
17. Thompson, J. D., Gibson, T. J., Plewniak F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.