Proteome profile of zebrafish caudal fin based on one-dimensional gel electrophoresis LCMS/MS and two-dimensional gel electrophoresis MALDI MS/MS analysis

Journal of Separation Science

Volumn 34, Issue 2, 2011, Pages 225-232

  Singh, Sachin K ^a   Meena Lakshmi, Mula G ^a   Saxena, Sandeep ^a   Swamy, Cherukuvada V Brahmendra ^a   Idris, Mohammed M ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

Caudal fin; Fin proteome; Network pathway; Zebrafish

Indexed keywords

ACTIN CYTOSKELETON; ANTIGEN PROCESSING; APOPTOSIS; BIOLOGICAL ACTIVITIES; CAUDAL FINS; DANIO RERIO; DATA SETS; DISEASE PROCESS; FOCAL ADHESIONS; GEL ELECTROPHORESIS; LC-MS/MS; MALDI MS/MS; METABOLIC PROCESS; MITOGEN ACTIVATED PROTEIN KINASE; MS/MS ANALYSIS; NATIVE STATE; NETWORK PATHWAY; PROTEASOMES; PROTEOMES; TWO-DIMENSIONAL GEL ELECTROPHORESIS; VERTEBRATE MODEL; ZEBRAFISH;

CELL DEATH; FINS (HEAT EXCHANGE); GELS; PROTEINS; SIGNALING; TISSUE; TWO DIMENSIONAL;

ELECTROPHORESIS;

MITOGEN ACTIVATED PROTEIN KINASE; PROTEOME;

ANIMAL TISSUE; ANTIGEN PRESENTATION; APOPTOSIS; ARTICLE; CATABOLISM; CATALYSIS; CELL MATURATION; CONTROLLED STUDY; CYTOSKELETON; FEMALE; FIN (ORGAN); FOCAL ADHESION; GEL ELECTROPHORESIS; LIQUID CHROMATOGRAPHY; MALE; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; METABOLISM; NONHUMAN; ONE DIMENSIONAL GEL ELECTROPHORESIS; PEPTIDE MAPPING; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEOMICS; SIGNAL TRANSDUCTION; TANDEM MASS SPECTROMETRY; TISSUE SPECIFICITY; TWO DIMENSIONAL GEL ELECTROPHORESIS; ZEBRA FISH;

ANIMAL FINS; ANIMALS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FEMALE; FISH PROTEINS; MALE; MOLECULAR SEQUENCE DATA; PROTEOME; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TANDEM MASS SPECTROMETRY; ZEBRAFISH;

ANIMALIA; DANIO RERIO; VERTEBRATA;

EID: 78751655672     PISSN: 16159306     EISSN: 16159314     Source Type: Journal    
DOI: 10.1002/jssc.201000626     Document Type: Article

References (28)

1. Haas, H. J., Dev. Biol. 1962, 5, 1-34.
2. Nabrit, S. M., Biol. Bull. 1929, 56, 235-266.
3. Santamaria, J. A., Becerra, J., J. Anat. 1991, 176, 9-21.
4. Santamaría, J. A., Marí-Beffa, M., Becerra, J., Regeneración de aletas de teleósteos: Interacción célulasmatriz extracelular. Progresos en Biologia Cellular, Becerra Ratia, J., Pérez-Figares, J. M., and, Fernández-Llebrez P., (Eds), Universidad de Málaga 1992.
5. Dahm, R., Geisler, R., Mar. Biotechnol. (N Y) 2006, 8, 329-345.
6. Mari-Beffa, M., Mateos, I., Palmqvist, P., Becerra, J., Int. J. Dev. Biol. 1996, 179S-180S.
7. Renn, K., Winkler, C., Schartl, M., Fischer, R., Protoplasma 2006, 229, 209-214.
8. Zhang, J., Wagh, P., Guay, D., Sanchez-Pulido, L., Padhi, B. K., Korzh, V., Andrade-Navarro, M. A., Akimenko, M. A., Nature 2010, 466, 234-237.
9. Iovine, M. K., Johnson, S. L., Genetics 2000, 155, 1321-1329.
10. Jordan, D. S., A Guide to the Study of Fishes. Henry Holt and Co, New York 1905.
11. Whitehead, G. G., Makino, S., Lien, C.-L., Keating, M. T., Science 2005, 310, 1957-1960.
12. Quint, E., Smith, A., Avaron, F., Laforest, L., Miles, J., Gaffield, W., Akimenko, M. A., Proc. Natl. Acad. Sci. USA 2002, 99, 8713-8718.
13. Wills, A. A., Kidd A. R. III, Lepilina, A., Poss, K. D., Development 2008, 135, 3063-3070.
14. Lee, Y., Hami, D., Val, S. D., Kagermeier-Schenk, B., Wills, A. A., Black, B., Weidinger, G., Poss, K. D., Development 2009, 331, 270-280.
15. Singh, S. K., Rakesh, K. S., Ramamoorthy, K., Pardha Saradhi, A. V., Idris, M. M., J. Proeomics Bioinform. 2010a, 3, 135-142.
16. Singh, S. K., Sundaram, C. S., Shanbhag, S., Idris, M. M., Zebrafish 2010b, 7, 169-177.
17. Link, V., Shevchenko, A., Heisenberg, C. P., BMC Dev. Biol. 2006, 13, 6:1.
18. Tay, T. L., Lin, Q., Seow, T. K., Tan, K. H., Hew, C. L., Gong, Z., Proteomics 2006, 6, 3176-3188.
19. Lucitt, M. B., Price, T. S., Pizarro, A., Wu, W., Yocum, A. K., Seiler, C., Pack, M. A., Blair, I. A., Fitzgerald, G. A., Grosser, T., Mol. Cell. Proteomics 2009, 7, 981-994.
20. Lin, Y., Chen, Y., Yang, X., Xu, D., Liang, S., Anal. Biochem. 2009, 394, 177-185.
21. Wang, N., Mackenzie, L., De Souza, A. G., Zhong, H., Goss, G., Li, L., J. Proteome Res. 2007, 6, 263-272.
22. De Souza, A. G., Maccormack, T. J., Wang, N., Li, L., Goss, G. G., Zebrafish 2009, 6, 229-238.
23. Abramsson, A., Westman-Brinkmalm, A., Pannee, J., Gustavsson, M., von Otter, M., Blennow, K., Brinkmalm, G., Kettunen, P., Zetterberg, H., Zebrafish 2010, 7, 161-168.
24. Westerfield M., The Zebrafish Book: A Guide for the Laboratory Use of Zebrafish (Brachydanio rerio), University of Oregon Press, Eugene, OR 1995.
25. Schaffner, W., Weissmann, C., Anal. Biochem. 1973, 56, 502-514.
26. Harris, M. A., Clark, J., Ireland, A., Lomax, J., Ashburner, M., Foulger, R., Eilbeck, K., Lewis, S., Marshall, B., Mungall, C., Richter, J., Rubin, G. M., Blake, J. A., Bult, C., Dolan, M., Drabkin, H., Eppig, J. T., Hill, D. P., Ni, L., Ringwald, M., Balakrishnan, R., Cherry, J. M., Christie, K. R., Costanzo, M. C., Dwight, S. S., Engel, S., Fisk, D. G., Hirschman, J. E., Hong, E. L., Nash, R. S., Sethuraman, A., Theesfeld, C. L., Botstein, D., Dolinski, K., Feierbach, B., Berardini, T., Mundodi, S., Rhee, S. Y., Apweiler, R., Barrell, D., Camon, E., Dimmer, E., Lee, V., Chisholm, R., Gaudet, P., Kibbe, W., Kishore, R., Schwarz, E. M., Sternberg, P., Gwinn, M., Hannick, L., Wortman, J., Berriman, M., Wood, V., de la Cruz, N., Tonellato, P., Jaiswal, P., Seigfried, T., White, R., Nucl. Acids Res. 2004, 32, 258-261.
27. Draghici, S., Khatri, P., Tarca, A. L., Amin, K., Done, A., Voichita, C., Georgescu, C., Romero, R., Genome Res. 2007, 17, 1537-1545.
28. Tarca, A. L., Draghici, S., Khatri, P., Hassan, S. S., Mittal, P., Kim, J. S., Kim, C. J., Kusanovic, J. P., Romero, R., Bioinformatics 2009, 25, 75-82.