The narrow endemic Norwegian peat moss Sphagnum troendelagicum originated before the last glacial maximum

Heredity

Volumn 106, Issue 2, 2011, Pages 370-382

  Stenoien H K ^a   Shaw, A J ^b   Stengrundet, K ^a   Flatberg, K I ^a  

^a NORWEGIAN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Norway)

^b DUKE UNIVERSITY   (United States)

Author keywords

Allopolyploid; Bayesian analysis; hybridization; ice age; phylogeography; population genetics

Indexed keywords

MICROSATELLITE DNA;

BAYESIAN ANALYSIS; CHLOROPLAST; COMPUTER SIMULATION; ENDEMIC SPECIES; GENETIC ANALYSIS; GENETIC MARKER; GENOME; HOLOCENE; HYBRID; HYBRIDIZATION; LAST GLACIAL MAXIMUM; MOSS; PALEOENVIRONMENT; PEAT; PHYLOGEOGRAPHY; POLYPLOIDY; POPULATION GENETICS; RARE SPECIES; RECOMBINATION; SEXUAL REPRODUCTION;

ARTICLE; BAYES THEOREM; CHLOROPLAST; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; GENOTYPE; HAPLOTYPE; MOLECULAR EVOLUTION; NORWAY; PHYLOGEOGRAPHY; SPECIES DIFFERENTIATION; SPHAGNOPSIDA;

BAYES THEOREM; CHLOROPLASTS; EVOLUTION, MOLECULAR; GENETIC MARKERS; GENETIC SPECIATION; GENOTYPE; HAPLOTYPES; MICROSATELLITE REPEATS; NORWAY; PHYLOGEOGRAPHY; POLYMORPHISM, GENETIC; SPHAGNOPSIDA;

SCANDINAVIA;

BRYOPHYTA; SPHAGNUM TROENDELAGICUM;

EID: 78751652500     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2010.96     Document Type: Article

References (69)

1. Abbott RJ, Lowe AJ (2004). Origins, establishment and evolution of new polyploidy species: Senecio cambrensis and S. eboracensis in the British Isles. Biol J Linn Soc 82: 467-474.
2. Adams KL (2007). Evolution of duplicate gene expression in polyploid and hybrid plants. J Hered 98: 136-141.
3. Beaumont MA (2008). Joint determination of topology, divergence time, and immigration in population trees. In: Matsura S, Forster P, Renfrew C (eds). Simulations, Genetics and Human Prehistory. McDonald Institute for Archaeological Research: Cambridge, pp 135-154.
4. Beaumont MA, Zhang W, Balding DJ (2002). Approximate Bayesian computation in population genetics. Genetics 162: 2025-2035.
5. Boatman DJ, Lark PM (1971). Inorganic nutrition of the protonemata of Sphagnum papillosum Lindb., S. magellanicum Brid. & S. cuspidatum Ehrh. New Phytol 70: 1053-1059.
6. Castric V, Bechsgaard J, Schierup M, Vekemans X (2008). Repeated adaptive introgression at a gene under multiallelic balancing selection. PLoS Genet 4: e1000168.
7. Chen ZJ (2007). Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids. Annu Rev Plant Biol 58: 377-406.
8. Cornuet J-M, Santos F, Beaumont MA, Robert CP, Marin J-M, Balding DJ et al. (2008). Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation. Bioinformatics 24: 2713-2719.
9. Cronberg N (1996). Isozyme evidence of relationships within Sphagnum sect. Acutifolia (Sphagnaceae, Bryophyta). Plant Syst Evol 203: 41-64.
10. Daniels RE, Eddy A (1985). Handbook of European Sphagna. Institute of Terrestrial Ecology: Huntington.
11. Excoffier L, Laval G, Scheider S (2005). Arlequin ver 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50.
12. Excoffier L, Smouse P, Quattro J (1992). Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
13. Evanno G, Regnaut S, Gaudet J (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: 2611-2620.
14. Fagundes NJR, Ray N, Beaumont MA, Neuenschwander S, Salzano F, Nonatto SL et al. (2007). Statistical evaluation of alternative models of human evolution. Proc Natl Acad Sci USA 104: 17614-17619.
15. Flatberg KI (1988). Sphagnum troendelagicum sp. nov. (sect. Cuspidata). Lindbergia 14: 22-39.
16. Flatberg KI, Blom HH, Hassel K, Kland RH (2006a). Moser Anthocerophyta, Marchatiophyta, Bryophyta. In: Ka°la°s JA, Viken A ° , Bakken T (eds). Norwegian Red list, Artsdatabanken: Trondheim. pp 416.
17. Flatberg KI, Thingsgaard K, Sa°stad SM (2006b). Interploidal gene flow and introgression in bryophytes: Sphagnum girgensohnii S.russowii, a case of spontaneous neotriploidy. J Bryol 28: 27-37.
18. Fritsch R (1991). Index to bryophyte chromosome counts. Bryophytorum Bibliotheca 40: 1-352.
19. Gaeta RT, Chris Pires J (2009). Homoeologous recombination in allopolyploids: the polyploid ratchet. New Phytol 186: 18-28.
20. Garza JC, Williamson E. (2001). Detecting the reduction in population size using data from microsatellite DNA. Mol Ecol 10: 305-318.
21. Hey J, Nielsen R (2004). Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167: 747-760.
22. Hubisz MJ, Falush D, Stephens M, Pritchard JK (2009). Inferring weak population structure with the assistance of sample group information. Mol Ecol Res 9: 1322-1332.
23. Librado P, Rozas J (2009). DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
24. Longton RE (1997). Reproductive biology and life-history strategies. In: Longton RE (ed). Advances in Bryology, Population Studies ol. 6. Gebrüder Borntraeger Verlagsbuchhandlung: Berlin and Stuttgart, pp 65-101.
25. Lundemo S, Falahati-Anbaran M, Steníen HK (2009). Seed banks cause elevated generation times and effective population sizes of Arabidopsis thaliana in northern Europe. Mol Ecol 18: 2798-2811.
26. Mallet J (2007). Hybrid speciation. Nature 466: 279-283.
27. Martin NH, Bouck AC, Arnold ML (2006). Detecting adaptive trait introgression between Iris fulva and I. brevicaulis in highly selective field conditions. Genetics 172: 2481-2489.
28. McConnell R, Middlemist S, Scala C, Strassmann JE, Queller DC (2007). An unusually low microsatellite mutation rate in Dictyostelium discoideum, an organism with unusually abundant microsatellites. Genetics 177: 1499-1507.
29. Michalakis Y, Excoffier L (1996). A generic estimation of population subdivision using distances between alleles with special reference to microsatellite loci. Genetics 142: 1061-1064.
30. Miller N, Estoup A, Toepfer S, Bourguet D, Lapchin L, Derridj S et al. (2005). Multiple transatlantic introductions of the western corn rootworm. Science 310: 992.
31. Natcheva R, Cronberg N (2007). Maternal transmission of cytoplasmic DNA in interspecific hybrids of peat mosses, Sphagnum (Bryophyta). J Evol Biol 20: 1613-1616.
32. Nei M (1987). Molecular Evolutionary Genetics. Columbia University Press: New York.
33. Nielsen R, Wakeley J (2001). Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 158: 885-896.
34. Ohta T, Kimura M (1973). A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genet Res 22: 201-204.
35. Pacak A, Szweykowaska-Kulinska Z (2000). Molecular data concerning alloploid character and the origin of the chloroplast and mitochondrial genomes in the liverwort species Pellia borealis. J Plant Biotechnol 2: 101-108.
36. Pascual M, Chapuis MP, Mestres F, Balanyà J, Huey RB, Gilchrist GW et al. (2007). Introduction history of Drosophila subobscura in the New World: a microsatellite-based survey using ABC methods. Mol Ecol 16: 3069-3083.
37. Pérez T, Albornoz J, Domínguez A (1998). An evaluation of RAPD fragment reproducibility and nature. Mol Ecol 7: 1347-1357.
38. Pritchard JK, Stephens M, Donnelly P (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
39. Rabouam C, Comes AM, Bretagnolle VV, Humbert JF, Periquet G, Bigot Y (1999). Features of DNA fragments obtained by random amplified polymorphic DNA (RAPD) assays. Mol Ecol 8: 493-503.
40. Ramos JR, Telles MP, Diniz-Filho JA, Soares TN, Melo DB, Oliveira G (2008). Optimizing reproducibility evaluation for random amplified polymorphic DNA markers. Genet Mol Res 7: 1384-1391.
41. Rannala B, Mountain JL (1997). Detecting immigration by using multilocus genotypes. Proc Natl Acad Sci USA 94: 9197-9201.
42. Rieseberg LH (1997). Hybrid origins of plant species. Annu Rev Ecol Syst 28: 359-389.
43. Rieseberg LH, Willis JH (2007). Plant speciation. Science 317: 910-914.
44. Shaw AJ (2009). Bryophyte species and speciation. In: Goffinet B, Shaw AJ (eds). Bryophyte Biology. Cambridge University Press: Cambridge.
45. Shaw AJ, Andrus RE, Shaw B (2008a). Sphagnum beringiense sp. nov. (Bryophyta) from arctic Alaska, based on morphological and molecular data. Syst Bot 33: 469-477.
46. Shaw AJ, Cao T, Wang L-S, Flatberg KI, Flatberg B, Shaw B et al. (2008b). Genetic variation in three Chinese peat mosses (Sphagnum) based on microsatellite markers, with primer information and analysis of ascertainment bias. Bryologist 111: 271-281.
47. Shaw AJ, Cox CJ, Boles S (2003). Polarity of peatmoss (Sphagnum) evolution: who says mosses have no roots? Am J Bot 90: 1777-1787.
48. Slatkin M (1994). Linkage disequilibrium in growing and stable populations. Genetics 137: 331-336.
49. Solem T (1986). Age, origin and development of blanket mires in Sr-Trndelag, Central Norway. Boreas 15: 101-115.
50. Soltis DE, Soltis PS (1993). Molecular data faciliate a reevaluation of traditional tenets of polyploid evolution. Crit Rev Plant Sci 12: 243-273.
51. Soltis DE, Soltis PS (1999). Polyploidy: recurrent formation and genome evolution. Trends Ecol Evol 14: 348-352.
52. Soltis DE, Soltis PS, Pires JC, Kovarik A, Tate J, Mavrodiev E (2004). Recent and recurrent polyploidy in Tragopogon (Asteraceae): cytogenetic, genomic and genetic comparisons. Biol J Linn Soc 82: 485-501.
53. Soltis DE, Soltis PS, Tate JA (2003). Advances in the study of polyploidy since Plant speciation. New Phytol 161: 173-191.
54. Soltis PS, Soltis DE (2009). The role of hybridization in plant speciation. Annu Rev Plant Biol 60: 561-588.
55. Steníen HK, Fenster CB, Tonteri A, Savolainen O (2005). Genetic variability in natural populations of Arabidopsis thaliana in northern Europe. Mol Ecol 14: 137-148.
56. Steníen HK, Flatberg KI (2000). Genetic variability in the rare Norwegian peat moss Sphagnum troendelagicum. Bryologist 103: 794-801.
57. Steníen HK, Sa°stad SM (1999). Genetic structure in three haploid peat mosses (Sphagnum). Heredity 82: 391-400.
58. Steníen HK, Sa°stad SM (2001). Genetic variability in bryophytes: does mating system really matter? J Bryol 23: 313-319.
59. Sundberg S (2005). Larger capsules enhance short-range spore dispersal in Sphagnum, but what happens further away? Oikos 108: 115-124.
60. Szövényi P, Terracciano S, Ricca M, Shaw AJ (2008). Recent divergence, intercontinental dispersal and shared polymorphisms are shaping the genetic structure of amphi-Atlantic peatmoss populations. Mol Ecol 17: 5364-5377.
61. Sa°stad SM (2004). Patterns and mechanisms of polyploid speciation in bryophytes. Regnum Veget 142: 317-333.
62. Sa°stad SM, Steníen HK, Flatberg KI, Bakken S (2001). The narrow endemic Sphagnum troendelagicum is an allopolyploid derivative of the widespread S. balticum and S. tenellum. Syst Bot 26: 66-74.
63. Udupa SM, Baum M (2001). High mutation rate and mutational bias at (TAA) (n) microsatellite loci in chickpea (Cicer arietinum L.). Mol Genet Genomics 265: 1097-1103.
64. Van Zanten BO (1978). Experimental studies on trans-oceanic long-range dispersal of moss spores in the Southern Hemisphere. J Hattori Bot Lab 44: 455-582.
65. Weir BS, Cockerham CC (1984). Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
66. Whithney KD, Randell RA, Rieseberg LH (2006). Adaptive introgression of herbivore resistance traits in the weedy sunflower Helianthus annuus. Am Nat 167: 794-807.
67. Williams JG, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18: 6531-6535.
68. Wolfe KH, Li W-H, Sharp PM (1987). Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci USA 84: 9054-9058.
69. Wood TE, Takebayashi N, Barker MS, Mayrose I, Greenspoon PB, Rieseberg LH (2009). The frequency of polyploid speciation in vascular plants. Proc Natl Acad Sci USA 106: 13875-13879.