메뉴 건너뛰기




Volumn 54, Issue 1, 2011, Pages 34-38

Comparison of alternative extraction methods for secretome profiling in human hepatocellular carcinoma cells

Author keywords

dialysis; hepatocellular carcinoma; LC MS MS; precipitation; protein extraction; secretome; ultrafiltration

Indexed keywords


EID: 78751651074     PISSN: 16747305     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11427-010-4122-1     Document Type: Article
Times cited : (10)

References (29)
  • 1
    • 0037452997 scopus 로고    scopus 로고
    • Large-scale delineation of secreted protein biomarkers overexpressed in cancer tissue and serum
    • Welsh J B, Sapinoso L M, Kern S G, et al. Large-scale delineation of secreted protein biomarkers overexpressed in cancer tissue and serum. Proc Natl Acad Sci USA, 2003, 100: 3410-3415.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 3410-3415
    • Welsh, J.B.1    Sapinoso, L.M.2    Kern, S.G.3
  • 2
    • 33845193926 scopus 로고    scopus 로고
    • Mass spectrometric proteomics profiles of in vivo tumor secretomes: Capillary ultrafiltration sampling of regressive tumor masses
    • Huang C M, Ananthaswamy H N, Barnes S, et al. Mass spectrometric proteomics profiles of in vivo tumor secretomes: Capillary ultrafiltration sampling of regressive tumor masses. Proteomics, 2006, 6: 6107-6116.
    • (2006) Proteomics , vol.6 , pp. 6107-6116
    • Huang, C.M.1    Ananthaswamy, H.N.2    Barnes, S.3
  • 3
    • 34548182124 scopus 로고    scopus 로고
    • Identification of differentially secreted biomarkers using LC-MS/MS in isogenic cell lines representing a progression of breast cancer
    • Mbeunkui F, Metge B J, Shevde L A, et al. Identification of differentially secreted biomarkers using LC-MS/MS in isogenic cell lines representing a progression of breast cancer. J Proteome Res, 2007, 6: 2993-3002.
    • (2007) J Proteome Res , vol.6 , pp. 2993-3002
    • Mbeunkui, F.1    Metge, B.J.2    Shevde, L.A.3
  • 4
    • 0037391756 scopus 로고    scopus 로고
    • Predicting hepatitis B virus-positive metastatic hepatocellular carcinomas using gene expression profiling and supervised machine learning
    • Ye Q H, Qin L X, Forgues M, et al. Predicting hepatitis B virus-positive metastatic hepatocellular carcinomas using gene expression profiling and supervised machine learning. Nat Med, 2003, 9: 416-423.
    • (2003) Nat Med , vol.9 , pp. 416-423
    • Ye, Q.H.1    Qin, L.X.2    Forgues, M.3
  • 5
    • 33751252276 scopus 로고    scopus 로고
    • Cancer metastasis: Building a framework
    • Gupta G P, Massagué J. Cancer metastasis: Building a framework. Cell, 2006, 127: 679-695.
    • (2006) Cell , vol.127 , pp. 679-695
    • Gupta, G.P.1    Massagué, J.2
  • 6
    • 11144356989 scopus 로고    scopus 로고
    • A decade's studies on metastasis of hepatocellular carcinoma
    • Tang Z Y, Ye S L, Liu Y K, et al. A decade's studies on metastasis of hepatocellular carcinoma. J Cancer Res Clin Oncol, 2004, 130: 187-196.
    • (2004) J Cancer Res Clin Oncol , vol.130 , pp. 187-196
    • Tang, Z.Y.1    Ye, S.L.2    Liu, Y.K.3
  • 7
    • 48149094776 scopus 로고    scopus 로고
    • A catalogue of proteins released by colorectal cancer cells in vitro as an alternative source for biomarker discovery
    • Diehl H C, Stuhler K, Volmer M W, et al. A catalogue of proteins released by colorectal cancer cells in vitro as an alternative source for biomarker discovery. Proteomics Clin Appl, 2007, 1: 47-61.
    • (2007) Proteomics Clin Appl , vol.1 , pp. 47-61
    • Diehl, H.C.1    Stuhler, K.2    Volmer, M.W.3
  • 8
    • 33750137036 scopus 로고    scopus 로고
    • Improved mass spectrometric proteomic profiling of the secretome of rat vascular endothelial cells
    • Pellitteri-Hahn M C, Warren M C, Didier D N, et al. Improved mass spectrometric proteomic profiling of the secretome of rat vascular endothelial cells. J Proteome Res, 2006, 5: 2861-2864.
    • (2006) J Proteome Res , vol.5 , pp. 2861-2864
    • Pellitteri-Hahn, M.C.1    Warren, M.C.2    Didier, D.N.3
  • 9
    • 34247265006 scopus 로고    scopus 로고
    • Extracellular proteome of human hepatoma cell, HepG2 analyzed using two-dimensional liquid chromatography coupled with tandem mass spectrometry
    • Yamashita R, Fujiwara Y, Ikari K, et al. Extracellular proteome of human hepatoma cell, HepG2 analyzed using two-dimensional liquid chromatography coupled with tandem mass spectrometry. Mol Cell Biochem, 2007, 298: 83-92.
    • (2007) Mol Cell Biochem , vol.298 , pp. 83-92
    • Yamashita, R.1    Fujiwara, Y.2    Ikari, K.3
  • 10
    • 23144465869 scopus 로고    scopus 로고
    • A novel technique to specifically analyze the secretome of cells and tissues
    • Zwickl H, Traxler E, Staettner S, et al. A novel technique to specifically analyze the secretome of cells and tissues. Electrophoresis, 2005, 26: 2779-2785.
    • (2005) Electrophoresis , vol.26 , pp. 2779-2785
    • Zwickl, H.1    Traxler, E.2    Staettner, S.3
  • 11
    • 17844401762 scopus 로고    scopus 로고
    • Comparative proteome analysis of secretory proteins from pathogenic and nonpathogenic Listeria species
    • Trost M, Wehmhöner D D, Kärst U, et al. Comparative proteome analysis of secretory proteins from pathogenic and nonpathogenic Listeria species. Proteomics, 2005, 5: 1544-1557.
    • (2005) Proteomics , vol.5 , pp. 1544-1557
    • Trost, M.1    Wehmhöner, D.D.2    Kärst, U.3
  • 12
    • 33847396262 scopus 로고    scopus 로고
    • Identification of secreted proteins during skeletal muscle development
    • Chan X C, McDermott J C, Siu K W. Identification of secreted proteins during skeletal muscle development. J Proteome Res, 2007, 6: 698-710.
    • (2007) J Proteome Res , vol.6 , pp. 698-710
    • Chan, X.C.1    McDermott, J.C.2    Siu, K.W.3
  • 13
    • 33947357719 scopus 로고    scopus 로고
    • Discovery of candidate tumor markers for prostate cancer via proteomic analysis of cell culture-conditioned medium
    • Sardana G, Marshall J, Diamandis E P. Discovery of candidate tumor markers for prostate cancer via proteomic analysis of cell culture-conditioned medium. Clin Chem, 2007, 53: 429-437.
    • (2007) Clin Chem , vol.53 , pp. 429-437
    • Sardana, G.1    Marshall, J.2    Diamandis, E.P.3
  • 14
    • 33947602400 scopus 로고    scopus 로고
    • Cathepsin D is secreted from M-BE cells: Its potential role as a biomarker of lung cancer
    • Lou X M, Xiao T, Zhao K, et al. Cathepsin D is secreted from M-BE cells: Its potential role as a biomarker of lung cancer. J Proteome Res, 2007, 6: 1083-1092.
    • (2007) J Proteome Res , vol.6 , pp. 1083-1092
    • Lou, X.M.1    Xiao, T.2    Zhao, K.3
  • 15
    • 38949132540 scopus 로고    scopus 로고
    • Identification of collapsin response mediator protein-2 as a potential marker of colorectal carcinoma by comparative analysis of cancer cell secretomes
    • Wu C C, Cheng H C, Chen S J, et al. Identification of collapsin response mediator protein-2 as a potential marker of colorectal carcinoma by comparative analysis of cancer cell secretomes. Proteomics, 2008, 8: 316-332.
    • (2008) Proteomics , vol.8 , pp. 316-332
    • Wu, C.C.1    Cheng, H.C.2    Chen, S.J.3
  • 16
    • 0037250193 scopus 로고    scopus 로고
    • Establishment of a hepatocellular carcinoma cell line with unique metastatic characteristics through in vivo selection and screening for metastasis-related genes through cDNA microarray
    • Li Y, Tang Z Y, Ye S L, et al. Establishment of a hepatocellular carcinoma cell line with unique metastatic characteristics through in vivo selection and screening for metastasis-related genes through cDNA microarray. J Cancer Res Clin Oncol, 2003, 129: 43-51.
    • (2003) J Cancer Res Clin Oncol , vol.129 , pp. 43-51
    • Li, Y.1    Tang, Z.Y.2    Ye, S.L.3
  • 17
    • 33645753484 scopus 로고    scopus 로고
    • Secretory protein enrichment and analysis: An optimized approach applied on cancer cell lines using 2D LC-MS/MS
    • Mbeunkui F, Fodstad O, Pannell L K. Secretory protein enrichment and analysis: An optimized approach applied on cancer cell lines using 2D LC-MS/MS. J Proteome Res, 2006, 5: 899-906.
    • (2006) J Proteome Res , vol.5 , pp. 899-906
    • Mbeunkui, F.1    Fodstad, O.2    Pannell, L.K.3
  • 18
    • 34250303532 scopus 로고    scopus 로고
    • Toward a better analysis of secreted proteins: The example of the myeloid cells secretome
    • Chevallet M, Diemer H, Dorssealer A V, et al. Toward a better analysis of secreted proteins: The example of the myeloid cells secretome. Proteomics, 2007, 7: 1757-1770.
    • (2007) Proteomics , vol.7 , pp. 1757-1770
    • Chevallet, M.1    Diemer, H.2    Dorssealer, A.V.3
  • 19
    • 33746215062 scopus 로고    scopus 로고
    • Subproteomic analysis of the cellular proteins associated with the 3′ untranslated region of the hepatitis C virus genome in human liver cells
    • Pan T T, Fang C, Gang Y Z, et al. Subproteomic analysis of the cellular proteins associated with the 3′ untranslated region of the hepatitis C virus genome in human liver cells. Biochem Biophys Res Commun, 2006, 347: 683.
    • (2006) Biochem Biophys Res Commun , vol.347 , pp. 683
    • Pan, T.T.1    Fang, C.2    Gang, Y.Z.3
  • 20
    • 33747172505 scopus 로고    scopus 로고
    • Application of the accurate mass and time tag approach to the proteome analysis of sub-cellular fractions obtained from rhodobacter sphaeroides 2.4.1. aerobic and photosynthetic cell cultures
    • Callister S J, Dominguez M A, Nicora C D, et al. Application of the accurate mass and time tag approach to the proteome analysis of sub-cellular fractions obtained from rhodobacter sphaeroides 2. 4. 1. aerobic and photosynthetic cell cultures. J Proteome Res, 2006, 5: 1940-1947.
    • (2006) J Proteome Res , vol.5 , pp. 1940-1947
    • Callister, S.J.1    Dominguez, M.A.2    Nicora, C.D.3
  • 21
    • 34547143630 scopus 로고    scopus 로고
    • Analysis of human liver proteome using replicate shotgun strategy
    • Chen M, Ying W T, Song Y P, et al. Analysis of human liver proteome using replicate shotgun strategy. Proteomics, 2007, 7: 2479.
    • (2007) Proteomics , vol.7 , pp. 2479
    • Chen, M.1    Ying, W.T.2    Song, Y.P.3
  • 22
    • 3042692704 scopus 로고    scopus 로고
    • Feature-based prediction of non-classical and leaderless protein secretion
    • Bendtsen J D, Jensen L J, Blom N, et al. Feature-based prediction of non-classical and leaderless protein secretion. Protein Eng Des Sel, 2004, 17: 349-356.
    • (2004) Protein Eng Des Sel , vol.17 , pp. 349-356
    • Bendtsen, J.D.1    Jensen, L.J.2    Blom, N.3
  • 23
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden markov model: Application to complete genomes
    • Krogh A, Larsson B, Heijne G, et al. Predicting transmembrane protein topology with a hidden markov model: Application to complete genomes. J Mol Biol, 2001, 305: 567-580.
    • (2001) J Mol Biol , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Heijne, G.3
  • 24
    • 33751074671 scopus 로고    scopus 로고
    • Characterisation of organellar proteomes: A guide to subcellular proteomic fractionation and analysis
    • Ho E, Hayen A, Wilkins M R. Characterisation of organellar proteomes: A guide to subcellular proteomic fractionation and analysis. Proteomics, 2006, 6: 5746.
    • (2006) Proteomics , vol.6 , pp. 5746
    • Ho, E.1    Hayen, A.2    Wilkins, M.R.3
  • 25
    • 0034821694 scopus 로고    scopus 로고
    • A proteomic view on genomebased signal peptide predictions
    • Antelmann H, Tjalsma H, Voigt B, et al. A proteomic view on genomebased signal peptide predictions. Genome Res, 2001, 11: 1484-1502.
    • (2001) Genome Res , vol.11 , pp. 1484-1502
    • Antelmann, H.1    Tjalsma, H.2    Voigt, B.3
  • 26
    • 4644320152 scopus 로고    scopus 로고
    • Signal peptide prediction based on analysis of experimentally
    • Zhang Z, Henzel W J. Signal peptide prediction based on analysis of experimentally. Protein Sci, 2004, 13: 2819-2824.
    • (2004) Protein Sci , vol.13 , pp. 2819-2824
    • Zhang, Z.1    Henzel, W.J.2
  • 27
    • 61849115201 scopus 로고    scopus 로고
    • Identification of N-Glycosylation sites on secreted proteins of human hepatocellular carcinoma cells with a complementary proteomics approach
    • Cao J, Shen C, Wang H, et al. Identification of N-Glycosylation sites on secreted proteins of human hepatocellular carcinoma cells with a complementary proteomics approach. J Proteome Res, 2009, 8: 662-672.
    • (2009) J Proteome Res , vol.8 , pp. 662-672
    • Cao, J.1    Shen, C.2    Wang, H.3
  • 28
    • 70350465175 scopus 로고    scopus 로고
    • Zeolite LTL nanocrystal-driving high efficient enrichment of secretory proteins in human hepatocellular carcinoma cells
    • Cao J, Hu Y, Shen C, et al. Zeolite LTL nanocrystal-driving high efficient enrichment of secretory proteins in human hepatocellular carcinoma cells. Proteomics, 2009, 9: 4881-4888.
    • (2009) Proteomics , vol.9 , pp. 4881-4888
    • Cao, J.1    Hu, Y.2    Shen, C.3
  • 29
    • 13444269483 scopus 로고    scopus 로고
    • SPD: A web-based secreted protein database
    • Chen Y J, Zhang Y, Yin Y, et al. SPD: A web-based secreted protein database. Nucleic Acids Res, 2005, 33: 169-173.
    • (2005) Nucleic Acids Res , vol.33 , pp. 169-173
    • Chen, Y.J.1    Zhang, Y.2    Yin, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.