A new taxon in the Infundibulicybe gibba complex (Basidiomycota, Agaricales, Tricholomataceae) from Sardinia (Italy)

Mycologia

Volumn 103, Issue 1, 2011, Pages 203-208

  Vizzini, Alfredo ^a   Contu, Marco ^b   Musumeci, Enzo ^b   Ercole, Enrico ^a  

^a UNIVERSITY OF TURIN   (Italy)

^b NONE   (Switzerland)

Author keywords

Agaricomycetes; Clitocybe gibba; Infundibulicybe catinus; ITS phylogeny; Taxonomy

Indexed keywords

FUNGAL DNA; RIBOSOMAL SPACER DNA;

FUNGUS; MICROMORPHOLOGY; NEW SPECIES; NEW TAXON; PHYLOGENETICS; PHYLOGENY; TAXONOMY;

AGARICALES; ARTICLE; BASIDIOMYCETES; CHEMISTRY; CLASSIFICATION; FUNGUS SPORE; GENETICS; ISOLATION AND PURIFICATION; ITALY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; ULTRASTRUCTURE;

AGARICALES; BASE SEQUENCE; BASIDIOMYCOTA; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; ITALY; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SPORES, FUNGAL;

ITALY; SARDINIA;

AGARICALES; BASIDIOMYCOTA; CLITOCYBE GIBBA; TRICHOLOMATACEAE;

EID: 78751552087     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/10-137     Document Type: Article

References (33)

1. Bellù F. 1996. Alcune specie mediterranee di recente identificazione con particolare riguardo al genere Clitocybe. Riv Micol 39(2):99-114.
2. Bigelow HE. 1985. North American species of Clitocybe II. Beih Nova Hedwig 81:281-471.
3. Binder M, Larsson K-H, Matheny PB, Hibbett DS. 2010. Amylocorticiales ord. nov. and Jaapiales ord. nov.: Early diverging clades of Agaricomycetidae were dominated by corticioid forms. Mycologia 102:865-880, doi: 10.3852/09-288
4. Bon M. 1997. Flore Mycologique d'Europe 4. Les Clitocybes, Omphales et ressemblants. Amiens: Doc Mycol, Mém Hors-Sèr, vol 4. p 1-181.
5. Clémençon H. 1984. Kompendium der Blätterpilze. Clitocybe. Z Mykol Beih 5:1-68.
6. Drummond AJ, Ashton B, Cheung M, Heled J, Kearse M, Moir R, Stones-Havas S, Thierer T, Wilson A. 2009. Geneious v4.8 (Available from http://www.geneious.com).
7. Felsenstein J. 1985. Confidence-limits on phylogenies-an approach using the bootstrap. Evolution 39:783-791, doi:10.2307/2408678
8. Flora of British Fungi Colour Identification Chart. 1969. Edinburgh: Royal Botanic Garden.
9. Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Mol Ecol 2(2):113-118, doi:10.1111/j.1365-294X.1993.tb00005.x
10. Gregory DC. 2007. The genus Clitocybe of California (master's thesis). San Francisco State Univ. 263 p.
11. Harmaja H. 1969. The genus Clitocybe (Agaricales) in Fennoscandia. Karstenia 10:5-119.
12. Harmaja H. 2003. Notes on Clitocybe s. lato (Agaricales). Ann Bot Fenn 40:213-218.
13. Horak E. 2005. Röhrlinge und Blätterpilze in Europa. München: Elsevier. 555 p.
14. Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755, doi:10.1093/bioinformatics/17.8.754
15. Huelsenbeck JP, Larget B, Miller RE, Ronquist F. 2002. Potential applications and pitfalls of Bayesian inference of phylogeny. Syst Biol 51:673-688, doi:10.1080/10635150290102366
16. Kühner R, Romagnesi H. 1953. Flore analytique des champignons supérieurs. Paris: Masson. 557 p.
17. Kuyper TW. 1995. Clitocybe. In: Bas C, Kuyper TW, Noordeloos ME, Vellinga EC, eds. Flora Agaricina Neerlandica. Vol. 3. Rotterdam: A.A. Balkema. p 42-62.
18. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948, doi:10.1093/bioinformatics/btm404
19. Matheny PB, Curtis JC, Hofstter V, Aime MC, Moncalvo JM, Ge ZW, Yang ZL, Slot JC, Ammirati JF, Baroni TJ, Bougher NL, Hughes KW, Lodge DJ, Kerrigan RW, Seidl MT, Aanen DK, DeNitis M, Daniele GM, Desjarden DE, Kropp BR, Norvell LL, Parker A, Vellinga EC, Vilgalys R, Hibbett DS. 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98:982-995, doi:10.3852/mycologia.98.6.982
20. Moreau PA. 2009. Révision des Tricholomataceae clitocyboïdes et omphaloïdes. In: Maire J-C, Moreau P-A, Robich G, eds. Compléments à la flore des champignons supérieurs du Maroc de G. Malençon et R. Bertault. Nice, France: Confédération Européenne de Mycologie Méditerranéenne. p 447-492.
21. Nei M, Kumar S. 2000. Molecular evolution and phylogenetics. New York: Oxford Univ Press. 333 p.
22. Posada D. 2008. jModeltest: phylogenetic model averaging. Mol Biol Evol 25:1253-1256, doi:10.1093/molbev/msn083
23. Raithelhuber JH. 1990. Die Gattung Clitocybe ss. lat. in den ABC-Staaten. Metrodiana 18(1-2):1-72.
24. Raithelhuber JH. 1997. Trichterlinge Mitteleuropas. Determinationkeys. Metrodiana 24(1-4):99-120.
25. Raithelhuber JH. 2004. Mitteleuropäische Trichterlinge. Gattungen Clitocybe, Pseudolyophyllum und Paralepista. Stuttgart: J.H. Raithelhuber Außenseiterverlag. 172 p.
26. Redhead SA, Lutzoni F, Moncalvo JM, Vilgalys R. 2002. Phylogeny of agarics: partial systematics solutions for core omphalinoid genera in the Agaricales (euagarics). Mycotaxon 83:19-57.
27. Roux P. 2006. Mille et un champignons. Edition Roux, Sainte-Sigolène. 1223 p.
28. Schwöbel H. 1984. Trichterlinge aus dem C. gibba-Formenkreis. Beitr Kenn Pilze Mittel 1:5-10.
29. Swofford DL. 2002. PAUP*: phylogenetic analyses using parsimony (*and other methods). Version 4.0b10. Sunderland, Massachusetts: Sinauer Associates.
30. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software. Version 4.0. Mol Biol Evol 24:1596-1599, doi:10.1093/molbev/msm092
31. Thiers B. 2010 [continuously updated]. Index Herbariorum: a global directory of public herbaria and associated staff. New York Botanical Garden's Virtual Herbarium. http://sweetgum.nybg.org/ih/
32. Vesterholt J. 2008. Infundibulicybe Harmaja. In: Knudsen H, Vesterholt J, eds. Funga Nordica. Copenhagen: Nordsvamp. p 310-312.
33. White TJ, Bruns TD, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Snisky JJ, White TJ, eds. PCR protocols. London: Academic Press. p 315-322.