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Volumn 39, Issue SUPPL. 1, 2011, Pages

Extending CATH: Increasing coverage of the protein structure universe and linking structure with function

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CATH VERSION 3.4; CLASSIFICATION ALGORITHM; INFORMATION PROCESSING; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN FOLDING; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; STRUCTURE ACTIVITY RELATION; WEB BROWSER;

EID: 78651338019     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq1001     Document Type: Article
Times cited : (120)

References (31)
  • 2
    • 58149187899 scopus 로고    scopus 로고
    • The CATH classification revisited-architectures reviewed and new ways to characterize structural divergence in superfamilies
    • Cuff, A.L., Sillitoe, I., Lewis, T., Redfern, O.C., Garratt, R., Thornton, J. and Orengo, C.A. (2009) The CATH classification revisited-architectures reviewed and new ways to characterize structural divergence in superfamilies. Nucleic Acids Res., 37, D310-D314.
    • (2009) Nucleic Acids Res. , vol.37
    • Cuff, A.L.1    Sillitoe, I.2    Lewis, T.3    Redfern, O.C.4    Garratt, R.5    Thornton, J.6    Orengo, C.A.7
  • 3
    • 34347393442 scopus 로고    scopus 로고
    • Structural genomics: Keeping up with expanding knowledge of the protein universe
    • Grabowski, M., Joachimiak, A., Otwinowski, Z. and Wladek, W. (2007) Structural genomics: keeping up with expanding knowledge of the protein universe. Curr. Opin. Struct. Biol., 17, 347-353.
    • (2007) Curr. Opin. Struct. Biol. , vol.17 , pp. 347-353
    • Grabowski, M.1    Joachimiak, A.2    Otwinowski, Z.3    Wladek, W.4
  • 5
    • 33846033844 scopus 로고    scopus 로고
    • The CATH domain structure database: New protocols and classification levels give a more comprehensive resource for exploring evolution
    • Greene, L.H., Lewis, T.E., Addou, S., Cuff, A., Dallman, T., Dibley, M., Redfern, O., Pearl, F., Nambudiry, R., Reid, A. et al. (2007) The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. Nucleic Acids Res., 35, D291-D297.
    • (2007) Nucleic Acids Res. , vol.35
    • Greene, L.H.1    Lewis, T.E.2    Addou, S.3    Cuff, A.4    Dallman, T.5    Dibley, M.6    Redfern, O.7    Pearl, F.8    Nambudiry R.Reid, A.9
  • 7
    • 18044397545 scopus 로고    scopus 로고
    • Progress of structural genomics initiatives: An analysis of solved target structures
    • Todd, A.E., Marsden, R.L., Thornton, J.M. and Orengo, C.A. (2005) Progress of structural genomics initiatives: an analysis of solved target structures. J. Mol. Biol., 348, 1235-1260.
    • (2005) J. Mol. Biol. , vol.348 , pp. 1235-1260
    • Todd, A.E.1    Marsden, R.L.2    Thornton, J.M.3    Orengo, C.A.4
  • 8
    • 31144467558 scopus 로고    scopus 로고
    • The impact of structural genomics: Expectations and outcomes
    • Chandonia, J.M. and Brenner, S.E. (2006) The impact of structural genomics: expectations and outcomes. Science, 311, 347-351.
    • (2006) Science , vol.311 , pp. 347-351
    • Chandonia, J.M.1    Brenner, S.E.2
  • 9
    • 77951217658 scopus 로고    scopus 로고
    • Current status of membrane protein structure classification
    • Neumann, S., Fuchs, A., Mulkidjanian, A. and Frishman, D. (2010) Current status of membrane protein structure classification. Proteins, 78, 1760-1773.
    • (2010) Proteins , Issue.78 , pp. 1760-1773
    • Neumann, S.1    Fuchs, A.2    Mulkidjanian, A.3    Frishman, D.4
  • 10
    • 36749082980 scopus 로고    scopus 로고
    • Impact of structures from the protein structure initiative
    • Hendrickson, W.A. (2007) Impact of structures from the protein structure initiative. Structure, 15, 1528-1529.
    • (2007) Structure , vol.15 , pp. 1528-1529
    • Hendrickson, W.A.1
  • 11
    • 0036005911 scopus 로고    scopus 로고
    • Gene3D: Structural assignment for whole genes and genomes using the CATH domain structure database
    • Buchan, D.W., Shepherd, A.J., Lee, D., Pearl, F.M., Rison, S.C., Thornton, J.M. and Orengo, C.A. (2002) Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database. Genome Res., 12, 503-514.
    • (2002) Genome Res. , vol.12 , pp. 503-514
    • Buchan, D.W.1    Shepherd, A.J.2    Lee, D.3    Pearl, F.M.4    Rison, S.C.5    Thornton, J.M.6    Orengo, C.A.7
  • 14
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa, M. and Goto, S. (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res., 28, 27-30.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 16
    • 36949008379 scopus 로고    scopus 로고
    • CATHEDRAL: A fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures
    • Redfern, O.C., Harrison, A., Dallman, T., Pearl, F.M. and Orengo, C.A. (2007) CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures. PLoS Comput. Biol., 3, e232.
    • (2007) PLoS Comput. Biol. , vol.3
    • Redfern, O.C.1    Harrison, A.2    Dallman, T.3    Pearl, F.M.4    Orengo, C.A.5
  • 17
    • 0024349252 scopus 로고
    • Protein structure alignment
    • Taylor, W.R. and Orengo, C.A. (1989) Protein structure alignment. J. Mol. Biol., 208, 1-22.
    • (1989) J. Mol. Biol. , vol.208 , pp. 1-22
    • Taylor, W.R.1    Orengo, C.A.2
  • 18
    • 0029948001 scopus 로고    scopus 로고
    • SSAP: Sequential structure alignment program for protein structure comparison
    • Orengo, C.A. and Taylor, W.R. (1996) SSAP: sequential structure alignment program for protein structure comparison. Methods Enzymol., 266, 617-635.
    • (1996) Methods Enzymol. , vol.266 , pp. 617-635
    • Orengo, C.A.1    Taylor, W.R.2
  • 19
  • 20
    • 84893482610 scopus 로고
    • A solution for the best rotation to relate two sets of vectors
    • Kabsch, W. (1976) A solution for the best rotation to relate two sets of vectors. Acta Crystallogr., 32, 922-923.
    • (1976) Acta Crystallogr. , vol.32 , pp. 922-923
    • Kabsch, W.1
  • 21
    • 0033963089 scopus 로고    scopus 로고
    • The ENZYME database in 2000
    • Bairoch, A. (2000) The ENZYME database in 2000. Nucleic Acids Res., 28, 304-305.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 304-305
    • Bairoch, A.1
  • 22
    • 75849153303 scopus 로고    scopus 로고
    • The universal protein resource (UniProt) in 2010
    • The UniProt Consortium
    • The UniProt Consortium. (2010) The Universal Protein Resource (UniProt) in 2010. Nucleic Acids Res., 38, D142-D148.
    • (2010) Nucleic Acids Res. , vol.38
  • 25
    • 65449148627 scopus 로고    scopus 로고
    • WSsas: A web service for the annotation of functional residues through structural homologues
    • Talavera, D., Laskowski, R.A. and Thornton, J.M. (2009) WSsas: a web service for the annotation of functional residues through structural homologues. Bioinformatics, 25, 1192-1194.
    • (2009) Bioinformatics , vol.25 , pp. 1192-1194
    • Talavera, D.1    Laskowski, R.A.2    Thornton, J.M.3
  • 26
    • 77950362058 scopus 로고    scopus 로고
    • GeMMA: Functional subfamily classification within superfamilies of predicted protein structural domains
    • Lee, D.A., Rentzch, R. and Orengo, C. (2009) GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains. Nucleic Acid Res., 38, 720-737.
    • (2009) Nucleic Acid Res. , vol.38 , pp. 720-737
    • Lee, D.A.1    Rentzch, R.2    Orengo, C.3
  • 29
    • 78651333362 scopus 로고    scopus 로고
    • (14 September, date last accessed)
    • Catalyst Web Framework. http://www.catalystframework.org/ (14 September 2010, date last accessed).
    • (2010) Catalyst Web Framework
  • 30
    • 78651321012 scopus 로고    scopus 로고
    • CATH webservices., (14 September 2010, date last accessed)
    • CATH webservices. http://api.cathdb.info/api/soap/dataservices/ wsdl (14 September 2010, date last accessed).
  • 31
    • 78651307468 scopus 로고    scopus 로고
    • Solr., (14 September 2010, date last accessed)
    • Solr. http://lucene.apache.org/solr/ (14 September 2010, date last accessed).


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