Cloning and characterization of Chlorobium tepidum ferritin

Biochimie

Volumn 93, Issue 2, 2011, Pages 352-360

  Yevenes, Alejandro E ^a,b   Marquez, Valeria ^b   Watt, Richard K ^c  

^a UNIVERSIDAD DE LA FRONTERA   (Chile)

^b UNIVERSIDAD DE TALCA   (Chile)

^c Brigham Young University   (United States)

Author keywords

Anaerobic; Ferritin; Ferroxidase center; Iron; Thermophilic

Indexed keywords

FERRITIN;

ARTICLE; CARBOXY TERMINAL SEQUENCE; CHLOROBIUM; MOLECULAR CLONING; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN PURIFICATION;

AMINO ACID SEQUENCE; ANAEROBIOSIS; BACTERIAL PROTEINS; BIOCATALYSIS; CHLOROBIUM; CLONING, MOLECULAR; FERRITINS; HUMANS; IRON; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OXYGEN; PROTEIN CONFORMATION; SEQUENCE ALIGNMENT;

CHLOROBACULUM TEPIDUM; ESCHERICHIA COLI;

EID: 78651289421     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2010.10.008     Document Type: Article

References (52)

1. K.A. McCall, and C.A. Fierke Probing determinants of the metal ion selectivity in carbonic anhydrase using mutagenesis Biochemistry 43 2004 3979 3986
2. A. Yevenes, F.D. Gonzalez-Nilo, and E. Cardemil Relevance of phenylalanine 216 in the affinity of Saccharomyces cerevisiae phosphoenolpyruvate carboxykinase for Mn(II) Protein J. 26 2007 135 141
3. A. Yevenes, R. Espinoza, J.A. Rivas-Pardo, J.M. Villarreal, F.D. Gonzalez-Nilo, and E. Cardemil Site-directed mutagenesis study of the microenvironment characteristics of Lys213 of Saccharomyces cerevisiae phosphoenolpyruvate carboxykinase Biochimie 88 2006 663 672
4. M. Uchida, M.T. Klem, M. Allen, P. Suci, M. Flenniken, E. Gillitzer, Z. Varpness, L.O. Liepold, M. Young, and T. Douglas Biological Containers: protein cages as Multifunctional Nanoplatforms Adv. Mater. 19 2007 1025 1042
5. A.S. Pereira, W. Small, C. Krebs, P. Tavares, D.E. Edmondson, E.C. Theil, and B.H. Huynh Direct spectroscopic and kinetic evidence for the involvement of a peroxodiferric intermediate during the ferroxidase reaction in fast ferritin mineralization Biochemistry 37 1998 9871 9876
6. G.S. Waldo, J. Ling, J. Sanders-Loehr, and E.C. Theil Formation of an Fe(III)-tyrosinate complex during biomineralization of H-subunit ferritin Science 259 1993 796 798
7. S. Sun, P. Arosio, S. Levi, and N.D. Chasteen Ferroxidase kinetics of human liver apoferritin, recombinant H-chain apoferritin, and site-directed mutants Biochemistry 32 1993 9362 9369
8. P. Arosio, R. Ingrassia, and P. Cavadini Ferritins: a family of molecules for iron storage, antioxidation and more Biochim. Biophys. Acta 1790 2009 589 599
9. G. Zhao, P. Ceci, A. Ilari, L. Giangiacomo, T.M. Laue, E. Chiancone, and N.D. Chasteen Iron and hydrogen peroxide detoxification properties of DNA-binding protein from starved cells. A ferritin-like DNA-binding protein of Escherichia coli J. Biol. Chem. 277 2002 27689 27696
10. A. Ilari, S. Stefanini, E. Chiancone, and D. Tsernoglou The dodecameric ferritin from Listeria innocua contains a novel intersubunit iron-binding site Nat. Struct. Biol. 7 2000 38 43
11. A. Kauko, S. Haataja, A.T. Pulliainen, J. Finne, and A.C. Papageorgiou Crystal structure of Streptococcus suis Dps-like peroxide resistance protein Dpr: implications for iron incorporation J. Mol. Biol. 338 2004 547 558
12. T.A. Halsey, A. Vazquez-Torres, D.J. Gravdahl, F.C. Fang, and S.J. Libby The ferritin-like Dps protein is required for Salmonella enterica Serovar Typhimurium oxidative stress resistance and virulence Infect. Immun. 72 2004 1155 1158
13. M. Almiron, A.J. Link, D. Furlong, and R. Kolter A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli Genes Dev. 6 1992 2646 2654
14. S.C. Andrews, P. Arosio, W. Bottke, J.F. Briat, M. von Darl, P.M. Harrison, J.P. Laulhere, S. Levi, S. Lobreaux, and S.J. Yewdall Structure, function, and evolution of ferritins J. Inorg. Biochem. 47 1992 161 174
15. S. Levi, B. Corsi, E. Rovida, A. Cozzi, P. Santambrogio, A. Albertini, and P. Arosio Construction of a ferroxidase center in human ferritin L-chain J. Biol. Chem. 269 1994 30334 30339
16. D.M. Lawson, A. Treffry, P.J. Artymiuk, P.M. Harrison, S.J. Yewdall, A. Luzzago, G. Cesareni, S. Levi, and P. Arosio Identification of the ferroxidase centre in ferritin FEBS Lett. 254 1989 207 210
17. D.M. Lawson, P.J. Artymiuk, S.J. Yewdall, J.M. Smith, J.C. Livingstone, A. Treffry, A. Luzzago, S. Levi, P. Arosio, and G. Cesareni Solving the structure of human H ferritin by genetically engineering intermolecular crystal contacts Nature 349 1991 541 544
18. P. Santambrogio, S. Levi, A. Cozzi, B. Corsi, and P. Arosio Evidence that the specificity of iron incorporation into homopolymers of human ferritin L- and H-chains is conferred by the nucleation and ferroxidase centres Biochem. J. 314 Pt 1 1996 139 144
19. S. Levi, P. Santambrogio, A. Cozzi, E. Rovida, B. Corsi, E. Tamborini, S. Spada, A. Albertini, and P. Arosio The role of the L-chain in ferritin iron incorporation. Studies of homo and heteropolymers J. Mol. Biol. 238 1994 649 654
20. E. Johnson, D. Cascio, M.R. Sawaya, M. Gingery, and I. Schroder Crystal structures of a tetrahedral open pore ferritin from the hyperthermophilic archaeon Archaeoglobus fulgidus Structure 13 2005 637 648
21. J. Tatur, W.R. Hagen, and P.M. Matias Crystal structure of the ferritin from the hyperthermophilic archaeal anaerobe Pyrococcus furiosus J. Biol. Inorg. Chem. 12 2007 615 630
22. K.K.W. Wong, T. Douglas, S. Gider, D.D. Awschalom, and S. Mann Biomimetic synthesis and characterization of magnetic proteins (Magnetoferritin) Chem. Mater. 10 1998 279 285
23. H.A. Hosein, D.R. Strongin, M. Allen, and T. Douglas Iron and cobalt oxide and metallic nanoparticles prepared from ferritin Langmuir 20 2004 10283 10287
24. F.C. Meldrum, T. Douglas, S. Levi, P. Arosio, and S. Mann Reconstitution of manganese oxide cores in horse spleen and recombinant ferritins J. Inorg. Biochem. 58 1995 59 68
25. M.T. Klem, D. Willits, D.J. Solis, A.M. Belcher, M. Young, and T. Douglas Bio-inspired synthesis of protein-encapsulated CoPt nanoparticles Adv. Funct. Mater. 15 2005 1489 1494
26. T. Ueno, M. Suzuki, T. Goto, T. Matsumoto, K. Nagayama, and Y. Watanabe Size-selective olefin hydrogenation by a Pd nanocluster provided in an apo-ferritin cage Angewandte Chemie-International Edition 43 2004 2527 2530
27. R.M. Kramer, C. Li, D.C. Carter, M.O. Stone, and R.R. Naik Engineered protein cages for nanomaterial synthesis J. Am. Chem. Soc. 126 2004 13282 13286
28. D. Ensign, M. Young, and T. Douglas Photocatalytic synthesis of copper colloids from Cu(II) by the ferrihydrite core of ferritin Inorg. Chem. 43 2004 3441 3446
29. K.K.W. Wong, and S. Mann Biomimetic synthesis of cadmium sulfide-ferritin nanocomposites Adv. Mater. 8 1996 928
30. K. Iwahori, K. Yoshizawa, M. Muraoka, and I. Yamashita Fabrication of ZnSe nanoparticles in the apoferritin cavity by designing a slow chemical reaction system Inorg. Chem. 44 2005 6393 6400
31. I. Yamashita, K. Iwahori, S. Kumagai, Ferritin in the field of nanodevices, Biochim. Biophys. Acta 1800 (8) (2010) 846-857.
32. C. Geourjon, and G. Deleage SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments Comput. Appl. Biosciences 11 1995 681 684
33. A. Treffry, and P.M. Harrison Incorporation and release of inorganic-phosphate in horse spleen ferritin Biochem. J. 171 1978 313 320
34. E.P. Paques, A. Paques, and R.R. Crichton A study of the mechanism of ferritin formation - the effect of Ph, ionic-strength and temperature, inhibition by imidazole and kinetic-analysis Eur. J. Biochem. 107 1980 447 453
35. P. Santambrogio, A. Cozzi, S. Levi, E. Rovida, F. Magni, A. Albertini, and P. Arosio Functional and immunological analysis of recombinant mouse H- and L-ferritins from Escherichia coli Protein Expr. Purif. 19 2000 212 218
36. S.I. Heaney, and W. Davison Determination of ferrous iron in natural-waters with 2,2′ bipyridyl Limnology and Oceanography 22 1977 753 760
37. J.A. Eisen, K.E. Nelson, I.T. Paulsen, J.F. Heidelberg, M. Wu, R.J. Dodson, R. Deboy, M.L. Gwinn, W.C. Nelson, D.H. Haft, E.K. Hickey, J.D. Peterson, A.S. Durkin, J.L. Kolonay, F. Yang, I. Holt, L.A. Umayam, T. Mason, M. Brenner, T.P. Shea, D. Parksey, W.C. Nierman, T.V. Feldblyum, C.L. Hansen, M.B. Craven, D. Radune, J. Vamathevan, H. Khouri, O. White, T.M. Gruber, K.A. Ketchum, J.C. Venter, H. Tettelin, D.A. Bryant, and C.M. Fraser The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium Proc. Natl. Acad. Sci. U S A 99 2002 9509 9514
38. T.J. Stillman, P.D. Hempstead, P.J. Artymiuk, S.C. Andrews, A.J. Hudson, A. Treffry, J.R. Guest, and P.M. Harrison The high-resolution X-ray crystallographic structure of the ferritin (EcFtnA) of Escherichia coli; comparison with human H ferritin (HuHF) and the structures of the Fe(3+) and Zn(2+) derivatives J. Mol. Biol. 307 2001 587 603
39. K.J. Cho, H.J. Shin, J.H. Lee, K.J. Kim, S.S. Park, Y. Lee, C. Lee, and K.H. Kim The crystal structure of ferritin from Helicobacter pylori reveals unusual conformational changes for iron uptake J. Mol. Biol. 390 2009 83 98
40. P.D. Hempstead, S.J. Yewdall, A.R. Fernie, D.M. Lawson, P.J. Artymiuk, D.W. Rice, G.C. Ford, and P.M. Harrison Comparison of the three-dimensional structures of recombinant human H and horse L ferritins at high resolution J. Mol. Biol. 268 1997 424 448
41. A. Lewin, G.R. Moore, and N.E. Le Brun Formation of protein-coated iron minerals Dalton Trans. 2005 3597 3610
42. H. Shi, K.Z. Bencze, T.L. Stemmler, and C.C. Philpott A cytosolic iron chaperone that delivers iron to ferritin Science 320 2008 1207 1210
43. S.C. Andrews, The ferritin-like superfamily: evolution of the biological iron storeman from a rubrerythrin-like ancestor, Biochim. Biophys. Acta 1800 (8) (2010) 691-705.
44. E. Chiancone, P. Ceci, A. Ilari, F. Ribacchi, and S. Stefanini Iron and proteins for iron storage and detoxification Biometals 17 2004 197 202
45. K. Honarmand Ebrahimi, P.L. Hagedoorn, J.A. Jongejan, and W.R. Hagen Catalysis of iron core formation in Pyrococcus furiosus ferritin J. Biol. Inorg. Chem. 14 2009 1265 1274
46. S. Levi, A. Luzzago, F. Franceschinelli, P. Santambrogio, G. Cesareni, and P. Arosio Mutational analysis of the channel and loop sequences of human ferritin H-chain Biochem. J. 264 1989 381 388
47. S. Levi, A. Luzzago, G. Cesareni, A. Cozzi, F. Franceschinelli, A. Albertini, and P. Arosio Mechanism of ferritin iron uptake: activity of the H-chain and deletion mapping of the ferro-oxidase site. A study of iron uptake and ferro-oxidase activity of human liver, recombinant H-chain ferritins, and of two H-chain deletion mutants J. Biol. Chem. 263 1988 18086 18092
48. A. Treffry, P.M. Harrison, A. Luzzago, and G. Cesareni Recombinant H-chain ferritins: effects of changes in the 3-fold channels FEBS Lett. 247 1989 268 272
49. N. Parthasarathy, S.V. Torti, and F.M. Torti Ferritin binds to light chain of human H-kininogen and inhibits kallikrein-mediated bradykinin release Biochem. J. 365 2002 279 286
50. X.S. Liu, L.D. Patterson, M.J. Miller, and E.C. Theil Peptides selected for the protein nanocage pores change the rate of iron recovery from the ferritin mineral J. Biol. Chem. 282 2007 31821 31825
51. P. Santambrogio, and W.H. Massover Rabbit serum alpha-2-macroglobulin binds to liver ferritin: association causes a heterogeneity of ferritin molecules Br. J. Haematol. 71 1989 281 290
52. H. Sakamoto, T. Kuboi, T. Nagakura, S. Hayashi, F. Hoshi, K. Mutoh, K. Watanabe, and K. Orino Characterization of feline serum ferritin-binding proteins: the presence of a novel ferritin-binding protein as an inhibitory factor in feline ferritin immunoassay Biometals 22 2009 793 802