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Volumn 39, Issue 1, 2011, Pages 292-299

The ends of a large RNA molecule are necessarily close

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; SINGLE STRANDED RNA;

EID: 78651284122     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq642     Document Type: Article
Times cited : (54)

References (30)
  • 1
    • 0037303672 scopus 로고    scopus 로고
    • Fine mapping of a cis-acting sequence element in yellow fever virus RNA that is required for RNA replication and cyclization
    • Corver, J., Lenches, E., Smith, K., Robison, R.A., Sando, T., Strauss, E.G. and Strauss, J.H. (2003) Fine mapping of a cis-acting sequence element in yellow fever virus RNA that is required for RNA replication and cyclization. J. Virol., 77, 2265-2270.
    • (2003) J. Virol. , vol.77 , pp. 2265-2270
    • Corver, J.1    Lenches, E.2    Smith, K.3    Robison, R.A.4    Sando, T.5    Strauss, E.G.6    Strauss, J.H.7
  • 2
    • 0023445054 scopus 로고
    • Genomic RNAs of influenza viruses are held in a circular conformation in virions and in infected cells by a terminal panhandle
    • Hsu, M.-T., Parvin, J.D., Gupta, S., Krystal, M. and Palese, P. (1987) Genomic RNAs of influenza viruses are held in a circular conformation in virions and in infected cells by a terminal panhandle. Proc. Natl Acad. Sci. USA, 84, 8140-8144.
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 8140-8144
    • Hsu, M.-T.1    Parvin, J.D.2    Gupta, S.3    Krystal, M.4    Palese, P.5
  • 3
    • 0018667611 scopus 로고
    • Biophysical studies of circle formation by sindbis virus 49S RNA
    • Frey, T.K., Gard, D.L. and Strauss, J.H. (1979) Biophysical studies of circle formation by sindbis virus 49S RNA. J. Mol. Biol., 132, 1-18.
    • (1979) J. Mol. Biol. , vol.132 , pp. 1-18
    • Frey, T.K.1    Gard, D.L.2    Strauss, J.H.3
  • 6
    • 0026038913 scopus 로고
    • The cap and poly(A) tail function synergistically to regulate mRNA translational efficiency
    • Gallie, D.R. (1991) The cap and poly(A) tail function synergistically to regulate mRNA translational efficiency. Genes Dev., 5, 2108-2116.
    • (1991) Genes Dev. , vol.5 , pp. 2108-2116
    • Gallie, D.R.1
  • 8
    • 33748945417 scopus 로고    scopus 로고
    • Long-distance RNA-RNA interactions in plant virus gene expression and replication
    • Miller, W.A. and White, K.A. (2006) Long-distance RNA-RNA interactions in plant virus gene expression and replication. Annu. Rev. Phytopathol., 44, 447-467.
    • (2006) Annu. Rev. Phytopathol. , vol.44 , pp. 447-467
    • Miller, W.A.1    White, K.A.2
  • 9
    • 38649130986 scopus 로고    scopus 로고
    • Translation mechanisms involving long-distance base pairing interactions between the 50 and 30 non-translated regions and internal ribosomal entry are conserved for both genomic RNAs of blackcurrant reversion nepovirus
    • Karetnikov, A. and Lehto, K. (2008) Translation mechanisms involving long-distance base pairing interactions between the 50 and 30 non-translated regions and internal ribosomal entry are conserved for both genomic RNAs of blackcurrant reversion nepovirus. Virology, 371, 292-308.
    • (2008) Virology , vol.371 , pp. 292-308
    • Karetnikov, A.1    Lehto, K.2
  • 10
    • 3142660625 scopus 로고    scopus 로고
    • 50-30 RNA-RNA interaction facilitates cap- and poly(A) tail-independent translation of tomato bushy stunt virus mRNA: A potential common mechanism for Tombusviridae
    • Fabian, M.R. and White, K.A. (2004) 50-30 RNA-RNA interaction facilitates cap- and poly(A) tail-independent translation of tomato bushy stunt virus mRNA: a potential common mechanism for Tombusviridae. J. Biol. Chem., 279, 28862-28872.
    • (2004) J. Biol. Chem. , vol.279 , pp. 28862-28872
    • Fabian, M.R.1    White, K.A.2
  • 11
    • 14844342574 scopus 로고    scopus 로고
    • DNA twisting flexibility and the formation of sharply looped protein-DNA complexes
    • Cloutier, T.E. and Widom, J. (2005) DNA twisting flexibility and the formation of sharply looped protein-DNA complexes. Proc. Natl Acad. Sci. USA, 102, 3645-3650.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 3645-3650
    • Cloutier, T.E.1    Widom, J.2
  • 13
    • 0019876473 scopus 로고
    • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
    • Zuker, M. and Stiegler, P. (1981) Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucl. Acids Res., 9, 133-148.
    • (1981) Nucl. Acids Res. , vol.9 , pp. 133-148
    • Zuker, M.1    Stiegler, P.2
  • 14
    • 0000616205 scopus 로고
    • RNA secondary structures and their prediction
    • Zuker, M. and Sankoff, D. (1984) RNA secondary structures and their prediction. Bull. Math. Biol., 46, 591-621.
    • (1984) Bull. Math. Biol. , vol.46 , pp. 591-621
    • Zuker, M.1    Sankoff, D.2
  • 18
    • 33846818594 scopus 로고    scopus 로고
    • Asymptotic expected number of base pairs in optimal secondary structure for random RNA using the Nussinov-Jacobson energy model
    • Clote, P., Kranakis, E., Krizanc, D. and Stacho, L. (2007) Asymptotic expected number of base pairs in optimal secondary structure for random RNA using the Nussinov-Jacobson energy model. Discr. Appl. Math., 155, 759-787.
    • (2007) Discr. Appl. Math. , vol.155 , pp. 759-787
    • Clote, P.1    Kranakis, E.2    Krizanc, D.3    Stacho, L.4
  • 19
    • 0019082587 scopus 로고
    • Fast algorithm for predicting the secondary structure of single stranded RNA
    • Nussinov, R. and Jacobson, A.B. (1980) Fast algorithm for predicting the secondary structure of single stranded RNA. Proc. Natl Acad. Sci. USA, 77, 6309-6313.
    • (1980) Proc. Natl Acad. Sci. USA , vol.77 , pp. 6309-6313
    • Nussinov, R.1    Jacobson, A.B.2
  • 20
    • 0014238951 scopus 로고
    • Statistics of branching and hairpin helices for the dAT copolymer
    • de Gennes, P.G. (1968) Statistics of branching and hairpin helices for the dAT copolymer. Biopolymers, 6, 715-729.
    • (1968) Biopolymers , vol.6 , pp. 715-729
    • De Gennes, P.G.1
  • 22
    • 0033080745 scopus 로고    scopus 로고
    • Complete suboptimal folding of RNA and the stability of secondary structures
    • Wuchty, S., Fontana, W., Hofacker, I.L. and Schuster, P. (1999) Complete suboptimal folding of RNA and the stability of secondary structures. Biopolymers, 49, 145-165.
    • (1999) Biopolymers , vol.49 , pp. 145-165
    • Wuchty, S.1    Fontana, W.2    Hofacker, I.L.3    Schuster, P.4
  • 23
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 24
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews, D.H., Sabina, J., Zuker, M. and Turner, D.H. (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol., 288, 911-940.
    • (1999) J. Mol. Biol. , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 25
    • 26644439939 scopus 로고    scopus 로고
    • JViz.Rna-a Java tool for RNA secondary structure visualization
    • Wiese, K.C., Glen, E. and Vasudevan, A. (2005) JViz.Rna-a Java tool for RNA secondary structure visualization. IEEE T. Nanobiosci., 4, 212-218.
    • (2005) IEEE T. Nanobiosci. , vol.4 , pp. 212-218
    • Wiese, K.C.1    Glen, E.2    Vasudevan, A.3
  • 26
    • 0001509501 scopus 로고
    • Secondary structure of single-stranded nucleic acids
    • Waterman, M.S. (1978) Secondary structure of single-stranded nucleic acids. Adv. Math. Suppl. Stud., 1, 167-212.
    • (1978) Adv. Math. Suppl. Stud. , vol.1 , pp. 167-212
    • Waterman, M.S.1
  • 27
    • 0031599142 scopus 로고    scopus 로고
    • Mersenne Twister: A 623-dimensionally equidistributed uniform pseudo-random number generator
    • Matsumoto, M. and Nishimura, T. (1998) Mersenne Twister: A 623-dimensionally equidistributed uniform pseudo-random number generator. ACM T Model. Comput. Sci., 8, 3-30.
    • (1998) ACM T Model. Comput. Sci. , vol.8 , pp. 3-30
    • Matsumoto, M.1    Nishimura, T.2
  • 28
    • 3342977915 scopus 로고    scopus 로고
    • Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization
    • Mathews, D.H. (2004) Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization. RNA, 10, 1178-1190.
    • (2004) RNA , vol.10 , pp. 1178-1190
    • Mathews, D.H.1
  • 30
    • 0029258928 scopus 로고
    • Keeping RNA happy
    • Uhlenbeck, O.C. (1995) Keeping RNA happy. RNA, 1, 4-6.
    • (1995) RNA , vol.1 , pp. 4-6
    • Uhlenbeck, O.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.