-
1
-
-
0027479628
-
Functional sites in the 5′ region of human immunodeficiency virus type 1 RNA form defined structural domains
-
Baudin,F., Marquet,R., Isel,C., Darlix,J.L., Ehresmann,B. and Ehresmann,C. (1993) Functional sites in the 5′ region of human immunodeficiency virus type 1 RNA form defined structural domains. J. Mol. Biol., 229, 382-397.
-
(1993)
J. Mol. Biol
, vol.229
, pp. 382-397
-
-
Baudin, F.1
Marquet, R.2
Isel, C.3
Darlix, J.L.4
Ehresmann, B.5
Ehresmann, C.6
-
2
-
-
0024322804
-
Tat trans-activates the human immunodeficiency virus through a nascent RNA target
-
Berkhout,B., Silverman,R.H. and Jeang,K.T. (1989) Tat trans-activates the human immunodeficiency virus through a nascent RNA target. Cell 59, 273-282.
-
(1989)
Cell
, vol.59
, pp. 273-282
-
-
Berkhout, B.1
Silverman, R.H.2
Jeang, K.T.3
-
3
-
-
0026064723
-
HIV-1 Tat protein promotes formation of more-processive elongation complexes
-
Marciniak,R.A. and Sharp,P.A. (1991) HIV-1 Tat protein promotes formation of more-processive elongation complexes. EMBO J., 10 4189-4196.
-
(1991)
EMBO J
, vol.10
, pp. 4189-4196
-
-
Marciniak, R.A.1
Sharp, P.A.2
-
4
-
-
0029120074
-
Requirements for DNA strand transfer during reverse transcription in mutant HIV-1 virions
-
Berkhout,B., van Wamel,J. and Klaver,B. (1995) Requirements for DNA strand transfer during reverse transcription in mutant HIV-1 virions. J. Mol. Biol., 252, 59-69.
-
(1995)
J. Mol. Biol
, vol.252
, pp. 59-69
-
-
Berkhout, B.1
van Wamel, J.2
Klaver, B.3
-
5
-
-
0034903425
-
Structural features in the HIV-1 repeat region facilitate strand transfer during reverse transcription
-
Berkhout,B., Vastenhouw,N.L., Klasens,B.I. and Huthoff,H. (2001) Structural features in the HIV-1 repeat region facilitate strand transfer during reverse transcription. RNA, 7, 1097-1114.
-
(2001)
RNA
, vol.7
, pp. 1097-1114
-
-
Berkhout, B.1
Vastenhouw, N.L.2
Klasens, B.I.3
Huthoff, H.4
-
6
-
-
18744362727
-
Long-range RNA-RNA interactions circularize the dengue virus genome
-
Alvarez,D.E., Lodeiro,M.F., Luduena,S.J., Pietrasanta,L.I. and Gamarnik,A.V. (2005) Long-range RNA-RNA interactions circularize the dengue virus genome. J. Virol., 79, 6631-6643.
-
(2005)
J. Virol
, vol.79
, pp. 6631-6643
-
-
Alvarez, D.E.1
Lodeiro, M.F.2
Luduena, S.J.3
Pietrasanta, L.I.4
Gamarnik, A.V.5
-
7
-
-
0037102438
-
A 5′-3′ long-range interaction in Ty1 RNA controls its reverse transcription and retrotransposition
-
Cristofari,G., Bampi,C., Wilhelm,M., Wilhelm,F.X. and Darlix,J.L. (2002) A 5′-3′ long-range interaction in Ty1 RNA controls its reverse transcription and retrotransposition. EMBO J., 21, 4368-4379.
-
(2002)
EMBO J
, vol.21
, pp. 4368-4379
-
-
Cristofari, G.1
Bampi, C.2
Wilhelm, M.3
Wilhelm, F.X.4
Darlix, J.L.5
-
8
-
-
0036298692
-
Recognition of eIF4G by rotavirus NSP3 reveals a basis for mRNA circularization
-
Groft,C.M. and Burley,S.K. (2002) Recognition of eIF4G by rotavirus NSP3 reveals a basis for mRNA circularization. Mol. Cell, 9, 1273-1283.
-
(2002)
Mol. Cell
, vol.9
, pp. 1273-1283
-
-
Groft, C.M.1
Burley, S.K.2
-
9
-
-
0035947236
-
Base-pairing between untranslated regions facilitates translation of uncapped, nonpolyadenylated viral RNA
-
Guo,L., Allen,E.M. and Miller,W.A. (2001) Base-pairing between untranslated regions facilitates translation of uncapped, nonpolyadenylated viral RNA. Mol. Cell, 7, 1103-1109.
-
(2001)
Mol. Cell
, vol.7
, pp. 1103-1109
-
-
Guo, L.1
Allen, E.M.2
Miller, W.A.3
-
10
-
-
0035265836
-
Poliovirus RNA replication requires genome circularization through a protein-protein bridge
-
Herold,J. and Andino,R. (2001) Poliovirus RNA replication requires genome circularization through a protein-protein bridge. Mol. Cell 7, 581-591.
-
(2001)
Mol. Cell
, vol.7
, pp. 581-591
-
-
Herold, J.1
Andino, R.2
-
11
-
-
0034984219
-
Essential role of cyclization sequences in flavivirus RNA replication
-
Khromykh,A.A., Meka,H., Guyatt,K.J. and Westaway,E.G. (2001) Essential role of cyclization sequences in flavivirus RNA replication. J. Virol., 75, 6719-6728.
-
(2001)
J. Virol
, vol.75
, pp. 6719-6728
-
-
Khromykh, A.A.1
Meka, H.2
Guyatt, K.J.3
Westaway, E.G.4
-
12
-
-
0035844132
-
In vitro RNA synthesis from exogenous dengue viral RNA templates requires long range interactions between 5′- and 3′-terminal regions that influence RNA structure
-
You,S., Falgout,B., Markoff,L. and Padmanabhan,R. (2001) In vitro RNA synthesis from exogenous dengue viral RNA templates requires long range interactions between 5′- and 3′-terminal regions that influence RNA structure. J. Biol. Chem., 276, 15581-15591.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 15581-15591
-
-
You, S.1
Falgout, B.2
Markoff, L.3
Padmanabhan, R.4
-
13
-
-
0033059194
-
Identification of the RNA-binding, dimerization, and eIF4GI-binding domains of rotavirus nonstructural protein NSP3
-
Piron,M., Delaunay,T., Grosclaude,J. and Poncet,D. (1999) Identification of the RNA-binding, dimerization, and eIF4GI-binding domains of rotavirus nonstructural protein NSP3. J. Virol., 73, 5411-5421.
-
(1999)
J. Virol
, vol.73
, pp. 5411-5421
-
-
Piron, M.1
Delaunay, T.2
Grosclaude, J.3
Poncet, D.4
-
14
-
-
0036302277
-
Rotavirus protein NSP3 shuts off host cell protein synthesis
-
Padilla-Noriega,L., Paniagua,O. and Guzman-Leon,S. (2002) Rotavirus protein NSP3 shuts off host cell protein synthesis. Virology, 298, 1-7.
-
(2002)
Virology
, vol.298
, pp. 1-7
-
-
Padilla-Noriega, L.1
Paniagua, O.2
Guzman-Leon, S.3
-
16
-
-
0029796006
-
Role of the DIS hairpin in replication of human immunodeficiency virus type 1
-
Berkhout,B. and van Wamel,J.L.B. (1996) Role of the DIS hairpin in replication of human immunodeficiency virus type 1. J. Virol., 70, 6723-6732.
-
(1996)
J. Virol
, vol.70
, pp. 6723-6732
-
-
Berkhout, B.1
van Wamel, J.L.B.2
-
17
-
-
0037372281
-
Dimerization and template switching in the 5′ untranslated region between various subtypes of Human Immunodeficiency Virus type 1
-
Andersen,E.S., Jeeninga,R.E., Damgaard,C.K., Berkhout,B. and Kjems,J. (2003) Dimerization and template switching in the 5′ untranslated region between various subtypes of Human Immunodeficiency Virus type 1. J. Virol., 77, 3020-3030.
-
(2003)
J. Virol
, vol.77
, pp. 3020-3030
-
-
Andersen, E.S.1
Jeeninga, R.E.2
Damgaard, C.K.3
Berkhout, B.4
Kjems, J.5
-
18
-
-
0036798069
-
The bulge region of HIV-1 TAR RNA binds metal ions in solution
-
Olejniczak,M., Gdaniec,Z., Fischer,A., Grabarkiewicz,T., Bielecki,L. and Adamiak,R.W. (2002) The bulge region of HIV-1 TAR RNA binds metal ions in solution. Nucleic Acids Res., 30, 4241-4249.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4241-4249
-
-
Olejniczak, M.1
Gdaniec, Z.2
Fischer, A.3
Grabarkiewicz, T.4
Bielecki, L.5
Adamiak, R.W.6
-
19
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker,M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
20
-
-
18044365239
-
Specific interactions between HIV-1 nucleocapsid protein and the TAR element
-
Kanevsky,I., Chaminade,F., Ficheux,D., Moumen,A., Gorelick,R., Negroni,M., Darlix,J.L. and Fosse,P. (2005) Specific interactions between HIV-1 nucleocapsid protein and the TAR element. J. Mol. Biol. 348, 1059-1077.
-
(2005)
J. Mol. Biol
, vol.348
, pp. 1059-1077
-
-
Kanevsky, I.1
Chaminade, F.2
Ficheux, D.3
Moumen, A.4
Gorelick, R.5
Negroni, M.6
Darlix, J.L.7
Fosse, P.8
-
21
-
-
30744474178
-
Structural differentiation of the HIV-1 polyA signals
-
Gee,A.H., Kasprzak,W. and Shapiro,B.A. (2006) Structural differentiation of the HIV-1 polyA signals. J. Biomol. Struct. Dyn., 23, 417-428.
-
(2006)
J. Biomol. Struct. Dyn
, vol.23
, pp. 417-428
-
-
Gee, A.H.1
Kasprzak, W.2
Shapiro, B.A.3
-
22
-
-
0037155223
-
In vitro evidence for a long range pseudoknot in the 5′-untranslated and matrix coding regions of HIV-1 genomic RNA
-
Paillart,J.C., Skripkin,E., Ehresmann,B., Ehresmann,C. and Marquet,R. (2002) In vitro evidence for a long range pseudoknot in the 5′-untranslated and matrix coding regions of HIV-1 genomic RNA. J. Biol. Chem., 277, 5995-6004.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 5995-6004
-
-
Paillart, J.C.1
Skripkin, E.2
Ehresmann, B.3
Ehresmann, C.4
Marquet, R.5
-
23
-
-
0032889526
-
A hairpin structure in the R region of the Human Immunodeficiency Virus type 1 RNA genome is instrumental in polyadenylation site selection
-
Das,A.T., Klaver,B. and Berkhout,B. (1999) A hairpin structure in the R region of the Human Immunodeficiency Virus type 1 RNA genome is instrumental in polyadenylation site selection. J. Virol., 73 81-91.
-
(1999)
J. Virol
, vol.73
, pp. 81-91
-
-
Das, A.T.1
Klaver, B.2
Berkhout, B.3
-
24
-
-
0027331556
-
Modified nucleotides of tRNA(3Lys) modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription
-
Isel,C., Marquet,R., Keith,G., Ehresmann,C. and Ehresmann,B. (1993) Modified nucleotides of tRNA(3Lys) modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription. J. Biol. Chem., 268, 25269-25272.
-
(1993)
J. Biol. Chem
, vol.268
, pp. 25269-25272
-
-
Isel, C.1
Marquet, R.2
Keith, G.3
Ehresmann, C.4
Ehresmann, B.5
-
25
-
-
0035903185
-
Initiation of HIV-1 reverse transcription is regulated by a primer activation signal
-
Beerens,N., Groot,F. and Berkhout,B. (2001) Initiation of HIV-1 reverse transcription is regulated by a primer activation signal. J. Biol. Chem., 276, 31247-31256.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 31247-31256
-
-
Beerens, N.1
Groot, F.2
Berkhout, B.3
-
26
-
-
0038190989
-
Efficient initiation of HIV-1 reverse transcription in vitro. Requirement for RNA sequences downstream of the primer binding site abrogated by nucleocapsid protein-dependent primer-template interactions
-
Iwatani,Y., Rosen,A.E., Guo,J., Musier-Forsyth,K. and Levin,J.G. (2003) Efficient initiation of HIV-1 reverse transcription in vitro. Requirement for RNA sequences downstream of the primer binding site abrogated by nucleocapsid protein-dependent primer-template interactions. J. Biol. Chem., 278, 14185-14195.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 14185-14195
-
-
Iwatani, Y.1
Rosen, A.E.2
Guo, J.3
Musier-Forsyth, K.4
Levin, J.G.5
-
27
-
-
0026447940
-
Mutational inactivation of an inhibitory sequence in human immunodeficiency virus type 1 results in Rev-independent gag expression
-
Schwartz,S., Campbell,M., Nasioulas,G., Harrison,J., Felber,B.K. and Pavlakis,G.N. (1992) Mutational inactivation of an inhibitory sequence in human immunodeficiency virus type 1 results in Rev-independent gag expression. J. Virol., 66, 7176-7182.
-
(1992)
J. Virol
, vol.66
, pp. 7176-7182
-
-
Schwartz, S.1
Campbell, M.2
Nasioulas, G.3
Harrison, J.4
Felber, B.K.5
Pavlakis, G.N.6
-
28
-
-
0026555177
-
Distinct RNA sequences in the gag region of human immunodeficiency virus type 1 decrease RNA stability and inhibit expression in the absence of Rev protein
-
Schwartz,S., Felber,B.K. and Pavlakis,G.N. (1992) Distinct RNA sequences in the gag region of human immunodeficiency virus type 1 decrease RNA stability and inhibit expression in the absence of Rev protein. J. Virol., 66, 150-159.
-
(1992)
J. Virol
, vol.66
, pp. 150-159
-
-
Schwartz, S.1
Felber, B.K.2
Pavlakis, G.N.3
-
29
-
-
0031026625
-
Preferential binding of poly(A)-binding protein 1 to an inhibitory RNA element in the human immunodeficiency virus type 1 gag mRNA
-
Afonina,E., Neumann,M. and Pavlakis,G.N. (1997) Preferential binding of poly(A)-binding protein 1 to an inhibitory RNA element in the human immunodeficiency virus type 1 gag mRNA. J. Biol. Chem., 272, 2307-2311.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 2307-2311
-
-
Afonina, E.1
Neumann, M.2
Pavlakis, G.N.3
-
30
-
-
0025762042
-
The multiple RNA-binding domains of the mRNA poly(A)-binding protein have different RNA-binding activities
-
Burd,C.G., Matunis,E.L. and Dreyfuss,G. (1991) The multiple RNA-binding domains of the mRNA poly(A)-binding protein have different RNA-binding activities. Mol. Cell. Biol., 11, 3419-3424.
-
(1991)
Mol. Cell. Biol
, vol.11
, pp. 3419-3424
-
-
Burd, C.G.1
Matunis, E.L.2
Dreyfuss, G.3
|