Channel and nonchannel forms of spin-labeled gramicidin in membranes and their equilibria

Journal of Physical Chemistry B

Volumn 115, Issue 1, 2011, Pages 176-185

  Dzikovski, Boris G ^a   Borbat, Peter P ^a   Freed, Jack H ^a  

^a National Biomedical Center for Advanced ESR Technology Department of Chemistry and Chemical Biology Cornell University ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ETHANOL; MEMBRANES; MOLECULES; MONOMERS; ORGANIC SOLVENTS;

BACKBONE STRUCTURES; CHANNEL FORMATION; COMPLEX EQUILIBRIA; DIPOLAR SPECTRA; DOUBLE HELIX; DOUBLE-HELICAL; GEL PHASE; GRAMICIDIN A; GRAMICIDIN CHANNELS; INTERSPIN DISTANCES; MONOMERIC FORMS; MONOMERIC UNITS; N-TERMINALS; PHOSPHATIDYL CHOLINE; TRIFLUOROETHANOL;

DIMERS;

EID: 78651237011     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp108105k     Document Type: Article

References (70)

1. Borbat, P. P.; Mchaourab, H. S.; Freed, J. H. J. Am. Chem. Soc. 2002, 124, 5304
2. Hubbell, W.; Altenbach, C. Site-directed spin labeling of membrane proteins. In Membrane Protein Structure:Experimental Approaches; White, S. H., Ed.; Oxford University Press: London, 1994; p 224.
3. Steinhoff, H.-J. Biol. Chem. 2007, 385, 913
4. Borbat, P. P.; Freed, J. H. Methods Enzymol. 2007, 423, 52
5. Freed, J. H. ESR and Molecular Dynamics, Ch.9. In Biological Magnetic Resonance, v.24. Biomedical EPR, Part B: Methodology, Instrumentation and Dynamics; Eaton, S. G. E.; Berliner, L. J., Ed., Kluwer, NY; 2005; Vol. 24, p 239.
6. Hubbell, W.; Altenbach, C. Curr. Opin. Struct. Biol. 1994, 4, 566
7. Liang, Z.; Freed, J. H. J. Phys. Chem. B 1999, 103, 6384
8. Borbat, P. P.; Costa-Filho, A. J.; Earle, K. A.; Moscicki, J. K.; Freed, J. H. Science 2001, 291, 266
9. Lou, Y.; Ge, M.; Freed, J. H. J. Phys. Chem. B 2001, 105, 11053
10. Sezer, D.; Freed, J. H.; Roux, B. J. Am. Chem. Soc. 2009, 131, 2597
11. Zhang, Z.; Fleissner, M.; Tipikin, D.; Liang, Z.; Moscicki, J. K.; Earle, K. A.; Hubbell, W.; Freed, J. H. J. Phys. Chem. B 2010, 114, 5503
12. Busath, D. D. Annu. Rev. Physiol. 1993, 55, 473
13. Andersen, O. S.; Koeppe, R. E. I.; Roux, B. Gramicidin Channels: Versatile Tools. Biological Membranes Ion Channels. Dinamics, Structure and Applications; Springer: New York, 2007; p 33.
14. Wallace, B. A. J. Struct. Biol. 1998, 121, 123
15. Hotchkiss, R. D.; Dubois, R. J. J. Biol. Chem. 1940, 132, 791
16. Sarges, R.; Witkop, B. J. Am. Chem. Soc. 1965, 87
17. Veatch, W. R.; Blout, E. R. Biochemistry 1974, 13, 5257
18. Langs, D. A. Science 1988, 241, 188
19. Burkhart, B. M.; Gassman, R. M.; Langs, D. A.; Pangborn, W. A.; Duax, W. L. Biophys. J. 1998, 75, 2135
20. Burkhart, B. M.; Li, N.; Langs, D. A.; Pangborn, W. A.; Duax, W. L. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 12950
21. Chen, Y.; Tucker, A.; Wallace, B. A. J. Mol. Biol. 1996, 264, 757
22. Doyle, D. A.; Wallace, B. A. J. Mol. Biol. 1997, 266, 963
23. Ketchem, R. R.; Roux, B.; Cross, T. A. Structure (London) 1997, 5, 1655
24. Arseniev, A. S.; Lomize, A. L.; Barsukov, I. L.; Bystrov, V. F. Biol. Membr. 1986, 3, 1077
25. Townsley, L. E.; Tucker, W. A.; Sham, S.; Hinton, J. F. Biochemistry 2001, 40, 11676
26. Sun, H.; Greathouse, D. V.; Andersen, O. S.; Koeppe, R. E. I. J. Biol. Chem. 2008, 283, 22233
27. Killian, J. A. Biochim. Biophys. Acta 1998, 1376, 401
28. Mobashery, N.; Nielsen, C. M.; Andersen, O. S. FEBS Lett. 1997, 412, 15
29. Dzikovski, B. G.; Borbat, P. P.; Freed, J. H. Biophys. J. 2004, 87, 3504
30. Dzikovski, B. G.; Earle, K. A.; Pachtchenko, S. V.; Freed, J. H. J. Magn. Reson. 2006, 179, 273
31. He, K.; Ludtke, S. J.; Wu, Y.; Huang, H. W.; Andersen, O. S.; Greathouse, D.; Koeppe, R. E., II. Biophys. Chem. 1994, 49, 83
32. Bamberg, E.; Läuger, P. J. Membr. Biol. 1973, 11, 177
33. Rokitskaya, T. I.; Antonenko, Y. N.; Kotova, E. A. Biochim. Biophys. Acta 1996, 1275, 221
34. Lundbaek, J. A.; Andersen, O. S. Biophys. J. 1999, 76, 889
35. Sychev, S. V.; Barsukov, L. I.; Ivanov, V. T. Eur. Biophys. J. 1993, 22, 279
36. Zein, M.; Winter, R. Phys. Chem. Chem. Phys. 2000, 2, 4545
37. Schönknecht, G.; Althoff, G.; Junge, W. J. Membr. Biol. 1992, 126, 265
38. Mou, J.; Czajkowsky, D. M.; Shao, Z. Biochemistry 1996, 35, 3222
39. Tank, D. W.; Wu, E. S.; Meers, P. R.; Webb, W. W. Biophys. J. 1982, 40, 129
40. Veatch, W. R.; Mathies, R.; Eisenberg, M.; Stryer, L. J. Mol. Biol. 1975, 99, 75
41. Macdonald, P. M.; Seelig, J. Biochemistry 1988, 27, 2357
42. Pepinsky, R. B.; Feigenson, G. W. Anal. Biochem. 1978, 86, 512
43. Upadhyay, A. K.; Borbat, P. P.; Wang, J.; Freed, J. H.; Edmondson, D. E. Biochemistry 2008, 47, 1554
44. Chiang, Y.-W.; Borbat, P. P.; Freed, J. H. J. Magn. Reson. 2005, 172, 279
45. Wallace, B. A.; Ravikumar, K. Science 1988, 241, 182-187
46. Arseniev, A. S.; Barsukov, L. I.; Bystrov, V. F. FEBS Lett. 1985, 180, 33
47. Pascal, S. M.; Cross, T. A. J. Mol. Biol. 1992, 226, 1101
48. Pascal, S. M.; Cross, T. A. J. Biomol. NMR 1993, 3, 495
49. O'Boyle, F.; Wallace, B. A. Protein Pept. Lett. 2003, 10, 9
50. Hansch, C. Acc. Chem. Res. 1969, 2, 232
51. Bouchard, M.; Auger, M. Biophys. J. 1993, 65, 2484
52. Killian, J. A. Biochim. Biophys. Acta 1992, 1113, 391
53. Urry, D. W.; Mayers, D. F.; Haider, J. Biochemistry 1972, 11, 487
54. Jagannadham, M. V.; Nagaraj, R. Biopolymers 2005, 80, 708
55. Hawkes, G. E.; Lian, L.-Y.; Randall, E. W.; Sales, K. D.; Curzon, E. H. Eur. J. Biochem. 1987, 166, 437
56. Barnes, J. P.; Freed, J. H. Biophys. J. 1988, 75, 2532
57. Larsen, R. G.; Singel, D. J. J. Chem. Phys. 1993, 98, 5134
58. de Planque, M. R. R.; Kruijtzer, J. A. W.; Liskamp, R. M. J.; Marsh, D.; Greathouse, D. V.; Koeppe, R. E. I.; de Kruijff, B.; Killian, A. J. J. Biol. Chem. 1999, 274, 20839-20846
59. Harroun, T. A.; Heller, W. T.; Weiss, T. M.; Yang, L.; Huang, H. W. Biophys. J. 1999, 76, 937
60. Nielsen, C. M.; Goulian, M.; Andersen, O. S. Biophys. J. 1998, 74, 1966
61. Katsaras, J.; Prosser, R. S.; Stinson, R. H.; Davis, J. H. Biophys. J. 1992, 61, 827
62. Killian, J. A.; Nyholm, T. K. M. Curr. Opin. Struct. Biol. 2006, 16, 473
63. Daily, A. E.; Greathouse, D. V.; van der Wel, P. C. A.; Koeppe, R. E. I. Biophys. J. 2008, 94, 480
64. Andersen, O. S.; Koeppe, R. E. I. Annu. Rev. Biophys. Biomol. Struct. 2007, 36, 107
65. Szabo, G.; Urry, D. W. Science 1979, 203, 55
66. Nakajima, A. Bull. Chem. Soc. Jpn. 1973, 46, 1129
67. LoGrasso, P. V.; Moll, F., III; Cross, T. A. Biophys. J. 1988, 54, 259
68. Killian, J. A.; Nicholson, L. K.; Cross, T. A. Biochim. Biophys. Acta 1988, 943, 535
69. Marsh, D. Handbook of Lipid Bilayers; CRC Press: Boca Raton, FL, 1990.
70. Borbat, P. P.; Freed, J. H. Double-Quantum ESR and Distance Measurements. In Biological Magnetic Resonance; Berliner, L. J.; Eaton, G. R.; Eaton, S. S., Eds.; Academic/Plenum Publishers: New York, 2000; Vol. 19, p 383.