Development of STS markers and QTL validation for common bacterial blight resistance in common bean

Plant Breeding

Volumn 127, Issue 1, 2008, Pages 62-68

  Liu, S ^a   Yu, K ^a   Park, S J ^a  

^a HARROW RESEARCH AND DEVELOPMENT CENTRE   (Canada)

Author keywords

Common bacterial blight; Marker assisted selection; Phaseolus vulgaris; Quantitative trait loci; Sequence tagged site

Indexed keywords

BACTERIA (MICROORGANISMS); PHASEOLUS VULGARIS;

EID: 38349081037     PISSN: 01799541     EISSN: 14390523     Source Type: Journal    
DOI: 10.1111/j.1439-0523.2007.01423.x     Document Type: Article

References (48)

1. Bai, Y., T. E. Michaels K. P. Pauls, 1997 : Identification of RAPD markers linked to common bacterial blight resistance genes in Phaseolus vulgaris L. Genome 40, 544 551.
2. Beattie, A., T. E. Michaels K. P. Pauls, 1998 : An efficient, reliable method to screen for common bacterial blight resistance in Phaseolus vulgaris L. Annu. Rep. Bean Improv. Coop. 41, 53 54.
3. Blair, M. W., F. Pedraza, H. F. Buendia, E. Gaitán-Solís, S. E. Beebe, P. Gepts J. Tohme, 2003 : Development of a genome-wide anchored microsatellite map for common bean (Phaseolus vulgaris L.). Theor. Appl. Genet. 107, 1362 1374.
4. Broughton, W. J., G. Hernandez, M. W. Blair, S. E. Beebe, P. Gepts J. Y. Vanderleyden, 2003 : Beans (Phaseolus spp.) - model food legumes. Plant Soil 252, 55 128.
5. Churchill, G. A. R. W. Doerge, 1994 : Empirical threshold values for quantitative trait mapping. Genetics 138, 963 971.
6. Doerge, R. W. G. A. Churchill, 1996 : Permutation tests for multiple loci affecting a quantitative character. Genetics 142, 285 294.
7. Eskridge, K. M. D. P. Coyne, 1996 : Estimating and testing hypothesis about the number of genes using inbred-backcross data. J. Hered. 87, 410 412.
8. Fourie, D. L. Herselman, 2002 : Breeding for common blight resistance in dry beans in South Africa. Annu. Rep. Bean Improv. Coop. 45, 50 51.
9. Freyre, R., P. W. Skroch, V. Geffroy, A. F. Adam-Blondon, A. Shirmohamadali, W. C. Johnson, V. Llaca, R. O. Nodari, P. A. Pereira, S. M. Tsai, J. Tohme, M. Dron, J. Nienhuis, C. E. Vallejos P. Gepts, 1998 : Towards an integrated linkage map of common bean. 4. Development of a core linkage map and alignment of RFLP maps. Theor. Appl. Genet. 97, 847 856.
10. Gaitán-Solís, E., M. C. Duque, K. J. Edwards J. Tohme, 2002 : Microsatellite repeats in common bean (Phaseolus vulgaris), isolation, characterization, and cross-species amplification in Phaseolus spp. Crop Sci. 42, 2128 2136.
11. Haley, S. D., L. K. Afanador J. D. Kelly, 1994 : Selection for monogenic pest resistance traits with coupling- and repulsion-phase RAPD markers. Crop Sci. 34, 1061 1066.
12. Ibarra-Perez, F. J. J. D. Kelly, 2005 : Molecular Markers used to validate reaction of elite bean breeding lines to common bacterial blight. Annu. Rep. Bean Improv. Coop. 48, 98 99.
13. Inoue, H., H. Nojima H. Okayama, 1990 : High efficiency transformation of Escherichia coli with plasmids. Gene 96, 23 28.
14. Jung, G., P. W. Skroch, D. P. Coyne, J. Nienhuis, E. Arnaud-Santana, H. M. Ariyarathne, S. M. Kaeppler M. J. Bassett, 1997 : Molecular-markers-based genetic analysis of tepary bean-derived common bacterial blight resistance in different developmental stage of common bean. J. Am. Soc. Hortic. Sci. 122, 329 337.
15. Jung, G., P. W. Skroch, J. Nienhuis, D. P. Coyne, E. Arnaud-Santana, H. M. Ariyarathne J. M. Marita, 1999 : Confirmation of QTL associated with common bacterial blight resistance in four different genetic backgrounds in common bean. Crop Sci. 39, 1448 1455.
16. Kelly, J. D., P. Gepts, P. N. Miklas D. P. Coyne, 2003 : Tagging and mapping of genes and QTL and molecular marker-assisted selection for traits of economic importance in bean and cowpea. Field Crops Res. 8, 2135 2154.
17. Kosambi, D. D., 1944 : The estimation of map distance from recombinantion values. Ann. Eugen. 12, 172 175.
18. Lander, E. S., P. Green, J. Abrahamson, A. Barlow, M. J. Daly, S. E. Lincoln L. Newburg, 1987 : MAPMAKER, an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1, 174 181.
19. Larsen, R. C. P. N. Miklas, 2004 : Generation and molecular mapping of a SCAR marker linked with the Bct gene for resistance to beet curly top virus in common bean. Phytopathology 94, 320 325.
20. Liu, S., K. Yu, S. J. Park, R. L. Conner, P. Balasubramanian, H.-H. Mündel F. A. Kiehn, 2005 : Marker-assisted selection of common beans for multiple disease resistance. Annu. Rep. Bean Improv. Coop. 48, 82 83.
21. McClean, P. E., R. K. Lee, C. Otto, P. Gepts M. J. Bassett, 2002 : Molecular and phenotypic mapping of genes controlling seed coat pattern and color in common bean (Phaseolus vulgaris L.). J. Hered. 93, 148 152.
22. McElroy, J. B., 1985 : Breeding dry beans, Phaseolus coccineus Lam. For common bacterial blight resistance derived from Phaseolus acutifolius A. Gray. PhD Diss., Cornell Univ., Ithaca, NY, USA.
23. Michaels, T. E., T. H. Smith, J. Larsen, A. D. Beattie K. P. Pauls, 2006 : 'OAC Rex' common bean. Can. J. Plant Sci. 86, 733 736.
24. Michelmore, R. W., I. Paran R. V. Kesseli, 1991 : Identification of markers linked to disease resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl. Acad. Sci. U.S.A. 88, 9828 9832.
25. Miklas, P. N., J. R. Smith, R. Riley, K. F. Grafton, S. P. Singh, G. Jung D. P. Coyne, 2000 : Marker-assisted breeding for pyramided resistance to common bacterial blight in common bean. Annu. Rep. Bean Improv. Coop. 43, 39 40.
26. Miklas, P. N., D. P. Coyne, K. F. Grafton, N. Mutlu, J. Reiser, D. T. Lindgren S. P. Singh, 2003 : A major QTL for common bacterial blight resistance derives from the common bean great northern landrace cultivar Montana No. 5. Euphytica 131, 137 146.
27. Miklas, P. N., J. R. Smith S. P. Singh, 2006a : Registration of common bacterial blight resistant dark red kidney bean germplasms line USDK-CBB-15. Crop Sci. 46, 1005 1006.
28. Miklas, P. N., J. D. Kelly, S. E. Beebe M. W. Blair, 2006b : Common bean breeding for resistance against biotic and abiotic stresses: from classical to MAS breeding. Euphytica 147, 105 131.
29. Murray, J., J. Larsen, T. E. Michaels, A. Schaafsma, C. E. Vallejos K. P. Pauls, 2002 : Identification of putative genes in bean (Phaseolus vulgaris) genomic (Bng) RFLP clones and their conversion to STSs. Genome 45, 1013 1024.
30. Mutlu, N., P. N. Miklas, J. Reiser D. P. Coyne, 2005 : Backcross breeding for improved resistance to common bacterial blight in pinto bean (Phaseolus vulgaris L.). Plant Breeding 124, 282 287.
31. Park, S. J. B. N. Dhanvantari, 1987 : Transfer of common bacterial blight (Xanthomonas campestris pv phaseoli) resistance from Phaseolus coccineus Lam. to P. vulgaris L. through interspecific hybridization. Can. J. Plant Sci. 67, 685 695.
32. Park, S. J. B. N. Dhanvantari, 1994 : Registration of common bean blight-resistant germplasm, 'HR45'. Crop Sci. 34, 548.
33. Park, S. J. K. Yu, 2004 : Molecular marker-assisted selection techniques for gene pyramiding of multiple disease resistance in common bean: a plant breeder prospective. Annu. Rep. Bean Improv. Coop. 47, 73 74.
34. Pedrosa, A., C. E. Vallejos A. Bachmair, 2003 : Integration of common bean (Phaseolus vulgaris L.) linkage and chromosomal maps. Theor. Appl. Genet. 106, 205 212.
35. Sambrook, J., E. F. Fritsch T. Maniatis, 1989 : Molecular Cloning, a Laboratory Manual, 2nd edn, Vol. 3. Cold spring harbour laboratory press, Cold Spring Harbour, NY, USA.
36. SAS Institute, 1999 : SAS/STAT User's Guide, Version 8. SAS Institute Inc., Cary, NC, USA.
37. Silva, L. O., S. P. Sigh M. A. Pastor-Corrales, 1989 : Inheritance of resistance to bacterial blight in common bean. Theor. Appl. Genet. 78, 619 624.
38. Singh, S. P. C. G. Munoz, 1999 : Resistance to common bacterial blight among Phaseolus species and common bean improvement. Crop Sci. 39, 80 89.
39. Thomas, C. V. J. G. Waines, 1984 : Fertile backcross and allotetraploid plants from crosses between tepary bean and common bean. Heredity 75, 93 98.
40. Voorrips, R. E., 2002 : MapChart: software for the graphical presentation of linkage maps and QTL. J. Hered. 93, 77 78.
41. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. van de Lee, T. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper M. Zabeau, 1995 : AFLP: a new technique for DNA fingerprinting. Nucleic Acid Res. 23, 4407 4414.
42. Wang, S., C. J. Basten Z-B. Zeng, 2004 : Windows QTL Cartographer 2.0. Department of Statistics, North Carolina State University, Raleigh, NC (http://statgen.ncsu.edu/qtlcart/WQTLCart.htm).
43. Yu, Z. H., R. E. Stall C. E. Vallejos, 1998 : Detection of genes for resistance to common bacterial blight of beans. Crop Sci. 38, 1290 1296.
44. Yu, K., S. J. Park V. Poysa, 1999 : Abundance and variation of microsatellite DNA sequences in beans (Phaseolus and Vigna). Genome 42, 27 34.
45. Yu, K., S. J. Park V. Poysa, 2000a : Marker-assisted selection of common beans for resistance to common bacterial blight: efficacy and economics. Plant Breeding 119, 411 415.
46. Yu, K., S. J. Park, V. Poysa P. Gepts, 2000b : Integration of simple sequence repeat (SSR) markers into a molecular linkage map of common bean (Phaseolus vulgaris L.). J. Hered. 91, 429 434.
47. Yu, K., S. J. Park, B. Zhang, M. Haffner V. Poysa, 2004 : An SSR marker in the nitrate reductase gene of common bean is tightly linked to a major gene conferring resistance to common bacterial blight. Euphytica 138, 89 95.
48. Zeng, Z-B., 1994 : Precision mapping of quantitative trait loci. Genetics 136, 1457 1468.