The complete mitochondrial genome of Thrinchus schrenkii (Orthoptera: Caelifera, Acridoidea, Pamphagidae)

Molecular Biology Reports

Volumn 38, Issue 1, 2011, Pages 611-619

  Zhang, Daochuan ^a   Zhi, Yongchao ^a   Yin, Hong ^a   Li, Xinjiang ^a   Yin, Xiangchu ^a,b  

^a HEBEI UNIVERSITY   (China)

^b SHANDONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

Acridoidea; Mitochondrial DNA; Orthoptera; Pamphagidae; Thrinchus schrenkii

Indexed keywords

CYTOCHROME C OXIDASE; MITOCHONDRIAL DNA; TRANSFER RNA;

AGN GENE; ARTICLE; GENE; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENETIC CONSERVATION; GENETIC ORGANIZATION; INSECT GENOME; MITOCHONDRIAL GENOME; ND5 GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOPTERA; PROTEIN TERTIARY STRUCTURE; SEQUENCE HOMOLOGY; STOP CODON; STRUCTURAL GENOMICS; THRINCHUS SCHRENKII;

ANIMALS; AT RICH SEQUENCE; BASE COMPOSITION; BASE SEQUENCE; CHROMOSOME MAPPING; CODON; GENES, INSECT; GENES, MITOCHONDRIAL; GENOME, INSECT; GENOME, MITOCHONDRIAL; GRASSHOPPERS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; OPEN READING FRAMES; RNA, RIBOSOMAL; RNA, TRANSFER;

ACRIDOIDEA; CAELIFERA; ORTHOPTERA; PAMPHAGIDAE;

EID: 78651078120     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-010-0147-6     Document Type: Article

References (40)

1. Eades DC, Otte D (2009) Orthoptera species file online. Version 2.0/3.5. http://Orthoptera.SpeciesFile.org. Accessed 2 November 2009
2. Dirsh VM (1975) Classification of the Acridomorphoid insects. E.W. Classey Ltd., Farringdon, Oxford, pp 1-171
3. XC Yin 1982 On the taxonomic system of Acridoidea from China Acta Biologica Plateau Sinica 1 69 99
4. PK Flook CHF Rowell 1997 The phylogeny of the Caelifera (Insecta, Orthoptera) as deduced from mitochondrial rRNA gene sequences Mol Phylogenet Evol 8 89 103 1:CAS:528:DyaK2sXltlWktbc%3D 10.1006/mpev.1997.0412 9242597 (Pubitemid 127345904)
5. PK Flook S Klee CHF Rowell 1999 A combined molecular phylogenetic analysis of the Orthoptera and its implications for their higher systematics Syst Biol 48 233 253 1:STN:280:DC%2BD38zitlegsQ%3D%3D 10.1080/106351599260274 12066707
6. H Yin DC Zhang ZL Bi Z Yin Y Liu XC Yin 2003 Molecular phylogeny of some species of the Acridoidea based on 16S rDNA Acta Genetica Sinica 30 8 766 772 1:CAS:528:DC%2BD2MXisV2ltLw%3D 14682247
7. H Yin XJ Li WQ Wang XC Yin 2004 Inferences about Acridoidea phylogenetic relationships from small subunit nuclear ribosomal DNA sequence Acta Entomologica Sinica 47 6 809 814 1:CAS:528:DC%2BD2MXis1egsro%3D
8. DC Zhang XJ Li WQ Wang H Yin Z Yin XC Yin 2005 Molecular phylogeny of some genera of Pamphagidae (Acridoidea, Orthoptera) from China based on mitochondrial 16S rDNA sequences Zootaxa 1103 41 49
9. VM Dirsh 1961 A preliminary revision of the families and subfamilies of Acridoidea (Orthoptera) Bull Br Mus (Nat Hist) 10 9 372 377
10. DC Zhang H Yin XC Yin 2003 On the taxonomic system of Eurasian Pamphagidae (Orthoptera:Caelifera) Acta Entomologica Sinica 46 20 218 221
11. DR Wolstenholme 1992 Animal mitochondrial DNA: structure and evolution Int Rev Cytol 141 173 216 1:CAS:528:DyaK3sXkt1Wgs78%3D 10.1016/S0074-7696(08) 62066-5 1452431
12. JL Boore 1999 Animal mitochondrial genomes Nucleic Acids Res 27 1767 1780 10.1093/nar/27.8.1767 1:CAS:528:DyaK1MXivVersbo%3D 10.1093/nar/27.8.1767 10101183 (Pubitemid 29209617)
13. PK Flook CH Rowell G Gellissen 1995 The sequence, organization, and evolution of the Locusta migratoria mitochondrial genome J Mol Evol 41 928 941 10.1007/BF00173173 1:CAS:528:DyaK28XivFOhsg%3D%3D 10.1007/BF00173173 8587138
14. CY Zhang Y Hang 2008 Complete mitochondrial genome of Oxya chinensis (Orthoptera, Acridoidea) Acta Biochim Biophys Sin 40 7 18 10.1111/j.1745-7270. 2008.00375.x 1:CAS:528:DC%2BD1cXitFKiu7o%3D 18180849
15. Y Liu Y Huang 2008 Sequencing and analysis of complete mitochondrial genome of Chorthippus chinensis Tarb Chin J Biochem Mol Biol 24 329 335 1:CAS:528:DC%2BD1cXmtFCmu7w%3D
16. JD Fenn H Song SL Cameron MF Whiting 2008 A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data Mol Phylogenet Evol 49 59 68 10.1016/j.ympev.2008.07.004 1:CAS:528:DC%2BD1cXhtFOltrvN 10.1016/j.ympev.2008.07.004 18672078
17. H Shi Y Huang 2008 The mitochondrial genome of Phlaeoba albonema Zheng Chin J Biochem Mol Biol 24 604 611 1:CAS:528:DC%2BD1cXhtVGqsrfJ
18. Xiao LL, Zhou ZJ, Huang Y (2007) The mitochondrial genome of Locusta migratoria migratoria (Orthoptera: Oedipodidae) contains three tRNA-like sequences on the N-strand. www.ncbi.nlm.nih.gov/nuccore/NC-011119. Accessed 6 August 2008
19. C Ma C Liu P Yang L Kang 2009 The complete mitochondrial genomes of two band-winged grasshoppers, Gastrimargus marmoratus and Oedaleus asiaticus BMC Genomics 10 156 10.1186/1471-2164-10-156 10.1186/1471-2164-10-156 19361334
20. Erle S, Moritz RFA, Kaatz HH, Ferenz, HJ (2009) Analysis of the mitochondrial genome of Schistocerca gregaria gregaria (Orthoptera: Acrididae). http://www.ncbi.nlm.nih.gov/nuccore/NC-013240. Accessed 18 September 2009
21. FM Ding HW Shi Y Huang 2007 Complete mitochondrial genome and secondary structures of lrRNA and srRNA of Atractomorpha sinensis (Orthoptera, Pyrgomorphidae) Zool Res 6 580 588
22. Yin XC, Shi JP, Yin Z (1996) A synonymic catalogue of grasshoppers and their allies of the world. Chinese Forestry Publishing House Press, Beijing, pp 701-702
23. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbour Laboratory Press, New York
24. JK Bonfield KF Smith R Staden 1995 A new DNA sequence assembly program Nucleic Acids Res 24 4992 4999 10.1093/nar/23.24.4992
25. TM Lowe SR Eddy 1997 tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence Nucleic Acids Res 25 955 964 10.1093/nar/25.5.955 1:CAS:528:DyaK2sXhvVahtrk%3D 10.1093/nar/25.5.955 9023104 (Pubitemid 27298263)
26. R Chenna H Sugawara T Koike R Lopez TJ Gibson DG Higgins JD Thompson 2003 Multiple sequence alignment with the Clustal series of programs Nucleic Acids Res 31 3497 3500 10.1093/nar/gkg500 1:CAS:528:DC%2BD3sXltVWjsrg%3D 10.1093/nar/gkg500 12824352 (Pubitemid 37442184)
27. DL Lewis CL Farr LS Kaguni 1995 Drosophila melanogaster mitochondrial DNA, completion of the nucleotide sequence and evolutionary comparisons Insect Mol Biol 4 263 278 1:CAS:528:DyaK2MXhtVSitLrM 10.1111/j.1365-2583.1995.tb00032.x 8825764
28. JWO Ballard 2000 Comparative genomics of mitochondrial DNA in members of the Drosophila melanogaster subgroup J Mol Evol 51 48 63 10.1007/s002390010066 1:CAS:528:DC%2BD3cXlslyls7s%3D 10903372
29. AC Lessinger JAC Martins TA Lemos EL Kemper FR da Silva AL Vettore P Arruda AM Azeredo-Espin 2000 The mitochondrial genome of the primary screwworm fly Cochliomyia hominivorax (Diptera: Calliphoridae) Insect Mol Biol 9 521 529 10.1046/j.1365-2583.2000.00215.x 1:CAS:528:DC%2BD3cXot1GksLw%3D 10.1046/j.1365-2583.2000.00215.x 11029671
30. L Spanos G Koutoumbas M Kosyfakis C Louis 2000 The mitochondrial genome of the Mediterranean fruitfly, Ceratitis capitata Insect Mol Biol 9 139 144 10.1046/j.1365-2583.2000.00165.x 1:CAS:528:DC%2BD3cXjsF2htL8%3D 10.1046/j.1365-2583.2000.00165.x 10762421 (Pubitemid 30236611)
31. JB Stewart AT Beckenbach 2003 Phylogenetic and genomic analysis of the complete mitochondrial DNA sequence of the spotted asparagus beetle Crioceris duodecimpunctata Mol Phylogenet Evol 26 513 526 10.1016/S1055-7903(02)00421-9 1:CAS:528:DC%2BD3sXitVKntLc%3D 10.1016/S1055-7903(02)00421-9 12644408 (Pubitemid 36386506)
32. JS Bae I Kim HD Sohn BR Jin 2004 The mitochondrial genome of the firefly, Pyrocoelia rufa: complete DNA sequence, genome organization, and phylogenetic analysis with other insects Mol Phylogenet Evol 32 978 985 10.1016/j.ympev.2004. 03.009 1:CAS:528:DC%2BD2cXmt1CntLg%3D 10.1016/j.ympev.2004.03.009 15288070 (Pubitemid 39033550)
33. EM Dotson CB Beard 2001 Sequence and organization of the mitochondrial genome of the Chagas disease vector, Triatoma dimidiata Insect Mol Biol 10 205 215 10.1046/j.1365-2583.2001.00258.x 1:CAS:528:DC%2BD3MXlt1ahtbc%3D 10.1046/j.1365-2583.2001.00258.x 11437912 (Pubitemid 32602225)
34. F Nardi G Spinsanti JL Boore A Carapelli R Dallai F Frati 2003 Hexapod origins: monophyletic or paraphyletic? Science 299 1887 1889 10.1126/science.1078607 1:CAS:528:DC%2BD3sXitFKlu7c%3D 10.1126/science.1078607 12649480 (Pubitemid 36356656)
35. A Reyes C Gissi G Pesole C Saccone 1998 Asymmetrical directional mutation pressure in the mitochondrial genome of mammals Mol Biol Evol 15 957 966 1:CAS:528:DyaK1cXlt1ejsLk%3D 9718723
36. MS Caterino FA Sperling 1999 Papilio phylogeny based on mitochondrial cytochrome oxidase I and II genes Mol Phylogenet Evol 11 122 137 10.1006/mpev.1998.0549 1:CAS:528:DyaK1MXhvVGgsrw%3D 10.1006/mpev.1998.0549 10082616 (Pubitemid 129499257)
37. K Iksoo YC So HY Myung SH Jae ML Sang DS Hung RJ Byung 2005 The complete nucleotide sequence and gene organization of the mitochondrial genome of the oriental mole cricket, Gryllotalpa orientalis (Orthoptera: Gryllotalpidae) Gene 353 155 168 10.1016/j.gene.2005.04.019 10.1016/j.gene.2005.04.019 (Pubitemid 40942138)
38. S Anderson AT Bankier BG Barrell MH Bruijn AR Coulson J Drouin IC Eperon 1981 Sequence and organization of the human mitochondrial genome Nature 290 457 465 10.1038/290457a0 1:CAS:528:DyaL3MXlt1OlsL8%3D 10.1038/290457a0 7219534 (Pubitemid 11159074)
39. S Steinberg F Leclerc R Cedergren 1997 Structural rules and conformational compensations in the tRNA L-form J Mol Biol 266 269 282 10.1006/jmbi.1996.0803 1:CAS:528:DyaK2sXhs1GmsLg%3D 10.1006/jmbi.1996.0803 9047362 (Pubitemid 27171013)
40. EI Zagryadskaya N Kotlova SV Steinberg 2004 Key elements in maintenance of the tRNA L-shape J Mol Biol 340 435 444 10.1016/j.jmb.2004.05.002 1:CAS:528:DC%2BD2cXltVCru74%3D 10.1016/j.jmb.2004.05.002 15210345 (Pubitemid 38797991)