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Volumn 110, Issue 2, 2011, Pages 499-512

Exploring suppression subtractive hybridization (SSH) for discriminating Lactococcus lactis ssp. cremoris SK11 and ATCC 19257 in mixed culture based on the expression of strain-specific genes

Author keywords

Biomarkers; Gene expression; Genotyping; Lactococcus lactis ssp. cremoris; SSH

Indexed keywords

POLYMERASE CHAIN REACTION; TRANSCRIPTION;

EID: 78650982654     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2010.04902.x     Document Type: Article
Times cited : (6)

References (44)
  • 1
    • 0036951730 scopus 로고    scopus 로고
    • Novel food-grade plasmid vector based melibiose fermentation for the genetic engineering of Lactococcus lactis
    • Boucher, I., Parrot, M., Gaudreau, H., Champagne, C.P., Vadeboncoeur, C. and Moineau, S. (2002) Novel food-grade plasmid vector based melibiose fermentation for the genetic engineering of Lactococcus lactis. Appl Environ Microbiol 68, 6152-6161.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 6152-6161
    • Boucher, I.1    Parrot, M.2    Gaudreau, H.3    Champagne, C.P.4    Vadeboncoeur, C.5    Moineau, S.6
  • 2
    • 0031766710 scopus 로고    scopus 로고
    • Autolysis of Lactococcus lactis is influenced by proteolysis
    • Buist, G., Venema, G. and Kok, J. (1998) Autolysis of Lactococcus lactis is influenced by proteolysis. J Bacteriol 180, 5947-5953.
    • (1998) J Bacteriol , vol.180 , pp. 5947-5953
    • Buist, G.1    Venema, G.2    Kok, J.3
  • 3
    • 67650161493 scopus 로고    scopus 로고
    • Suppression subtractive hybridisation allows selective sampling of metagenomic subsets of interest
    • Chew, Y.V. and Holmes, A.J. (2009) Suppression subtractive hybridisation allows selective sampling of metagenomic subsets of interest. J Microbiol Methods 78, 136-143.
    • (2009) J Microbiol Methods , vol.78 , pp. 136-143
    • Chew, Y.V.1    Holmes, A.J.2
  • 4
    • 0001028399 scopus 로고
    • Production of cheddar cheese using a Lactococcus lactis ssp. cremoris SK11 derivative with enhanced aminopeptidase activity
    • Christensen, J.E., Jonhson, M.E. and Steele, J.L. (1995) Production of cheddar cheese using a Lactococcus lactis ssp. cremoris SK11 derivative with enhanced aminopeptidase activity. Int Dairy J 5, 367-379.
    • (1995) Int Dairy J , vol.5 , pp. 367-379
    • Christensen, J.E.1    Jonhson, M.E.2    Steele, J.L.3
  • 5
    • 32044467939 scopus 로고    scopus 로고
    • Identification and molecular characterization of the chromosomal exopolysaccharide biosynthesis gene cluster from Lactococcus lactis subsp. cremoris SMQ-461
    • Dabour, N. and LaPointe, G. (2005) Identification and molecular characterization of the chromosomal exopolysaccharide biosynthesis gene cluster from Lactococcus lactis subsp. cremoris SMQ-461. Appl Environ Microbiol 71, 7414-7425.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 7414-7425
    • Dabour, N.1    LaPointe, G.2
  • 6
    • 37849046638 scopus 로고    scopus 로고
    • Prokaryotic suppression subtractive hybridization PCR cDNA subtraction, a targeted method to identify differentially expressed genes
    • De Long, S.K., Kinney, K.A. and Kirisitis, M.J. (2008) Prokaryotic suppression subtractive hybridization PCR cDNA subtraction, a targeted method to identify differentially expressed genes. Appl Environ Microbiol 74, 225-232.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 225-232
    • De Long, S.K.1    Kinney, K.A.2    Kirisitis, M.J.3
  • 7
    • 38849143916 scopus 로고    scopus 로고
    • Genome comparison of Bifidobacterium longum strains NCC2705 and CRC-002 using suppression subtractive hybridization
    • Delcenserie, V., Lessard, M.H., LaPointe, G. and Roy, D. (2008) Genome comparison of Bifidobacterium longum strains NCC2705 and CRC-002 using suppression subtractive hybridization. FEMS Microbiol Lett 280, 50-56.
    • (2008) FEMS Microbiol Lett , vol.280 , pp. 50-56
    • Delcenserie, V.1    Lessard, M.H.2    LaPointe, G.3    Roy, D.4
  • 8
    • 15844428981 scopus 로고    scopus 로고
    • Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries
    • Diatchenko, L., Lau, C.Y.F., Campbell, A.P., Chenchik, A., Moqadam, F., Huang, B., Lukanov, S., Lukanov, K. et al. (1996) Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc Natl Acad Sci USA 93, 6025-6030.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 6025-6030
    • Diatchenko, L.1    Lau, C.Y.F.2    Campbell, A.P.3    Chenchik, A.4    Moqadam, F.5    Huang, B.6    Lukanov, S.7    Lukanov, K.8
  • 10
    • 0025087747 scopus 로고
    • Differences in short peptide-substrate cleavage by two cell-envelope-located serine proteinase of Lactococcus lactis subsp. cremoris are related to secondary binding specificity
    • Exterkate, F.A. (1990) Differences in short peptide-substrate cleavage by two cell-envelope-located serine proteinase of Lactococcus lactis subsp. cremoris are related to secondary binding specificity. Appl Microbiol Biotechnol 33, 401-406.
    • (1990) Appl Microbiol Biotechnol , vol.33 , pp. 401-406
    • Exterkate, F.A.1
  • 11
    • 0001223702 scopus 로고
    • The lactococcal cell envelope proteinases: differences, calcium-binding effects and role in cheese ripening
    • Exterkate, F.A. (1995) The lactococcal cell envelope proteinases: differences, calcium-binding effects and role in cheese ripening. Int Dairy J 5, 95-1018.
    • (1995) Int Dairy J , vol.5 , pp. 95-1018
    • Exterkate, F.A.1
  • 12
    • 0027441754 scopus 로고
    • Diversity of cell envelope proteinase specificity among strains of Lactococcus lactis and its relationship to charge characteristics of the substrate-binding region
    • Exterkate, F.A., Alting, A.C. and Bruinenberg, P.G. (1993) Diversity of cell envelope proteinase specificity among strains of Lactococcus lactis and its relationship to charge characteristics of the substrate-binding region. Appl Environ Microbiol 59, 3640-3647.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 3640-3647
    • Exterkate, F.A.1    Alting, A.C.2    Bruinenberg, P.G.3
  • 13
    • 2942590260 scopus 로고    scopus 로고
    • Establishment of a Real-Time PCR-based approach for accurate quantification of bacterial RNA targets in water, using Salmonella as a model organism
    • Fey, A., Eichler, S., Flavier, S., Christen, R., Hofle, M.G. and Guzman, C.A. (2004) Establishment of a Real-Time PCR-based approach for accurate quantification of bacterial RNA targets in water, using Salmonella as a model organism. Appl Environ Microbiol 70, 3618-3623.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3618-3623
    • Fey, A.1    Eichler, S.2    Flavier, S.3    Christen, R.4    Hofle, M.G.5    Guzman, C.A.6
  • 14
    • 0030977548 scopus 로고    scopus 로고
    • Interaction between proteolytic strains of Lactococcus lactis influenced by different types of proteinase during growth in milk
    • Flambard, B., Richard, J. and Juillard, V. (1997) Interaction between proteolytic strains of Lactococcus lactis influenced by different types of proteinase during growth in milk. Appl Environ Microbiol 63, 2131-2135.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2131-2135
    • Flambard, B.1    Richard, J.2    Juillard, V.3
  • 15
    • 0032881774 scopus 로고    scopus 로고
    • Bacteriophage defence systems in lactic acid bacteria
    • Forde, A. and Fitzgerald, G.F. (1999) Bacteriophage defence systems in lactic acid bacteria. Antonie Van Leeuwenhoek 76, 89-113.
    • (1999) Antonie Van Leeuwenhoek , vol.76 , pp. 89-113
    • Forde, A.1    Fitzgerald, G.F.2
  • 16
    • 4344701189 scopus 로고    scopus 로고
    • Suppressive subtractive hybridization as a tool for identifying genetic diversity in an environmental metagenome: the rumen as a model
    • Galbraith, E.A., Antonopoulos, D.A. and White, B.A. (2004) Suppressive subtractive hybridization as a tool for identifying genetic diversity in an environmental metagenome: the rumen as a model. Environ Microbiol 6, 928-937.
    • (2004) Environ Microbiol , vol.6 , pp. 928-937
    • Galbraith, E.A.1    Antonopoulos, D.A.2    White, B.A.3
  • 17
    • 52049090834 scopus 로고    scopus 로고
    • Application of suppressive subtractive hybridization to uncover the metagenomic diversity of environmental samples
    • Galbraith, E.A., Antonopoulos, D.A. and White, B.A. (2008) Application of suppressive subtractive hybridization to uncover the metagenomic diversity of environmental samples. Methods Mol Biol 410, 295-333.
    • (2008) Methods Mol Biol , vol.410 , pp. 295-333
    • Galbraith, E.A.1    Antonopoulos, D.A.2    White, B.A.3
  • 18
    • 0029905823 scopus 로고    scopus 로고
    • Lytic systems in lactic acid bacteria and their bacteriophages
    • Gasson, M.J. (1996) Lytic systems in lactic acid bacteria and their bacteriophages. Antonie Van Leeuwenhoek 70, 147-159.
    • (1996) Antonie Van Leeuwenhoek , vol.70 , pp. 147-159
    • Gasson, M.J.1
  • 19
    • 46949104466 scopus 로고    scopus 로고
    • Molecular Techniques in the Microbial Ecology of Fermented Foods
    • In, ed. Cocolin, L. and, Ercolini, D., New York: Springer Science.
    • Giraffa, G. and Carminati, D. (2008) Molecular techniques in food fermentation: principles and applications. In Molecular Techniques in the Microbial Ecology of Fermented Foods ed. Cocolin, L. and Ercolini, D. pp. 1-30. New York: Springer Science.
    • (2008) Molecular techniques in food fermentation: principles and applications , pp. 1-30
    • Giraffa, G.1    Carminati, D.2
  • 20
    • 12144269208 scopus 로고    scopus 로고
    • Quantification by real-time PCR of Lactococcus lactis subsp. cremoris in milk fermented by a mixed culture
    • Grattepanche, F., Lacroix, C., Audet, P. and LaPointe, G. (2005) Quantification by real-time PCR of Lactococcus lactis subsp. cremoris in milk fermented by a mixed culture. Appl Microbiol Biotechnol 66, 414-421.
    • (2005) Appl Microbiol Biotechnol , vol.66 , pp. 414-421
    • Grattepanche, F.1    Lacroix, C.2    Audet, P.3    LaPointe, G.4
  • 21
    • 0034980991 scopus 로고    scopus 로고
    • Transcriptional pattern of genes coding for the proteolic system of Lactococcus lactis and evidence for coordinated regulation of key enzymes by peptide supply
    • Guédon, E., Renault, P., Ehrlich, S.D. and Delorme, C. (2001) Transcriptional pattern of genes coding for the proteolic system of Lactococcus lactis and evidence for coordinated regulation of key enzymes by peptide supply. J Bacteriol 183, 3614-3622.
    • (2001) J Bacteriol , vol.183 , pp. 3614-3622
    • Guédon, E.1    Renault, P.2    Ehrlich, S.D.3    Delorme, C.4
  • 22
    • 10344227692 scopus 로고    scopus 로고
    • Metagenomics: application of genomics to uncultured microorganisms
    • Handelsman, J. (2004) Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 68, 669-685.
    • (2004) Microbiol Mol Biol Rev , vol.68 , pp. 669-685
    • Handelsman, J.1
  • 23
    • 34548364044 scopus 로고    scopus 로고
    • Suppression Subtractive Hybridization (SSH) and its modifications in microbiological research
    • Huang, X., Li, Y., Niu, Q. and Zhang, K. (2007) Suppression Subtractive Hybridization (SSH) and its modifications in microbiological research. Appl Microbiol Biotechnol 76, 753-760.
    • (2007) Appl Microbiol Biotechnol , vol.76 , pp. 753-760
    • Huang, X.1    Li, Y.2    Niu, Q.3    Zhang, K.4
  • 24
    • 40549134926 scopus 로고    scopus 로고
    • Glycosyltransferase: a specific marker for the discrimination of Bacillus anthracis from the Bacillus cereus group
    • Kim, W., Kim, J.Y., Cho, S.L., Nam, S.W., Shin, J.W., Kim, Y.S. and Shin, H.S. (2008) Glycosyltransferase: a specific marker for the discrimination of Bacillus anthracis from the Bacillus cereus group. J Med Microbiol 57, 279-286.
    • (2008) J Med Microbiol , vol.57 , pp. 279-286
    • Kim, W.1    Kim, J.Y.2    Cho, S.L.3    Nam, S.W.4    Shin, J.W.5    Kim, Y.S.6    Shin, H.S.7
  • 26
    • 0028985665 scopus 로고
    • Transport of beta-casein-derived peptides by the oligopeptide transport system is a crucial step in the proteolytic pathway of Lactococcus lactis
    • Kunji, E.R., Hagting, A., De Vries, C.J., Juillard, V., Haandrikman, A.J., Poolman, B. and Konings, W.N. (1995) Transport of beta-casein-derived peptides by the oligopeptide transport system is a crucial step in the proteolytic pathway of Lactococcus lactis. J Biol Chem 270, 1569-1574.
    • (1995) J Biol Chem , vol.270 , pp. 1569-1574
    • Kunji, E.R.1    Hagting, A.2    De Vries, C.J.3    Juillard, V.4    Haandrikman, A.J.5    Poolman, B.6    Konings, W.N.7
  • 27
    • 1542476032 scopus 로고    scopus 로고
    • Removal of bitterness from the bitter peptides extracted from Cheddar cheese with peptidases from Lactococcus lactis subsp. cremoris 515 SK11
    • Lee, K.D., Lo, C.G. and Warthesen, J.J. (1996) Removal of bitterness from the bitter peptides extracted from Cheddar cheese with peptidases from Lactococcus lactis subsp. cremoris 515 SK11. J Dairy Sci 79, 1521-1528.
    • (1996) J Dairy Sci , vol.79 , pp. 1521-1528
    • Lee, K.D.1    Lo, C.G.2    Warthesen, J.J.3
  • 29
    • 0029076810 scopus 로고
    • Medium-dependent regulation of proteinase gene expression in Lactococcus lactis: control of transcription initiation by specific dipeptides
    • Marugg, J.D., Meijer, W., van Kranenburg, R., Laverman, P., Bruinenberg, P.G. and de Vos, W.M. (1995) Medium-dependent regulation of proteinase gene expression in Lactococcus lactis: control of transcription initiation by specific dipeptides. J Bacteriol 177, 2982-2989.
    • (1995) J Bacteriol , vol.177 , pp. 2982-2989
    • Marugg, J.D.1    Meijer, W.2    van Kranenburg, R.3    Laverman, P.4    Bruinenberg, P.G.5    de Vos, W.M.6
  • 30
    • 0028200505 scopus 로고
    • Evolution of a lytic bacteriophage 1310 via DNA acquisition from the Lactococcus lactis chromosome
    • Moineau, S., Pandian, S. and Klaenhammer, T.R. (1994) Evolution of a lytic bacteriophage 1310 via DNA acquisition from the Lactococcus lactis chromosome. Appl Environ Microbiol 60, 1832-1841.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 1832-1841
    • Moineau, S.1    Pandian, S.2    Klaenhammer, T.R.3
  • 31
    • 0043031138 scopus 로고    scopus 로고
    • Real-time PCR detection of Brucella abortus: a comparative study of Sybr Green 1,5'-Exonuclease and hybridization probe assays
    • Newby, D.T., Hadfield, T.L. and Roberto, F.F. (2003) Real-time PCR detection of Brucella abortus: a comparative study of Sybr Green 1, 5'-Exonuclease and hybridization probe assays. Appl Environ Microbiol 60, 4753-4759.
    • (2003) Appl Environ Microbiol , vol.60 , pp. 4753-4759
    • Newby, D.T.1    Hadfield, T.L.2    Roberto, F.F.3
  • 33
    • 0025727560 scopus 로고
    • Identification, DNA sequence, and distribution of IS981, a new, high-copy-number insertion sequence in lactococci
    • Polzin, K.M. and McKay, L.L. (1991) Identification, DNA sequence, and distribution of IS981, a new, high-copy-number insertion sequence in lactococci. Appl Environ Microbiol 57, 734-743.
    • (1991) Appl Environ Microbiol , vol.57 , pp. 734-743
    • Polzin, K.M.1    McKay, L.L.2
  • 34
    • 78650971018 scopus 로고    scopus 로고
    • Aging at the Molecular Level
    • In, ed. von Zglinicki, T., Dordrecht: Kluwer Academic Publishers.
    • Rattan, S.I.S. (2003) Transcriptional and translational dysregulation during aging. In Aging at the Molecular Level ed. von Zglinicki, T. pp. 179-191. Dordrecht: Kluwer Academic Publishers.
    • (2003) Transcriptional and translational dysregulation during aging , pp. 179-191
    • Rattan, S.I.S.1
  • 35
    • 33750729203 scopus 로고    scopus 로고
    • Theories of biological aging: genes, proteins, and free radicals
    • Rattan, S.I.S. (2006) Theories of biological aging: genes, proteins, and free radicals. Free Radic Res 40, 1230-1238.
    • (2006) Free Radic Res , vol.40 , pp. 1230-1238
    • Rattan, S.I.S.1
  • 36
    • 0027355164 scopus 로고
    • Transposable elements in Lactococci: a review
    • Romero, D.A. and Klaenhammer, T.R. (1993) Transposable elements in Lactococci: a review. J Dairy Sci 76, 1-19.
    • (1993) J Dairy Sci , vol.76 , pp. 1-19
    • Romero, D.A.1    Klaenhammer, T.R.2
  • 37
    • 29144536283 scopus 로고    scopus 로고
    • Complete sequences of four plasmids of Lactococcus lactis subsp. cremoris SK11 reveal extensive adaptation to the dairy environment
    • Siezen, R.J., Renckens, B., van Swam, I., Peters, S., van Kranenburg, R., Kleerebezem, M. and de Vos, W.M. (2005) Complete sequences of four plasmids of Lactococcus lactis subsp. cremoris SK11 reveal extensive adaptation to the dairy environment. Appl Environ Microbiol 71, 8371-8382.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8371-8382
    • Siezen, R.J.1    Renckens, B.2    van Swam, I.3    Peters, S.4    van Kranenburg, R.5    Kleerebezem, M.6    de Vos, W.M.7
  • 38
    • 57449118500 scopus 로고    scopus 로고
    • Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology
    • Smith, C.J. and Osborn, A.M. (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiol Ecol 67, 6-20.
    • (2009) FEMS Microbiol Ecol , vol.67 , pp. 6-20
    • Smith, C.J.1    Osborn, A.M.2
  • 39
    • 33645461250 scopus 로고    scopus 로고
    • Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples
    • Smith, C.J., Nedwell, D.B., Dong, L.F. and Osborn, A.M. (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environ Microbiol 8, 804-815.
    • (2006) Environ Microbiol , vol.8 , pp. 804-815
    • Smith, C.J.1    Nedwell, D.B.2    Dong, L.F.3    Osborn, A.M.4
  • 40
    • 85153254128 scopus 로고
    • Handbook of Phycological Methods: Physiological and Biochemical Methods
    • UK: Phycological Society of America, Cambridge University Press.
    • Stein-Taylor, J.R., Hellebust, J.A., Craigie, J.S. and Gantt, E. (1973) Handbook of Phycological Methods: Physiological and Biochemical Methods. UK: Phycological Society of America, Cambridge University Press.
    • (1973)
    • Stein-Taylor, J.R.1    Hellebust, J.A.2    Craigie, J.S.3    Gantt, E.4
  • 41
    • 0028235621 scopus 로고
    • Cloning, sequencing and comparison of three lactococcal L-lactate dehydrogenase genes
    • Swindell, S.R., Griffin, H.G. and Gasson, M.J. (1994) Cloning, sequencing and comparison of three lactococcal L-lactate dehydrogenase genes. Microbiology 140, 1301-1305.
    • (1994) Microbiology , vol.140 , pp. 1301-1305
    • Swindell, S.R.1    Griffin, H.G.2    Gasson, M.J.3
  • 42
    • 77958497076 scopus 로고    scopus 로고
    • Evaluation of the genetic polymorphism among Lactococcus lactis subsp. cremoris strains using comparative genomic hybridization and multilocus sequence analysis
    • Taïbi, A., Dabour, N., Lamoureux, M., Roy, D. and LaPointe, G. (2010) Evaluation of the genetic polymorphism among Lactococcus lactis subsp. cremoris strains using comparative genomic hybridization and multilocus sequence analysis. Int J Food Microbiol 144, 20-28.
    • (2010) Int J Food Microbiol , vol.144 , pp. 20-28
    • Taïbi, A.1    Dabour, N.2    Lamoureux, M.3    Roy, D.4    LaPointe, G.5
  • 44
    • 0028600607 scopus 로고
    • Utilization of cheddar cheese containing nisin as an antimicrobial agent in other foods
    • Zottola, E.A., Yezzi, T.L., Ajao, D.B. and Roberts, R.F. (1994) Utilization of cheddar cheese containing nisin as an antimicrobial agent in other foods. Int J Food Microbiol 24, 227-238.
    • (1994) Int J Food Microbiol , vol.24 , pp. 227-238
    • Zottola, E.A.1    Yezzi, T.L.2    Ajao, D.B.3    Roberts, R.F.4


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