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Volumn 291, Issue 1, 2011, Pages 117-131

Phylogeny and genetic diversity of D-genome species of Aegilops and Triticum (Triticeae, Poaceae) from Iran based on microsatellites, ITS, and trnL-F

Author keywords

Chloroplast trnL F; D genome; Evolution; Internal transcribed spacer (ITS); Microsatellite (SSR); Systematics

Indexed keywords

AEGILOPS; AEGILOPS TAUSCHII; AMBLYOPYRUM MUTICUM; POACEAE; TRITICEAE; TRITICUM; TRITICUM AESTIVUM;

EID: 78650940923     PISSN: 03782697     EISSN: 16156110     Source Type: Journal    
DOI: 10.1007/s00606-010-0375-1     Document Type: Article
Times cited : (26)

References (59)
  • 1
    • 0344613211 scopus 로고    scopus 로고
    • Ribosomal ITS sequences and plant phylogenetic inference
    • Alvarez I, Wendel JF (2003) Ribosomal ITS sequences and plant phylogenetic inference. Mol Phylogenet Evol 29: 417-434.
    • (2003) Mol Phylogenet Evol , vol.29 , pp. 417-434
    • Alvarez, I.1    Wendel, J.F.2
  • 2
    • 0000281577 scopus 로고    scopus 로고
    • Genome differentiation in Aegilops. 1. Distribution of highly repetitive DNA sequences on chromosomes of diploid species
    • Badaeva ED, Friebe B, Gill BS (1996) Genome differentiation in Aegilops. 1. Distribution of highly repetitive DNA sequences on chromosomes of diploid species. Genome 39: 293-306.
    • (1996) Genome , vol.39 , pp. 293-306
    • Badaeva, E.D.1    Friebe, B.2    Gill, B.S.3
  • 4
    • 68049131208 scopus 로고    scopus 로고
    • Phylogenetic relationships among diploid Aegilops species inferred from 5S rDNA units
    • Baum BR, Edwards T, Johnson DA (2009) Phylogenetic relationships among diploid Aegilops species inferred from 5S rDNA units. Mol Phylogenet Evol 53: 34-44.
    • (2009) Mol Phylogenet Evol , vol.53 , pp. 34-44
    • Baum, B.R.1    Edwards, T.2    Johnson, D.A.3
  • 5
    • 0032762045 scopus 로고    scopus 로고
    • Direct amplification of the entire ITS region from poorly preserved plant material using recombinant PCR
    • Blattner FR (1999) Direct amplification of the entire ITS region from poorly preserved plant material using recombinant PCR. Biotechniques 29: 1180-1186.
    • (1999) Biotechniques , vol.29 , pp. 1180-1186
    • Blattner, F.R.1
  • 6
    • 1942511467 scopus 로고    scopus 로고
    • Phylogeny of Hordeum (Poaceae) as inferred by nuclear rDNA ITS sequences
    • Blattner FR (2004) Phylogeny of Hordeum (Poaceae) as inferred by nuclear rDNA ITS sequences. Mol Phylogenet Evol 33: 289-299.
    • (2004) Mol Phylogenet Evol , vol.33 , pp. 289-299
    • Blattner, F.R.1
  • 7
    • 0031671801 scopus 로고    scopus 로고
    • The use of semi-automated fluorescent microsatellite analysis for tomato cultivar identification
    • Bredemeijer GMM, Arens P, Wouters D, Visser D, Vosman B (1998) The use of semi-automated fluorescent microsatellite analysis for tomato cultivar identification. Theor Appl Genet 97: 584-590.
    • (1998) Theor Appl Genet , vol.97 , pp. 584-590
    • Bredemeijer, G.M.M.1    Arens, P.2    Wouters, D.3    Visser, D.4    Vosman, B.5
  • 9
    • 0033771358 scopus 로고    scopus 로고
    • TCS: a computer program to estimate gene genealogies
    • Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Mol Ecol 9: 1657-1660.
    • (2000) Mol Ecol , vol.9 , pp. 1657-1660
    • Clement, M.1    Posada, D.2    Crandall, K.A.3
  • 10
    • 33645540715 scopus 로고    scopus 로고
    • Aegilops tauschii: genetic variation in Iran
    • Dudnikov AJ, Kawahara T (2006) Aegilops tauschii: genetic variation in Iran. Genet Res Crop Evol 53: 579-586.
    • (2006) Genet Res Crop Evol , vol.53 , pp. 579-586
    • Dudnikov, A.J.1    Kawahara, T.2
  • 11
    • 0031671693 scopus 로고    scopus 로고
    • The structure of the Aegilops tauschii genepool and the evolution of hexaploid wheat
    • Dvorak J, Luo MC, Yang ZL, Zhang HB (1998) The structure of the Aegilops tauschii genepool and the evolution of hexaploid wheat. Theor Appl Genet 97: 657-670.
    • (1998) Theor Appl Genet , vol.97 , pp. 657-670
    • Dvorak, J.1    Luo, M.C.2    Yang, Z.L.3    Zhang, H.B.4
  • 12
    • 0002371684 scopus 로고
    • The wild gene resources of wheat
    • Feldman M, Sears ER (1981) The wild gene resources of wheat. Sci Am 244: 102-112.
    • (1981) Sci Am , vol.244 , pp. 102-112
    • Feldman, M.1    Sears, E.R.2
  • 14
    • 51649148961 scopus 로고
    • A modified CTAB extraction procedure for Musa and Ipomoea
    • Gawel NJ, Jarret RL (1991) A modified CTAB extraction procedure for Musa and Ipomoea. Plant Mol Biol Rep 9: 262-266.
    • (1991) Plant Mol Biol Rep , vol.9 , pp. 262-266
    • Gawel, N.J.1    Jarret, R.L.2
  • 15
    • 9444278424 scopus 로고    scopus 로고
    • Phylogenetic relationships and intraspecific variation of D-genome Aegilops L. as revealed by RAPD analysis
    • Goryunova SV, Kochieva EZ, Chikida NN, Pukhalskyi VA (2004) Phylogenetic relationships and intraspecific variation of D-genome Aegilops L. as revealed by RAPD analysis. Russ J Genet 40: 515-523.
    • (2004) Russ J Genet , vol.40 , pp. 515-523
    • Goryunova, S.V.1    Kochieva, E.Z.2    Chikida, N.N.3    Pukhalskyi, V.A.4
  • 16
    • 0002293815 scopus 로고
    • Vorarbeiten zur monographischen Darstellung von Wildpflanzensortimenten: Aegilops L
    • Hammer K (1980) Vorarbeiten zur monographischen Darstellung von Wildpflanzensortimenten: Aegilops L. Kulturpflanze 28: 33-180.
    • (1980) Kulturpflanze , vol.28 , pp. 33-180
    • Hammer, K.1
  • 17
    • 0029278663 scopus 로고
    • Phylogenetic relationships of the monogenomic species of the wheat tribe, Triticeae (Poaceae), inferred from nuclear rDNA (internal transcribed spacer) sequences
    • Hsiao C, Chatterton NJ, Asay KH, Jensen KB (1995) Phylogenetic relationships of the monogenomic species of the wheat tribe, Triticeae (Poaceae), inferred from nuclear rDNA (internal transcribed spacer) sequences. Genome 38: 211-223.
    • (1995) Genome , vol.38 , pp. 211-223
    • Hsiao, C.1    Chatterton, N.J.2    Asay, K.H.3    Jensen, K.B.4
  • 18
    • 78650928545 scopus 로고
    • Electrophoretic study of acid phosphatase isoenzymes in the grass genus Aegilops
    • Jaaska V (1978) Electrophoretic study of acid phosphatase isoenzymes in the grass genus Aegilops. Biochem Physiol Pflanz 172: 135-153.
    • (1978) Biochem Physiol Pflanz , vol.172 , pp. 135-153
    • Jaaska, V.1
  • 19
    • 0000086514 scopus 로고
    • Aspartate aminotransferase and alcohol dehydrogenase isoenzyme: intraspecific differentiation in Aegilops tauschii and the origin of the D genome polyploids in the wheat group
    • Jaaska V (1981) Aspartate aminotransferase and alcohol dehydrogenase isoenzyme: intraspecific differentiation in Aegilops tauschii and the origin of the D genome polyploids in the wheat group. Plant Syst Evol 137: 259-273.
    • (1981) Plant Syst Evol , vol.137 , pp. 259-273
    • Jaaska, V.1
  • 20
    • 33748073420 scopus 로고    scopus 로고
    • A chloroplast genealogy of Hordeum (Poaceae): long-term persisting haplotypes, incomplete lineage sorting, regional extinction, and the consequences for phylogenetic inference
    • Jakob SS, Blattner FR (2006) A chloroplast genealogy of Hordeum (Poaceae): long-term persisting haplotypes, incomplete lineage sorting, regional extinction, and the consequences for phylogenetic inference. Mol Biol Evol 23: 1602-1612.
    • (2006) Mol Biol Evol , vol.23 , pp. 1602-1612
    • Jakob, S.S.1    Blattner, F.R.2
  • 21
    • 77949790447 scopus 로고    scopus 로고
    • Two extinct diploid progenitors where involved in allopolyploid formation in the Hordeum murinum (Poaceae: Triticeae) taxon complex
    • Jakob SS, Blattner FR (2010) Two extinct diploid progenitors where involved in allopolyploid formation in the Hordeum murinum (Poaceae: Triticeae) taxon complex. Mol Phylogenet Evol 55: 650-659.
    • (2010) Mol Phylogenet Evol , vol.55 , pp. 650-659
    • Jakob, S.S.1    Blattner, F.R.2
  • 22
    • 62349092321 scopus 로고    scopus 로고
    • Phylogeographic analyses and paleodistribution modeling indicates Pleistocene in situ survival of Hordeum species (Poaceae) in southern Patagonia without genetic or spatial restriction
    • Jakob SS, Martinez-Meyer E, Blattner FR (2009) Phylogeographic analyses and paleodistribution modeling indicates Pleistocene in situ survival of Hordeum species (Poaceae) in southern Patagonia without genetic or spatial restriction. Mol Biol Evol 26: 907-923.
    • (2009) Mol Biol Evol , vol.26 , pp. 907-923
    • Jakob, S.S.1    Martinez-Meyer, E.2    Blattner, F.R.3
  • 23
    • 77949841155 scopus 로고    scopus 로고
    • Population demography influences climatic niche evolution: Evidence from diploid South American Hordeum species (Poaceae)
    • Jakob SS, Heibl C, Rödder D, Blattner FR (2010) Population demography influences climatic niche evolution: evidence from diploid South American Hordeum species (Poaceae). Mol Ecol 19: 1423-1438.
    • (2010) Mol Ecol , vol.19 , pp. 1423-1438
    • Jakob, S.S.1    Heibl, C.2    Röder, D.3    Blattner, F.R.4
  • 25
    • 85007903351 scopus 로고
    • Considerations on the evolution and distribution of Aegilops species based on the analyzer-method
    • Kihara H (1954) Considerations on the evolution and distribution of Aegilops species based on the analyzer-method. Cytologia 19: 336-357.
    • (1954) Cytologia , vol.19 , pp. 336-357
    • Kihara, H.1
  • 26
    • 0008792688 scopus 로고
    • Completion of genome-analysis of three 6x species of Aegilops
    • Kihara H (1957) Completion of genome-analysis of three 6x species of Aegilops. Wheat Inf Serv 6: 11.
    • (1957) Wheat Inf Serv , vol.6 , pp. 11
    • Kihara, H.1
  • 28
    • 0001633535 scopus 로고
    • The D genome of the Triticeae
    • Kimber G, Zhao YH (1983) The D genome of the Triticeae. Can J Genet Cytol 25: 581-589.
    • (1983) Can J Genet Cytol , vol.25 , pp. 581-589
    • Kimber, G.1    Zhao, Y.H.2
  • 29
    • 25444435507 scopus 로고    scopus 로고
    • Morphological characterisation and evaluation of the subdivision of Aegilops tauschii Coss
    • Knaggs P, Ambrose MJ, Reader SM, Miller TE (2000) Morphological characterisation and evaluation of the subdivision of Aegilops tauschii Coss. Wheat Inf Serv 91: 15-19.
    • (2000) Wheat Inf Serv , vol.91 , pp. 15-19
    • Knaggs, P.1    Ambrose, M.J.2    Reader, S.M.3    Miller, T.E.4
  • 30
    • 0033844385 scopus 로고    scopus 로고
    • Analysis of relationships between Aegilops tauschii and the D genome of wheat utilizing microsatellites
    • Lelley T, Stachel M, Grausgruber H, Vollmann J (2000) Analysis of relationships between Aegilops tauschii and the D genome of wheat utilizing microsatellites. Genome 43: 661-668.
    • (2000) Genome , vol.43 , pp. 661-668
    • Lelley, T.1    Stachel, M.2    Grausgruber, H.3    Vollmann, J.4
  • 31
    • 37249021402 scopus 로고    scopus 로고
    • Phylogenetic relationships in Leymus (Poaceae: Triticeae) revealed by the nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences
    • Liu Z, Chen Z, Pan J, Li X, Su M, Wang L, Li H, Liu G (2008) Phylogenetic relationships in Leymus (Poaceae: Triticeae) revealed by the nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences. Mol Phylogenet Evol 46: 278-289.
    • (2008) Mol Phylogenet Evol , vol.46 , pp. 278-289
    • Liu, Z.1    Chen, Z.2    Pan, J.3    Li, X.4    Su, M.5    Wang, L.6    Li, H.7    Liu, G.8
  • 32
    • 22844434137 scopus 로고    scopus 로고
    • Genealogical use of chloroplast DNA variation for intraspecific studies of Aegilopstauschii Coss
    • Matsuoka Y, Mori N, Kawahara T (2005) Genealogical use of chloroplast DNA variation for intraspecific studies of Aegilopstauschii Coss. Theor Appl Genet 111: 265-271.
    • (2005) Theor Appl Genet , vol.111 , pp. 265-271
    • Matsuoka, Y.1    Mori, N.2    Kawahara, T.3
  • 33
    • 69249209825 scopus 로고    scopus 로고
    • Multiple origins promote the ecological amplitude of allopolyploid Aegilops (Poaceae)
    • Meimberg H, Rice KJ, Milan NF, Njoku CC, McKay JK (2009) Multiple origins promote the ecological amplitude of allopolyploid Aegilops (Poaceae). Am J Bot 96: 1262-1273.
    • (2009) Am J Bot , vol.96 , pp. 1262-1273
    • Meimberg, H.1    Rice, K.J.2    Milan, N.F.3    Njoku, C.C.4    McKay, J.K.5
  • 34
    • 39749122645 scopus 로고    scopus 로고
    • Evaluation of genetic diversity in the subspecies of Aegilops tauschii using microsatellite markers
    • Naghavi MR, Mardi M, Pirseyedi SM, Tabatabaei SF (2008) Evaluation of genetic diversity in the subspecies of Aegilops tauschii using microsatellite markers. Cereal Res Comm 36: 21-31.
    • (2008) Cereal Res Comm , vol.36 , pp. 21-31
    • Naghavi, M.R.1    Mardi, M.2    Pirseyedi, S.M.3    Tabatabaei, S.F.4
  • 36
    • 0006919926 scopus 로고
    • Analysis of gene diversity in subdivided populations
    • Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70: 3321-3323.
    • (1973) Proc Natl Acad Sci USA , vol.70 , pp. 3321-3323
    • Nei, M.1
  • 37
    • 0001801997 scopus 로고    scopus 로고
    • From staple crop to extinction? The archaeology and history of the hulled wheats
    • S. Padulosi, K. Hammer, and J. Heller (Eds.), Rome: IPGRI
    • Nesbitt M, Samuel D (1996) From staple crop to extinction? The archaeology and history of the hulled wheats. In: Padulosi S, Hammer K, Heller J (eds) Proceedings of the First International Workshop on Hulled Wheats. IPGRI, Rome, pp 41-100.
    • (1996) Proceedings of the First International Workshop on Hulled Wheats , pp. 41-100
    • Nesbitt, M.1    Samuel, D.2
  • 39
    • 0033848534 scopus 로고    scopus 로고
    • Isolation and mapping of microsatellite markers specific for the D genome of bread wheat
    • Pestsova E, Ganal MW, Röder MS (2000a) Isolation and mapping of microsatellite markers specific for the D genome of bread wheat. Genome 43: 689-697.
    • (2000) Genome , vol.43 , pp. 689-697
    • Pestsova, E.1    Ganal, M.W.2    Röder, M.S.3
  • 41
    • 33645007207 scopus 로고    scopus 로고
    • Phylogenetic relationships of Triticum and Aegilops and evidence for the origin of the A, B, and D genomes of common wheat (Triticum aestivum)
    • Petersen G, Seberg O, Yde M, Berthelsen K (2006) Phylogenetic relationships of Triticum and Aegilops and evidence for the origin of the A, B, and D genomes of common wheat (Triticum aestivum). Mol Phylogenet Evol 39: 70-82.
    • (2006) Mol Phylogenet Evol , vol.39 , pp. 70-82
    • Petersen, G.1    Seberg, O.2    Yde, M.3    Berthelsen, K.4
  • 42
    • 70350399652 scopus 로고    scopus 로고
    • Application of non-coding DNA regions in intraspecific analyses
    • Pleines T, Jakob SS, Blattner FR (2009) Application of non-coding DNA regions in intraspecific analyses. Plant Syst Evol 282: 281-294.
    • (2009) Plant Syst Evol , vol.282 , pp. 281-294
    • Pleines, T.1    Jakob, S.S.2    Blattner, F.R.3
  • 43
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 44
    • 7844227430 scopus 로고    scopus 로고
    • The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis
    • Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S, Rafalski A (1996) The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol Breed 2: 225-238.
    • (1996) Mol Breed , vol.2 , pp. 225-238
    • Powell, W.1    Morgante, M.2    Andre, C.3    Hanafey, M.4    Vogel, J.5    Tingey, S.6    Rafalski, A.7
  • 46
    • 0001088529 scopus 로고
    • Molecular analysis of the D-genome of the Triticeae
    • Rayburn AL, Gill BS (1987) Molecular analysis of the D-genome of the Triticeae. Theor Appl Genet 73: 385-388.
    • (1987) Theor Appl Genet , vol.73 , pp. 385-388
    • Rayburn, A.L.1    Gill, B.S.2
  • 49
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 50
    • 33750604293 scopus 로고    scopus 로고
    • Biodiversity of diploid D-genome Aegilops tauschii Coss. in Iran measured using microsatellites
    • Saeidi H, Rahiminejad MR, Vallian S, Heslop-Harrison JS (2006) Biodiversity of diploid D-genome Aegilops tauschii Coss. in Iran measured using microsatellites. Genet Res Crop Evol 53: 1477-1484.
    • (2006) Genet Res Crop Evol , vol.53 , pp. 1477-1484
    • Saeidi, H.1    Rahiminejad, M.R.2    Vallian, S.3    Heslop-Harrison, J.S.4
  • 51
    • 48849101870 scopus 로고    scopus 로고
    • Retroelement insertional polymorphisms, diversity and phylogeography within diploid D-genome Aegilops tauschii (Triticeae, Poaceae) sub-taxa in Iran
    • Saeidi H, Rahiminejad MR, Heslop-Harrison JS (2008a) Retroelement insertional polymorphisms, diversity and phylogeography within diploid D-genome Aegilops tauschii (Triticeae, Poaceae) sub-taxa in Iran. Ann Bot 101: 855-861.
    • (2008) Ann Bot , vol.101 , pp. 855-861
    • Saeidi, H.1    Rahiminejad, M.R.2    Heslop-Harrison, J.S.3
  • 52
    • 57649149153 scopus 로고    scopus 로고
    • Genetic diversity and gene-pool subdivisions of diploid D-genome Aegilops tauschii Coss. (Poaceae) in Iran as revealed by AFLP
    • Saeidi H, Sayed Tabatabaei BE, Rahimmalek M, Talebi-Badaf M, Rahiminejad MR (2008b) Genetic diversity and gene-pool subdivisions of diploid D-genome Aegilops tauschii Coss. (Poaceae) in Iran as revealed by AFLP. Genet Res Crop Evol 55: 1231-1238.
    • (2008) Genet Res Crop Evol , vol.55 , pp. 1231-1238
    • Saeidi, H.1    Sayed Tabatabaei, B.E.2    Rahimmalek, M.3    Talebi-Badaf, M.4    Rahiminejad, M.R.5
  • 53
    • 0346091308 scopus 로고    scopus 로고
    • Use of nuclear genes for phylogeny reconstruction in plants
    • Small RL, Cronn RC, Wendel JF (2004) Use of nuclear genes for phylogeny reconstruction in plants. Austral Syst Bot 17: 145-170.
    • (2004) Austral Syst Bot , vol.17 , pp. 145-170
    • Small, R.L.1    Cronn, R.C.2    Wendel, J.F.3
  • 55
    • 72549119903 scopus 로고    scopus 로고
    • Natural variation of morphological traits in wild wheat progenitor Aegilops tauschii Coss
    • Takumi S, Nishioka E, Kawahara T, Matsuoka Y (2009) Natural variation of morphological traits in wild wheat progenitor Aegilops tauschii Coss. Breed Sci 59: 579-588.
    • (2009) Breed Sci , vol.59 , pp. 579-588
    • Takumi, S.1    Nishioka, E.2    Kawahara, T.3    Matsuoka, Y.4
  • 56
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acids Res 25: 4876-4882.
    • (1997) Nucl Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 58
    • 0034510557 scopus 로고    scopus 로고
    • Evolution of parental ITS regions of nuclear rDNA in allopolyploid Aegilops (Poaceae) species
    • Wang JB, Wang C, Shi SH, Zhong Y (2000) Evolution of parental ITS regions of nuclear rDNA in allopolyploid Aegilops (Poaceae) species. Hereditas 133: 1-7.
    • (2000) Hereditas , vol.133 , pp. 1-7
    • Wang, J.B.1    Wang, C.2    Shi, S.H.3    Zhong, Y.4
  • 59
    • 27544459852 scopus 로고    scopus 로고
    • Intra- and interspecific phylogenetic relationships among diploid Triticum-Aegilops species (Poaceae) based on basepair substitutions, indels, and microsatellites in chloroplast noncoding sequences
    • Yamane K, Kawahara T (2005) Intra- and interspecific phylogenetic relationships among diploid Triticum-Aegilops species (Poaceae) based on basepair substitutions, indels, and microsatellites in chloroplast noncoding sequences. Am J Bot 92: 1887-1898.
    • (2005) Am J Bot , vol.92 , pp. 1887-1898
    • Yamane, K.1    Kawahara, T.2


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