Chloroplast and nuclear microsatellite analysis of Aegilops cylindrica

Theoretical and Applied Genetics

Volumn 111, Issue 3, 2005, Pages 561-572

  Gandhi, Harish T ^a   Vales, M Isabel ^a   Watson, Christy J W ^a   Mallory Smith, Carol A ^a   Mori, Naoki ^b   Rehman, Maqsood ^c   Zemetra, Robert S ^c   Riera Lizarazu, Oscar ^a  

^a OREGON STATE UNIVERSITY   (United States)

^b KOBE UNIVERSITY   (Japan)

^c UNIVERSITY OF IDAHO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIODIVERSITY; BIOMARKERS; CYTOLOGY; GENES; SATELLITES;

GENE POOLS; GENOMES; MICROSATELLITES ANALYSIS; PLASTOMES;

CROPS;

MICROSATELLITE DNA; PLANT DNA;

ALLELE; ARTICLE; CELL NUCLEUS; CHLOROPLAST; CLASSIFICATION; GENETIC VARIABILITY; GENETICS; GENOME; PHYLOGENY; PLANT CHROMOSOME; POACEAE;

ALLELES; CELL NUCLEUS; CHLOROPLASTS; CHROMOSOMES, PLANT; DNA, PLANT; GENOME, PLANT; MICROSATELLITE REPEATS; PHYLOGENY; POACEAE; VARIATION (GENETICS);

BIODIVERSITY; FARM CROPS; GENES; PROTOPLASM; SATELLITES;

AEGILOPS CYLINDRICA;

EID: 23944441981     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-005-2047-z     Document Type: Article

References (60)

1. Badaeva ED, Amosova AV, Muravenko OV, Samatadze TE, Chikida NN, Zelenin AV, Friebe B, Gill BS (2002) Genome differentiation in Aegilops. 3. Evolution of the D-genome cluster. Plant Syst Evol 231:163-190
2. Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32:314-331
3. Bowcock AM, Ruiz-Linares A, Tomfohrde J, Minch E, Kidd JR, Cavalli-Sforza LL (1994) High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368:455-457
4. Brubaker CL, Koontz JA, Wendel JF (1993) Bidirectional cytoplasmic and nuclear introgression in the new world cottons, Gossypium barbadense and G. hirsutum (Malvaceae). Am J Bot 80:1203-1208
5. Caldwell K, Dvorak J, Lagudah E, Akhunov E, Luo M-C, Wolters P, Powell W (2004) Sequence polymorphism in polyploid wheat and their D-genome diploid ancestor. Genetics 167:941-947
6. Chennaveeraiah MS (1960) Karyomorphologic and cytotaxonomic studies in Aegilops. Acta Hortic Gotob 23:85-178
7. Dewey S (1996) Jointed goatgrass - an overview of the problem. In: Jenks B (ed) Proceedings of the Pacific Northwest Jointed Goatgrass Conference. Pocatello, Idaho, pp 1-2
8. Doyle JJ, Morgante M, Tingey SV, Powell W (1998) Size homoplasy in chloroplast microsatellites of wild perennial relatives of soybean (Glycine subgenus glycine). Mol Biol Evol 15:215-218
9. Dubcovsky J, Dvorak J (1994) Genome origins of Triticum cylindricum, Triticum triunciale and Triticum ventricosum (Poaceae) inferred from variation in restriction patterns of repeated nucleotide sequences: a methodological study. Am J Bot 81:1327-1335
10. Dvorak J, Luo M-C, Yang Z-L, Zhang H-B (1998) The structure of the Aegilops tauschii genepool and the evolution of hexaploid wheat. Theor Appl Genet 97:657-670
11. Eig A (1929) Monographisch-kritische Übersicht der Gattung Aegilops. Repert Spec Nov Regni Veg 55:1-228
12. El Bouhssini M, Benlhabib O, Nachit MM, Houari A, Bentika A, Nsarellah N, Lhaloui S (1998) Identification in Aegilops species of resistant sources to Hessian fly (Diptera: Cecidomyiidae) in Morocco. Genet Res Crop Evol 45:343-345
13. Farooq S, Iqbal N, Asghar M, Shah TM (1992) Intergeneric hybridization for wheat improvement VI. Production of salt tolerant germplasm through crossing wheat (Triticum aestivum) with Aegilops cylindrica and its significance in practical agriculture. J Genet Plant Breed 46:125-132
14. Goryunova SV, Kochieva EZ, Chikida NN, Pukhalskyi VA (2004) Phylogenetic relationships and intraspecific variation of D-genome Aegilops L. as reveled by RAPD analysis. Russ J Genet 40:515-523
15. Guadagnuolo R, Savova-Bianchi D, Felber F (2001) Gene flow from wheat (Triticum aestivum L.) to jointed goatgrass (Aegilops cylindrica Host.), as revealed by RAPD and microsatellite markers. Theor Appl Genet 103:1-8
16. Hale ML, Borland AM, Gustafsson MHG, Wolf K (2004) Causes of size homoplasy among chloroplast microsatellite in closely related Clusia species. J Mol Evol 58:182-190
17. Hammer K (1980) Vorarbeiten zur monographischen Darstellung von Wildpflanzensortimenten: Aegilops L. Kulturpflanze 28:33-180
18. Iriki N, Kawakami A, Takata K, Kuwabara T, Ban T (2001) Screening relatives of wheat for snow mold resistance and freezing tolerance. Euphytica 122:335-341
19. Ishii T, Mori N, Oghihara Y (2001) Evaluation of allelic diversity at microsatellite loci among common wheat and its ancestral species. Theor Appl Genet 103:896-904
20. Jaaska V (1981) Aspartate aminotransferase and alcohol dehydrogenase isoenzymes: intraspecific differentiation in Aegilops tauschii and the origin of the D genome polyploids in the wheat group. Plant Syst Evol 137:259-273
21. Kihara H, Matsumura S (1941) Genomanalyse bei Triticum und Aegilops. VIII. Rückkreuzung des Bastards A. caudata x A. cylindrica zu den Eltern und seine Nachkommen. Cytologia 11:493-506
22. Kimber G, Feldman M (1987) Wild wheat: an introduction. University of Missouri-Columbia, pp 36-69
23. Kimber G, Zhao YH (1983) The D genome of the Triticeae. Am J Genet Cytol 25:581-589
24. Knobloch IW (1968) A check list of crosses in the Gramineae. Department of Botany and Plant Pathology, Michigan State University, East Lansing, pp 3-9
25. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Release 2, Tempe, Arizona
26. Lubbers EL, Gill KS, Cox TS, Gill BS (1991) Variation of molecular markers among geographically diverse accessions of Triticum tauschii. Genome 34:354-361
27. Maan SS (1976) Cytoplasmic homology between Aegilops squarrosa L. and A. cylindrica Host. Crop Sci 16:757-761
28. Masci S, D'ovidio R, Lafiandra D, Tanzarella OA, Porceddu E (1992) Electrophoretic and molecular analysis of alpha-gliadins in Aegilops species (Poaceae) belonging to the D genome cluster and in their putative progenitors. Plant Syst Evol 179:115-128
29. Minch E, Ruiz-Linares A, Goldstein D, Feldman M, Cavalli-Sforza LL (1997) MICROSAT (version 2.0): a computer program for calculating various statistics on microsatellite allele data release 2.0. http://hpgl.stanford.edu/projects/ microsat/
30. Morrison LA, Riera-Lizarazu O, Crémieux L, Mallory-Smith CA (2002) Jointed goatgrass (Aegilops cylindrica Host) x wheat (Triticum aestivum L.) hybrids: hybridization dynamics in Oregon wheat fields. Crop Sci 42:1863-1872
31. Murai K, Tsunewaki K (1986) Molecular basis of genetic diversity among cytoplasms of Triticum and Aegilops species. IV. CtDNA variation in Ae. triuncialis. Heredity 57:335-339
32. Nakai Y (1981) D genome donors for Aegilops cylindrica (CCDD) and Triticum aestivum (AABBDD) deduced from esterase isozyme analysis. Theor Appl Genet 60:11-16
33. Ogg AG, Seefeldt SS (1999) Characterizing traits that enhance the competitiveness of winter wheat (Triticum aestivum) against jointed goatgrass (Aegilops cylindrica). Weed Sci 47:74-80
34. Ogihara Y, Tsunewaki K (1988) Diversity and evolution of chloroplast DNA in Triticum and Aegilops as revealed by restriction fragment analysis. Theor Appl Genet 76:321-322
35. Ohta S (2000) Genetic differentiation and post-glacial establishment of the geographical distribution in Aegilops caudata L. Genes Genet Syst 75:189-196
36. Ohta S (2001) Variation and geographical distribution of the genotypes controlling the diagnostic spike morphology of two varieties of Aegilops caudata L. Genes Genet Syst 76:305-310
37. Okuno K, Ebana K, Noov B, Yoshida H (1998) Genetic diversity of central Asian and north Caucasian Aegilops species as revealed by RAPD markers. Genet Res Crop Evol 45:389-394
38. Page RDM (2001) Treeview: an application to display phylogenetic trees on personal computers. Comp Appl Biosci 12:357-358
39. Pester TA, Ward SM, Fenwick AL, Westra P, Nissen SJ (2003) Genetic diversity of jointed goatgrass (Aegilops cylindrica) determined with RAPD and AFLP markers. Weed Sci 51:287-293
40. Pestova E, Korzun V, Goncharov NP, Hammer K, Ganal MW, Röder MS (2000) Microsatellite analysis of Aegilops tauschii germplasm. Theor Appl Genet 101:100-106
41. Provan J, Soranzo N, Wilson NJ, Goldstein DB, Powell W (1999) A low mutation rate for chloroplast microsatellites. Genetics 153:943-947
42. Provan J, Wolters P, Caldwell KH, Powell W (2004) High-resolution organeller genome analysis of Triticum and Aegilops sheds new light on cytoplasm evolution in wheat. Theor Appl Genet 108:1182-1190
43. van Raamsdonck LWJ, Smiech MP, Sandbrink JM (1997) Introgression explains incongruence between nuclear and chloroplast DNA-based phylogenies in Allium section Cepa. Bot J Linn Soc 123:91-108
44. Riera-Lizarazu O, Rines HW, Phillips RL (1996) Cytological and molecular characterization of oat x maize partial hybrids. Theor Appl Genet 93:123-135
45. Riera-Lizarazu O, Vales MI, Ananiev EV, Rines HW, Phillips RL (2000) Production and characterization of maize chromosome 9 radiation hybrids derived from an oat-maize addition line. Genetics 156:327-339
46. Rieseberg LH, Soltis DE (1991) Phylogenetic consequences of cytoplasmic gene flow in plants. Evol Trends Plants 5:65-84
47. Riley R, Law CN (1965) Genetic variation in chromosome pairing. Adv Genet 13:57-114
48. Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier M-H, Leroy P, Ganal MW (1998) A microsatellite map of wheat. Genetics 149:2007-2023
49. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
50. Sears ER (1941) Amphidiploids in the seven-chromosome Triticinae. Mo Agr Exp Sta Res Bull 337:1-20
51. van Slageren MW (1994) Wild wheats: a monograph of Aegilops L. and Amblyopyrum (Jaub. and Spach) Eig (Poaceae), vol 94 (7). ICARDA, Syria and Wageningen Agricultural University, The Netherlands
52. Tsunewaki K (1996) Plasmon analysis as the counterpart of genome analysis. In: Jauhar PP (ed) Methods of genome analysis in plants. CRC, Boca Raton, pp 271-300
53. Vanichanon A, Blake NK, Sherman JD (2003) Multiple origins of allopolyploid Aegilops triuncialis. Theor Appl Genet 106:804-810
54. Wang G, Miyashita NT, Tsunewaki K (1997) Plasmon analyses of Triticum (wheat) and Aegilops: PCR-single-stand conformational polymorphism (PCR-SSCP) analyses of organeller DNAs. Proc Natl Acad Sci USA 94:14570-14577
55. Wang G-Z, Matsuoka Y, Tsunewaki K (2000a) Evolutionary features of chondriome divergence in Triticum (wheat) and Aegilops shown by RFLP analysis of mitochondrial DNAs. Theor Appl Genet 100:221-231
56. Wang JB, Wang C, Shi S-H, Zhong Y (2000b) Evolution of parental ITS regions of nuclear rDNA in allopolyploid Aegilops (Poaceae) species. Hereditas 133:1-7
57. 1 plants by using genomic in situ hybridization (GISH) technique. Crop Sci 42:939-943
58. Watanabe N, Mastui K, Furuta Y (1994) Uniformity of the alpha-amylase isozymes of Aegilops cylindrica introduced into North America: comparisons with ancestral Eurasian accessions. In: Wang K, Jensen B, Jaussi C (eds) Proceedings of the 2nd international wheat symposium. Utah State University, Logan
59. Wolfe KH, Li W-H, Sharp PM (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci USA 84:9054-9058
60. Zemetra RS, Hansen J, Mallory-Smith CA (1998) Potential for gene transfer between wheat (Triticum aestivum) and jointed goatgrass (Aegilops cylindrica). Weed Sci 46:313-317