-
1
-
-
0014669443
-
Identification of an enzyme-γ-glutamyl coenzyme A intermediate from coenzyme A transferase
-
Solomon, F., and Jencks, W. P. (1969) Identification of an enzyme-γ-glutamyl coenzyme A intermediate from coenzyme A transferase. J. Biol. Chem. 244, 1079-1081.
-
(1969)
J. Biol. Chem.
, vol.244
, pp. 1079-1081
-
-
Solomon, F.1
Jencks, W.P.2
-
2
-
-
0028307726
-
Identification of glutamate344 as the catalytic residue in the active site of pig heart CoAtransferase
-
Rochet, J. C., and Bridger, W. A. (1994) Identification of glutamate344 as the catalytic residue in the active site of pig heart CoAtransferase. Protein Sci. 3, 975-981.
-
(1994)
Protein Sci.
, vol.3
, pp. 975-981
-
-
Rochet, J.C.1
Bridger, W.A.2
-
3
-
-
34648861883
-
Studies concerning themechanism of action of acetoacetyl succinic thiophorase by use of O
-
Falcone, A. B., and Boyer, P. D. (1959) Studies concerning themechanism of action of acetoacetyl succinic thiophorase by use of O, Arch. BioChem. Biophys. 83, 337-344.
-
(1959)
Arch. BioChem. Biophys.
, vol.83
, pp. 337-344
-
-
Falcone, A.B.1
Boyer, P.D.2
-
4
-
-
0014670009
-
The participation of anenzyme-bound oxygen group in a coenzyme A transferase reaction
-
Benson, R. W., and Boyer, P. D. (1969) The participation of anenzyme-bound oxygen group in a coenzyme A transferase reaction. J. Biol. Chem. 244, 2366-2371.
-
(1969)
J. Biol. Chem.
, vol.244
, pp. 2366-2371
-
-
Benson, R.W.1
Boyer, P.D.2
-
5
-
-
44449097276
-
Reinvestigation of the catalytic mechanism of formyl-CoAtransferase, a class III CoA-transferase
-
Berthold, C. L., Toyota, C. G., Richards, N. G., and Lindqvist, Y.(2008) Reinvestigation of the catalytic mechanism of formyl-CoAtransferase, a class III CoA-transferase. J. Biol. Chem. 283, 6519-6529.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 6519-6529
-
-
Berthold, C.L.1
Toyota, C.G.2
Richards, N.G.3
Lindqvist, Y.4
-
6
-
-
0029083357
-
Role of bindingenergy with coenzyme A in catalysis by 3-oxoacid coenzyme Atransferase
-
Whitty, A., Fierke, C. A., and Jencks, W. P. (1995) Role of bindingenergy with coenzyme A in catalysis by 3-oxoacid coenzyme Atransferase. Biochemistry 34, 11678-11689.
-
(1995)
Biochemistry
, vol.34
, pp. 11678-11689
-
-
Whitty, A.1
Fierke, C.A.2
Jencks, W.P.3
-
7
-
-
0020491196
-
Formation of active site thiolesters of CoA transferase and the dependence of catalysis on specificbinding interactions
-
Moore, S. A., and Jencks, W. P. (1982) Formation of active site thiolesters of CoA transferase and the dependence of catalysis on specificbinding interactions. J. Biol. Chem. 257, 10893-10907.
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 10893-10907
-
-
Moore, S.A.1
Jencks, W.P.2
-
8
-
-
0023002427
-
Two functional domains ofcoenzyme A activate catalysis by coenzyme A transferase
-
Fierke, C. A., and Jencks, W. P. (1986) Two functional domains ofcoenzyme A activate catalysis by coenzyme A transferase. J. Biol. Chem. 261, 7603-7606.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 7603-7606
-
-
Fierke, C.A.1
Jencks, W.P.2
-
9
-
-
0017295718
-
Utilization of theinactivation rate of coenzyme A trasferase by thiol reagents todetermine properties of the enzyme-CoA intermediate
-
White, H., Solomon, F., and Jencks, W. P. (1976) Utilization of theinactivation rate of coenzyme A trasferase by thiol reagents todetermine properties of the enzyme-CoA intermediate. J. Biol. Chem. 251, 1700-1707.
-
(1976)
J. Biol. Chem.
, vol.251
, pp. 1700-1707
-
-
White, H.1
Solomon, F.2
Jencks, W.P.3
-
10
-
-
0019616523
-
Modification and inactivationof CoA transferase by 2-nitro-5- (thiocyanato) benzoate
-
Kindman, L. A., and Jencks, W. P. (1981) Modification and inactivationof CoA transferase by 2-nitro-5-(thiocyanato) benzoate. Biochemistry 20, 5183-5187.
-
(1981)
Biochemistry
, vol.20
, pp. 5183-5187
-
-
Kindman, L.A.1
Jencks, W.P.2
-
11
-
-
30044436826
-
Crystallographictrapping of the glutamyl-CoA thioester intermediate of family i CoAtransferases
-
Rangarajan, E. S., Li, Y., Ajamian, E., Iannussi, P., Kernaghan, S. D., Fraser, M. E., Cygler, M., and Matte, A. (2005) Crystallographictrapping of the glutamyl-CoA thioester intermediate of family I CoAtransferases. J. Biol. Chem. 280, 42919-42928.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 42919-42928
-
-
Rangarajan, E.S.1
Li, Y.2
Ajamian, E.3
Iannussi, P.4
Kernaghan, S.D.5
Fraser, M.E.6
Cygler, M.7
Matte, A.8
-
12
-
-
2242445271
-
Structure of the mammalian CoA transferase from pig heart
-
Bateman, K. S., Brownie, E. R., Wolodko, W. T., and Fraser, M. E.(2002) Structure of the mammalian CoA transferase from pig heart.Biochemistry 41, 14455-14462.
-
(2002)
Biochemistry
, vol.41
, pp. 14455-14462
-
-
Bateman, K.S.1
Brownie, E.R.2
Wolodko, W.T.3
Fraser, M.E.4
-
13
-
-
16644387198
-
Structure of the CoA transferase from pig heart to 1.7 A resolution
-
Coros, A. M., Swenson, L., Wolodko, W. T., and Fraser, M. E. (2004) Structure of the CoA transferase from pig heart to 1.7 A resolution.Acta Crystallogr. D 60, 1717-1725.
-
(2004)
Acta Crystallogr. D
, vol.60
, pp. 1717-1725
-
-
Coros, A.M.1
Swenson, L.2
Wolodko, W.T.3
Fraser, M.E.4
-
14
-
-
34648836742
-
Identificationof the cysteine residue exposed by the conformational change in pigheart succinyl-CoA:3-ketoacid coenzyme A transferase on bindingcoenzyme A
-
Tammam, S. D., Rochet, J. C., and Fraser, M. E. (2007) Identificationof the cysteine residue exposed by the conformational change in pigheart succinyl-CoA:3-ketoacid coenzyme A transferase on bindingcoenzyme A. Biochemistry 46, 10852-10863.
-
(2007)
Biochemistry
, vol.46
, pp. 10852-10863
-
-
Tammam, S.D.1
Rochet, J.C.2
Fraser, M.E.3
-
15
-
-
0022632387
-
Mechanism-based fragmentation of coenzyme A transferase. Comparisonof alpha 2-macroglobulin and coenzyme A transferase thiolester reactions
-
Howard, J. B., Zieske, L., Clarkson, J., and Rathe, L. (1986) Mechanism-based fragmentation of coenzyme A transferase. Comparisonof alpha 2-macroglobulin and coenzyme A transferase thiolester reactions. J. Biol. Chem. 261, 60-65.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 60-65
-
-
Howard, J.B.1
Zieske, L.2
Clarkson, J.3
Rathe, L.4
-
16
-
-
0017184389
-
A rapid and sensitive method for thequantitation of microgram quantities of protein utilizing the principleof protein-dye binding
-
Bradford, M. M. (1976) A rapid and sensitive method for thequantitation of microgram quantities of protein utilizing the principleof protein-dye binding. Anal. BioChem. 72, 248-254.
-
(1976)
Anal. BioChem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
17
-
-
4344584625
-
An improved protocol for rapid freezing of proteinsamples for long-term storage
-
Deng, J., Davies, D. R., Wisedchaisri, G., Wu, M., Hol, W. G., and Mehlin, C. (2004) An improved protocol for rapid freezing of proteinsamples for long-term storage. Acta Crystallogr., Sect. D: Biol. Crystallogr. 60, 203-204.
-
(2004)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.60
, pp. 203-204
-
-
Deng, J.1
Davies, D.R.2
Wisedchaisri, G.3
Wu, M.4
Hol, W.G.5
Mehlin, C.6
-
18
-
-
1242274650
-
Automated protein crystal structuredetermination using ELVES
-
Holton, J., and Alber, T. (2004) Automated protein crystal structuredetermination using ELVES. Proc. Natl. Acad. Sci. U.S.A. 101, 1537-1542.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 1537-1542
-
-
Holton, J.1
Alber, T.2
-
19
-
-
0028103275
-
The CCP4 suite:Programs for protein crystallography
-
Collaborative Computational Project N.
-
Collaborative Computational Project, N. (1994) The CCP4 suite:Programs for protein crystallography. Acta Crystallogr. D50, 760-763.
-
(1994)
Acta Crystallogr. D
, vol.50
, pp. 760-763
-
-
-
20
-
-
0033954256
-
The proteindata bank
-
Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N., and Bourne, P. E. (2000) The ProteinData Bank. Nucleic Acids Res. 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
21
-
-
33846426122
-
Solving structures of protein complexes bymolecular replacement with Phaser
-
McCoy, A. J. (2007) Solving structures of protein complexes bymolecular replacement with Phaser. Acta Crystallogr., Sect. D: Biol. Crystallogr. 63, 32-41.
-
(2007)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.63
, pp. 32-41
-
-
McCoy, A.J.1
-
22
-
-
84920325457
-
AMoRe: An automated package for molecularreplacement
-
Navaza, J. (1994) AMoRe: an automated package for molecularreplacement. Acta Crystallogr. A50, 157-163.
-
(1994)
Acta Crystallogr. A
, vol.50
, pp. 157-163
-
-
Navaza, J.1
-
23
-
-
3543012707
-
Crystallography and NMR system (CNS) : A new softwaresystem for macromolecular structure determination
-
Brunger, A. T., Adams, P. D., Clore, G. M., Delano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Jilges, N., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography and NMR system (CNS) : a new softwaresystem for macromolecular structure determination. Acta Crystallogr., Sect. D: Biol. Crystallogr. 54, 905-921.
-
(1998)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.-S.7
Kuszewski, J.8
Jilges, N.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
24
-
-
0030924992
-
Refinementof macromolecular structures by the maximum-likelihoodmethod
-
Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Refinementof macromolecular structures by the maximum-likelihoodmethod. Acta Crystallogr., Sect. D: Biol. Crystallogr. 53, 240-255.
-
(1997)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
25
-
-
77949535720
-
Features and development of coot
-
Emsley, P., Lohkamp, B., Scott, W. G., and Cowtan, K. (2010) Features and Development of Coot. Acta Crystallogr., Sect. D: Biol. Crystallogr. 66, 486-501.
-
(2010)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
26
-
-
34547592557
-
MolProbity: Allatomcontacts and structure validation for proteins and nucleic acids
-
Davis, I. W., Leaver-Fay, A., Chen, V. B., Block, J. N., Kapral, G. J., Wang, X., Murray, L. W., Arendall, W. B., III, Snoeyink, J., Richardson, J. S., and Richardson, D. C. (2007) MolProbity: allatomcontacts and structure validation for proteins and nucleic acids.Nucleic Acids Res. 35, W375-383.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
Block, J.N.4
Kapral, G.J.5
Wang, X.6
Murray, L.W.7
Arendall, W.B.8
Iii Snoeyink, J.9
Richardson, J.S.10
Richardson, D.C.11
-
27
-
-
33744459472
-
Toward the structural genomics of complexes:crystal structure of a PE/PPE protein complex from Mycobacteriumtuberculosis
-
Strong, M., Sawaya, M. R., Wang, S., Phillips, M., Cascio, D., and Eisenberg, D. (2006) Toward the structural genomics of complexes:crystal structure of a PE/PPE protein complex from Mycobacteriumtuberculosis. Proc. Natl. Acad. Sci. U.S.A. 103, 8060-8065.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 8060-8065
-
-
Strong, M.1
Sawaya, M.R.2
Wang, S.3
Phillips, M.4
Cascio, D.5
Eisenberg, D.6
-
28
-
-
33645158291
-
TLSMDweb server for the generationof multi-group TLS models
-
Painter, J., and Merritt, E. A. (2006) TLSMDweb server for the generationof multi-group TLS models. J. Appl. Crystallogr. 39, 109-111.
-
(2006)
J. Appl. Crystallogr.
, vol.39
, pp. 109-111
-
-
Painter, J.1
Merritt, E.A.2
-
29
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modelling
-
Guex, N., and Peitsch, M. C. (1997) SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modelling.Electrophoresis 18, 2714-2723.
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
30
-
-
84889120137
-
Improved methods for building protein models in electron density mapsand the location of errors in thesemodels
-
Jones, T. A., Zou, J.-Y., Cowan, S. W., and Kjeldgaard, M. (1991) Improved methods for building protein models in electron density mapsand the location of errors in thesemodels. Acta Crystallogr.A47, 110-119.
-
(1991)
Acta Crystallogr.A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.-Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
31
-
-
0032006209
-
Systematic analysis of domainmotions in proteins from conformational change; New results on citratesynthase and T4 lysozyme
-
Hayward, S., and Berendsen, H. J.C. (1998) Systematic analysis of domainmotions in proteins from conformational change; new results on citratesynthase and T4 lysozyme. Proteins: Struct., Funct., Genet. 30, 144-154.
-
(1998)
Proteins: Struct., Funct., Genet.
, vol.30
, pp. 144-154
-
-
Hayward, S.1
Berendsen, H.J.C.2
-
32
-
-
0042011224
-
Matthews coefficientprobabilities: Improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals
-
Kantardjieff, K. A., and Rupp, B. (2003) Matthews coefficientprobabilities: improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals. Protein Sci. 12, 1865-1871.
-
(2003)
Protein Sci.
, vol.12
, pp. 1865-1871
-
-
Kantardjieff, K.A.1
Rupp, B.2
-
33
-
-
0014432781
-
Solvent content of protein crystals
-
Matthews, B. W. (1968) Solvent content of protein crystals. J. Mol.Biol. 33, 491-497.
-
(1968)
J. Mol.Biol.
, vol.33
, pp. 491-497
-
-
Matthews, B.W.1
-
34
-
-
0035957052
-
Dimeric pig heartsuccinate-coenzyme A transferase uses only one subunit to supportcatalysis
-
Lloyd, A. J., and Shoolingin-Jordan, P. M. (2001) Dimeric pig heartsuccinate-coenzyme A transferase uses only one subunit to supportcatalysis. Biochemistry 40, 2455-2467.
-
(2001)
Biochemistry
, vol.40
, pp. 2455-2467
-
-
Lloyd, A.J.1
Shoolingin-Jordan, P.M.2
-
35
-
-
0031569327
-
Glutaconate CoA-transferase from Acidaminococcusfermentans: The crystal structure reveals homology withother CoA-transferases
-
Jacob, U., Mack, M., Clausen, T., Huber, R., Buckel, W., and Messerschmidt, A. (1997) Glutaconate CoA-transferase from Acidaminococcusfermentans: the crystal structure reveals homology withother CoA-transferases. Structure 5, 415-426.
-
(1997)
Structure
, vol.5
, pp. 415-426
-
-
Jacob, U.1
MacK, M.2
Clausen, T.3
Huber, R.4
Buckel, W.5
Messerschmidt, A.6
-
36
-
-
77955451055
-
Thenitrated proteome in heart mitochondria of the db/db mouse model:characterization of nitrated tyrosine residues in SCOT
-
Wang, Y., Peng, F., Tong, W., Sun, H., Xu, N., and Liu, S. (2010) Thenitrated proteome in heart mitochondria of the db/db mouse model:characterization of nitrated tyrosine residues in SCOT, J. ProteomeRes. (in press) .
-
(2010)
J. ProteomeRes. (In Press)
-
-
Wang, Y.1
Peng, F.2
Tong, W.3
Sun, H.4
Xu, N.5
Liu, S.6
-
37
-
-
77954434882
-
The high-resolution structure ofpig heart succinyl-CoA:3-oxoacid coenzyme A transferase
-
Coker, S.-F., Lloyd, A. J., Mitchell, E., Lewis, G. R., Coker, A. R., and Shoolingin-Jordan, P. M. (2010) The high-resolution structure ofpig heart succinyl-CoA:3-oxoacid coenzyme A transferase. Acta Crystallogr. D66, 797-805.
-
(2010)
Acta Crystallogr D
, vol.66
, pp. 797-805
-
-
Coker, S.-F.1
Lloyd, A.J.2
Mitchell, E.3
Lewis, G.R.4
Coker, A.R.5
Shoolingin-Jordan, P.M.6
-
39
-
-
0026244229
-
MOLSCRIPT: A program to produce bothdetailed and schematic plots of protein structures
-
Kraulis, P. J. (1991) MOLSCRIPT: a program to produce bothdetailed and schematic plots of protein structures. J. Appl. Crystallogr.24, 946-950.
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
40
-
-
0030815133
-
Raster3D: Photorealisticmolecular graphics
-
(Carter, C. W., Jr., and Sweet, R. M., Eds.), Academic Press, New York
-
Merritt, E. A., and Bacon, D. J. (1997) Raster3D: photorealisticmolecular graphics, in Methods in Enzymology (Carter, C. W., Jr., and Sweet, R. M., Eds.) pp 505-524, Academic Press, New York.
-
(1997)
Methods in Enzymology
, pp. 505-524
-
-
Merritt, E.A.1
Bacon, D.J.2
|