메뉴 건너뛰기




Volumn 79, Issue 2, 2011, Pages 558-568

Structure and DNA-binding activity of the Pyrococcus furiosus SMC protein hinge domain

Author keywords

Chromosome condensation; Chromosome segregation; Coiled coil; Hinge domain; Single stranded DNA; Structural Maintenance of Chromosomes

Indexed keywords

DNA BINDING PROTEIN; PROTEIN STRUCTURAL MAINTENANCE OF CHROMOSOME; SINGLE STRANDED DNA; UNCLASSIFIED DRUG;

EID: 78650784720     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.22903     Document Type: Article
Times cited : (23)

References (50)
  • 1
    • 33646177549 scopus 로고    scopus 로고
    • At the heart of the chromosome: SMC proteins in action
    • Hirano T. At the heart of the chromosome: SMC proteins in action. Nat Rev Mol Cell Biol 2006; 7: 311-322.
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 311-322
    • Hirano, T.1
  • 2
    • 63049084910 scopus 로고    scopus 로고
    • Dynamics of the bacterial SMC complex and SMC-like proteins involved in DNA repair
    • Graumann PL, Knust T. Dynamics of the bacterial SMC complex and SMC-like proteins involved in DNA repair. Chromosome Res 2009; 17: 265-275.
    • (2009) Chromosome Res , vol.17 , pp. 265-275
    • Graumann, P.L.1    Knust, T.2
  • 4
    • 73349127026 scopus 로고    scopus 로고
    • Cohesin: its roles and mechanisms
    • Nasmyth K, Haering CH. Cohesin: its roles and mechanisms. Annu Rev Genet 2009; 43: 525-558.
    • (2009) Annu Rev Genet , vol.43 , pp. 525-558
    • Nasmyth, K.1    Haering, C.H.2
  • 5
    • 63049134689 scopus 로고    scopus 로고
    • The unnamed complex: what do we know about Smc5-Smc6?
    • De Piccoli G, Torres-Rosell J, Aragon L. The unnamed complex: what do we know about Smc5-Smc6? Chromosome Res 2009; 17: 251-263.
    • (2009) Chromosome Res , vol.17 , pp. 251-263
    • De Piccoli, G.1    Torres-Rosell, J.2    Aragon, L.3
  • 6
    • 0036242551 scopus 로고    scopus 로고
    • Molecular architecture of SMC proteins and the yeast cohesin complex
    • Haering CH, Lowe J, Hochwagen A, Nasmyth K. Molecular architecture of SMC proteins and the yeast cohesin complex. Mol Cell 2002; 9: 773-788.
    • (2002) Mol Cell , vol.9 , pp. 773-788
    • Haering, C.H.1    Lowe, J.2    Hochwagen, A.3    Nasmyth, K.4
  • 8
    • 4644220369 scopus 로고    scopus 로고
    • Structural biochemistry of ATP-driven dimerization and DNA-stimulated activation of SMC ATPases
    • Lammens A, Schele A, Hopfner KP. Structural biochemistry of ATP-driven dimerization and DNA-stimulated activation of SMC ATPases. Curr Biol 2004; 14: 1778-1782.
    • (2004) Curr Biol , vol.14 , pp. 1778-1782
    • Lammens, A.1    Schele, A.2    Hopfner, K.P.3
  • 9
    • 3343008805 scopus 로고    scopus 로고
    • Positive and negative regulation of SMC-DNA interactions by ATP and accessory proteins
    • Hirano M, Hirano T. Positive and negative regulation of SMC-DNA interactions by ATP and accessory proteins. EMBO J 2004; 23: 2664-2673.
    • (2004) EMBO J , vol.23 , pp. 2664-2673
    • Hirano, M.1    Hirano, T.2
  • 10
    • 33750028445 scopus 로고    scopus 로고
    • Cohesin's ATPase activity is stimulated by the C-terminal Winged-Helix domain of its kleisin subunit
    • Arumugam P, Nishino T, Haering CH, Gruber S, Nasmyth K. Cohesin's ATPase activity is stimulated by the C-terminal Winged-Helix domain of its kleisin subunit. Curr Biol 2006; 16: 1998-2008.
    • (2006) Curr Biol , vol.16 , pp. 1998-2008
    • Arumugam, P.1    Nishino, T.2    Haering, C.H.3    Gruber, S.4    Nasmyth, K.5
  • 11
    • 2942707858 scopus 로고    scopus 로고
    • DNA interaction and dimerization of eukaryotic SMC hinge domains
    • Chiu A, Revenkova E, Jessberger R. DNA interaction and dimerization of eukaryotic SMC hinge domains. J Biol Chem 2004; 279: 26233-26242.
    • (2004) J Biol Chem , vol.279 , pp. 26233-26242
    • Chiu, A.1    Revenkova, E.2    Jessberger, R.3
  • 12
    • 0036834549 scopus 로고    scopus 로고
    • Hinge-mediated dimerization of SMC protein is essential for its dynamic interaction with DNA
    • Hirano M, Hirano T. Hinge-mediated dimerization of SMC protein is essential for its dynamic interaction with DNA. EMBO J 2002; 21: 5733-5744.
    • (2002) EMBO J , vol.21 , pp. 5733-5744
    • Hirano, M.1    Hirano, T.2
  • 13
    • 30744441604 scopus 로고    scopus 로고
    • Opening closed arms: long-distance activation of SMC ATPase by hinge-DNA interactions
    • Hirano M, Hirano T. Opening closed arms: long-distance activation of SMC ATPase by hinge-DNA interactions. Mol Cell 2006; 21: 175-186.
    • (2006) Mol Cell , vol.21 , pp. 175-186
    • Hirano, M.1    Hirano, T.2
  • 14
    • 77953574613 scopus 로고    scopus 로고
    • Structure and DNA binding activity of the mouse condensin hinge domain highlight common and diverse features of SMC proteins
    • Griese JJ, Witte G, Hopfner KP. Structure and DNA binding activity of the mouse condensin hinge domain highlight common and diverse features of SMC proteins. Nucleic Acids Res 2010; 38: 3454-3465.
    • (2010) Nucleic Acids Res , vol.38 , pp. 3454-3465
    • Griese, J.J.1    Witte, G.2    Hopfner, K.P.3
  • 15
    • 2542611475 scopus 로고    scopus 로고
    • Cti1/C1D interacts with condensin SMC hinge and supports the DNA repair function of condensin
    • Chen ES, Sutani T, Yanagida M. Cti1/C1D interacts with condensin SMC hinge and supports the DNA repair function of condensin. Proc Natl Acad Sci USA 2004; 101: 8078-8083.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 8078-8083
    • Chen, E.S.1    Sutani, T.2    Yanagida, M.3
  • 16
    • 67649809770 scopus 로고    scopus 로고
    • Architecture of the Smc5/6 complex of Saccharomyces cerevisiae reveals a unique interaction between the Nse5-6 subcomplex and the hinge regions of Smc5 and Smc6
    • Duan X, Yang Y, Chen YH, Arenz J, Rangi GK, Zhao X, Ye H. Architecture of the Smc5/6 complex of Saccharomyces cerevisiae reveals a unique interaction between the Nse5-6 subcomplex and the hinge regions of Smc5 and Smc6. J Biol Chem 2009; 284: 8507-8515.
    • (2009) J Biol Chem , vol.284 , pp. 8507-8515
    • Duan, X.1    Yang, Y.2    Chen, Y.H.3    Arenz, J.4    Rangi, G.K.5    Zhao, X.6    Ye, H.7
  • 17
    • 0035875918 scopus 로고    scopus 로고
    • Bimodal activation of SMC ATPase by intra- and inter-molecular interactions
    • Hirano M, Anderson DE, Erickson HP, Hirano T. Bimodal activation of SMC ATPase by intra- and inter-molecular interactions. EMBO J 2001; 20: 3238-3250.
    • (2001) EMBO J , vol.20 , pp. 3238-3250
    • Hirano, M.1    Anderson, D.E.2    Erickson, H.P.3    Hirano, T.4
  • 18
    • 0032403026 scopus 로고    scopus 로고
    • ATP-dependent aggregation of single-stranded DNA by a bacterial SMC homodimer
    • Hirano M, Hirano T. ATP-dependent aggregation of single-stranded DNA by a bacterial SMC homodimer. EMBO J 1998; 17: 7139-7148.
    • (1998) EMBO J , vol.17 , pp. 7139-7148
    • Hirano, M.1    Hirano, T.2
  • 19
    • 70450225043 scopus 로고    scopus 로고
    • The crystal structure of the hinge domain of the Escherichia coli structural maintenance of chromosomes protein MukB
    • Li Y, Schoeffler AJ, Berger JM, Oakley MG. The crystal structure of the hinge domain of the Escherichia coli structural maintenance of chromosomes protein MukB. J Mol Biol 2010; 395: 11-19.
    • (2010) J Mol Biol , vol.395 , pp. 11-19
    • Li, Y.1    Schoeffler, A.J.2    Berger, J.M.3    Oakley, M.G.4
  • 20
    • 77951245614 scopus 로고    scopus 로고
    • Crystal structure of the MukB hinge domain with coiled-coil stretches and its functional implications
    • Ku B, Lim JH, Shin HC, Shin SY, Oh BH. Crystal structure of the MukB hinge domain with coiled-coil stretches and its functional implications. Proteins: Struct Funct Bioinform 2010; 78: 1483-1490.
    • (2010) Proteins: Struct Funct Bioinform , vol.78 , pp. 1483-1490
    • Ku, B.1    Lim, J.H.2    Shin, H.C.3    Shin, S.Y.4    Oh, B.H.5
  • 21
    • 0022273106 scopus 로고
    • 1H-15N heteronuclear NMR studies of Escherichia coli thioredoxin in samples isotopically labeled by residue type
    • LeMaster DM, Richards FM. 1H-15N heteronuclear NMR studies of Escherichia coli thioredoxin in samples isotopically labeled by residue type. Biochemistry 1985; 24: 7263-7268.
    • (1985) Biochemistry , vol.24 , pp. 7263-7268
    • LeMaster, D.M.1    Richards, F.M.2
  • 23
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli UK. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970; 227: 680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 24
    • 0027879008 scopus 로고
    • Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
    • Kabsch W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J Appl Crystallogr 1993; 26: 795-800.
    • (1993) J Appl Crystallogr , vol.26 , pp. 795-800
    • Kabsch, W.1
  • 27
    • 0028103275 scopus 로고
    • The CCP4 suite: programs for protein crystallography
    • Collaborative Computational Project Number 4.
    • Collaborative Computational Project Number 4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr D 1994; 50 (Pt 5): 760-763.
    • (1994) Acta Crystallogr D , vol.50 , Issue.PART 5 , pp. 760-763
  • 35
    • 0003845223 scopus 로고    scopus 로고
    • The PyMOL Molecular Graphics System
    • Palo Alto, CA, DeLano Scientific LLC;
    • DeLano WL. The PyMOL Molecular Graphics System. Palo Alto, CA: DeLano Scientific LLC; 2008.
    • (2008)
    • DeLano, W.L.1
  • 37
    • 0029185933 scopus 로고
    • CRYSOL-a program to evaluate x-ray solution scattering of biological macromolecules from atomic coordinates
    • Svergun D, Barberato C, Koch MHJ. CRYSOL-a program to evaluate x-ray solution scattering of biological macromolecules from atomic coordinates. J Appl Crystallogr 1995; 28: 768-773.
    • (1995) J Appl Crystallogr , vol.28 , pp. 768-773
    • Svergun, D.1    Barberato, C.2    Koch, M.H.J.3
  • 38
    • 0035010533 scopus 로고    scopus 로고
    • Determination of domain structure of proteins from X-ray solution scattering
    • Svergun DI, Petoukhov MV, Koch MH. Determination of domain structure of proteins from X-ray solution scattering. Biophys J 2001; 80: 2946-2953.
    • (2001) Biophys J , vol.80 , pp. 2946-2953
    • Svergun, D.I.1    Petoukhov, M.V.2    Koch, M.H.3
  • 39
    • 0035124442 scopus 로고    scopus 로고
    • Automated matching of high- and low-resolution structural models
    • Kozin MB, Svergun DI. Automated matching of high- and low-resolution structural models. J Appl Crystallogr 2001; 34: 33-41.
    • (2001) J Appl Crystallogr , vol.34 , pp. 33-41
    • Kozin, M.B.1    Svergun, D.I.2
  • 40
    • 0037701585 scopus 로고    scopus 로고
    • Uniqueness of ab initio shape determination in small-angle scattering
    • Volkov VV, Svergun DI. Uniqueness of ab initio shape determination in small-angle scattering. J Appl Crystallogr 2003; 36: 860-864.
    • (2003) J Appl Crystallogr , vol.36 , pp. 860-864
    • Volkov, V.V.1    Svergun, D.I.2
  • 41
    • 0035209087 scopus 로고    scopus 로고
    • Using Situs for the registration of protein structures with low-resolution bead models from X-ray solution scattering
    • Wriggers W, Chacon P. Using Situs for the registration of protein structures with low-resolution bead models from X-ray solution scattering. J Appl Crystallogr 2001; 34: 773-776.
    • (2001) J Appl Crystallogr , vol.34 , pp. 773-776
    • Wriggers, W.1    Chacon, P.2
  • 42
    • 34547567980 scopus 로고    scopus 로고
    • OligoCalc: an online oligonucleotide properties calculator
    • (Web Server issue):
    • Kibbe WA. OligoCalc: an online oligonucleotide properties calculator. Nucleic Acids Res 2007; 35 (Web Server issue): W43-W46.
    • (2007) Nucleic Acids Res , vol.35
    • Kibbe, W.A.1
  • 45
    • 13444302537 scopus 로고    scopus 로고
    • Distinct functions of condensin I and II in mitotic chromosome assembly
    • Hirota T, Gerlich D, Koch B, Ellenberg J, Peters JM. Distinct functions of condensin I and II in mitotic chromosome assembly. J Cell Sci 2004; 117 (Pt 26): 6435-6445.
    • (2004) J Cell Sci , vol.117 , Issue.PART 26 , pp. 6435-6445
    • Hirota, T.1    Gerlich, D.2    Koch, B.3    Ellenberg, J.4    Peters, J.M.5
  • 46
    • 34248146555 scopus 로고    scopus 로고
    • Condensin I binds chromatin early in prophase and displays a highly dynamic association with Drosophila mitotic chromosomes
    • Oliveira RA, Heidmann S, Sunkel CE. Condensin I binds chromatin early in prophase and displays a highly dynamic association with Drosophila mitotic chromosomes. Chromosoma 2007; 116: 259-274.
    • (2007) Chromosoma , vol.116 , pp. 259-274
    • Oliveira, R.A.1    Heidmann, S.2    Sunkel, C.E.3
  • 48
    • 65549135760 scopus 로고    scopus 로고
    • Recruitment of condensin to replication origin regions by ParB/SpoOJ promotes chromosome segregation in B. subtilis
    • Gruber S, Errington J. Recruitment of condensin to replication origin regions by ParB/SpoOJ promotes chromosome segregation in B. subtilis. Cell 2009; 137: 685-696.
    • (2009) Cell , vol.137 , pp. 685-696
    • Gruber, S.1    Errington, J.2
  • 49
    • 65549149524 scopus 로고    scopus 로고
    • Recruitment of SMC by ParB-parS organizes the origin region and promotes efficient chromosome segregation
    • Sullivan NL, Marquis KA, Rudner DZ. Recruitment of SMC by ParB-parS organizes the origin region and promotes efficient chromosome segregation. Cell 2009; 137: 697-707.
    • (2009) Cell , vol.137 , pp. 697-707
    • Sullivan, N.L.1    Marquis, K.A.2    Rudner, D.Z.3
  • 50
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet F. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res 1988; 16: 10881-10890.
    • (1988) Nucleic Acids Res , vol.16 , pp. 10881-10890
    • Corpet, F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.