-
1
-
-
37249032102
-
Dynamic personalities of proteins
-
Henzler-Wildman K, Kern D (2007) Dynamic personalities of proteins. Nature 450: 964-972.
-
(2007)
Nature
, vol.450
, pp. 964-972
-
-
Henzler-Wildman, K.1
Kern, D.2
-
2
-
-
0141865614
-
2+-ATPase based on a comparison between the E1Ca and E2TG Structures
-
Reuter N, Hinsen K, Lacapere JJ (2003) Normal mode analysis of the Ca2+-ATPase based on a comparison between the E1Ca and E2TG Structures. Biophys J 84: 2186-2197.
-
(2003)
Biophys J
, vol.84
, pp. 2186-2197
-
-
Reuter, N.1
Hinsen, K.2
Lacapere, J.J.3
-
3
-
-
34848852941
-
Allosteric transitions in the chaperonin GroEL are captured by a dominant normal mode that is most robust to sequence variations
-
Zheng W, Brooks BR, Thirumalai D (2007) Allosteric transitions in the chaperonin GroEL are captured by a dominant normal mode that is most robust to sequence variations. Biophys J 93: 2289-2299.
-
(2007)
Biophys J
, vol.93
, pp. 2289-2299
-
-
Zheng, W.1
Brooks, B.R.2
Thirumalai, D.3
-
4
-
-
14844286108
-
Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes
-
Ma J (2005) Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes. Structure 13: 373-380.
-
(2005)
Structure
, vol.13
, pp. 373-380
-
-
Ma, J.1
-
6
-
-
25844431698
-
Coarse-grained normal mode analysis in structural biology
-
Bahar I, Rader AJ (2005) Coarse-grained normal mode analysis in structural biology. Curr Opin Struc Biol 15: 1-7.
-
(2005)
Curr Opin Struc Biol
, vol.15
, pp. 1-7
-
-
Bahar, I.1
Rader, A.J.2
-
7
-
-
34248159870
-
Thorough validation of protein normal mode analysis: A comparative study with essential dynamics
-
Rueda M, Chacon P, Orozco M (2007) Thorough validation of protein normal mode analysis: a comparative study with essential dynamics. Structure 15: 565-575.
-
(2007)
Structure
, vol.15
, pp. 565-575
-
-
Rueda, M.1
Chacon, P.2
Orozco, M.3
-
9
-
-
49049096095
-
Evolutionary conservation of protein vibrational dynamics
-
Maguid S, Fernandez-Alberti S, Echave J (2008) Evolutionary conservation of protein vibrational dynamics. Gene 422: 7-13.
-
(2008)
Gene
, vol.422
, pp. 7-13
-
-
Maguid, S.1
Fernandez-Alberti, S.2
Echave, J.3
-
10
-
-
23244450294
-
Exploring the common dynamics of homologous proteins. Application to the globin family
-
Maguid S, Fernandez-Alberti S, Ferrelli L, Echave J (2005) Exploring the common dynamics of homologous proteins. Application to the globin family. Biophys J 89: 3-13.
-
(2005)
Biophys J
, vol.89
, pp. 3-13
-
-
Maguid, S.1
Fernandez-Alberti, S.2
Ferrelli, L.3
Echave, J.4
-
11
-
-
0034029144
-
Proteins with similar architecture exhibit similar large-scale dynamic behavior
-
Keskin O, Jernigan RL, Bahar I (2000) Proteins with similar architecture exhibit similar large-scale dynamic behavior. Biophys J 78: 2093-2106.
-
(2000)
Biophys J
, vol.78
, pp. 2093-2106
-
-
Keskin, O.1
Jernigan, R.L.2
Bahar, I.3
-
12
-
-
0030777303
-
CATH - A hierarchic classification of protein domain structures
-
Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM (1997) CATH-a hierarchic classification of protein domain structures. Structure 5: 1093-1108.
-
(1997)
Structure
, vol.5
, pp. 1093-1108
-
-
Orengo, C.A.1
Michie, A.D.2
Jones, S.3
Jones, D.T.4
Swindells, M.B.5
Thornton, J.M.6
-
13
-
-
69849105908
-
Probing the 'dark matter' of protein fold space
-
Taylor WR, Chelliah V, Hollup SM, MacDonald JT, Jonassen I (2009) Probing the 'dark matter' of protein fold space. Structure 17: 1244-1252.
-
(2009)
Structure
, vol.17
, pp. 1244-1252
-
-
Taylor, W.R.1
Chelliah, V.2
Hollup, S.M.3
MacDonald, J.T.4
Jonassen, I.5
-
14
-
-
39749097808
-
Prediction of protein structure from ideal forms
-
Taylor WR, Bartlett GJ, Chelliah V, Klose D, Lin K, Sheldon T, Jonassen I (2008) Prediction of protein structure from ideal forms. Proteins: Struct Funct Bioinformatics 70: 1610-1619.
-
(2008)
Proteins: Struct Funct Bioinformatics
, vol.70
, pp. 1610-1619
-
-
Taylor, W.R.1
Bartlett, G.J.2
Chelliah, V.3
Klose, D.4
Lin, K.5
Sheldon, T.6
Jonassen, I.7
-
15
-
-
0037061460
-
A Periodic Table for protein structure
-
Taylor WR (2002) A Periodic Table for protein structure. Nature 416: 657-660.
-
(2002)
Nature
, vol.416
, pp. 657-660
-
-
Taylor, W.R.1
-
16
-
-
0033954256
-
The protein data bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) The protein data bank. Nucleic Acids Res 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
17
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 247: 536-540.
-
(1995)
J Mol Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
18
-
-
0032533790
-
Analysis of domain motions by approximate normal mode calculations
-
Hinsen K (1998) Analysis of domain motions by approximate normal mode calculations. Proteins 33: 417-429.
-
(1998)
Proteins
, vol.33
, pp. 417-429
-
-
Hinsen, K.1
-
19
-
-
0034333103
-
Harmonicity in slow protein dynamics
-
Hinsen K, Petrescu AJ, Dellerue S, Bellissent-Funel MC, Kneller GR (2000) Harmonicity in slow protein dynamics. Chem Phys 261: 25-37.
-
(2000)
Chem Phys
, vol.261
, pp. 25-37
-
-
Hinsen, K.1
Petrescu, A.J.2
Dellerue, S.3
Bellissent-Funel, M.C.4
Kneller, G.R.5
-
20
-
-
0001962564
-
The molecular modeling toolkit: A new approach to molecular simulations
-
Hinsen K (2000) The molecular modeling toolkit: a new approach to molecular simulations. J Comput Chem 21: 79-85.
-
(2000)
J Comput Chem
, vol.21
, pp. 79-85
-
-
Hinsen, K.1
-
21
-
-
0037022347
-
Flexibility and packing in proteins
-
Halle B (2002) Flexibility and packing in proteins. Proc Natl Acad Sci USA 99: 1274-1279.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 1274-1279
-
-
Halle, B.1
-
22
-
-
2442543557
-
Accurate and efficient description of protein vibrational dynamics: Comparing molecular dynamics and gaussian models
-
Micheletti C, Carloni P, Maritan A (2004) Accurate and efficient description of protein vibrational dynamics: comparing molecular dynamics and gaussian models. Proteins: Struct Funct Bioinformatics 55: 635-645.
-
(2004)
Proteins: Struct Funct Bioinformatics
, vol.55
, pp. 635-645
-
-
Micheletti, C.1
Carloni, P.2
Maritan, A.3
-
24
-
-
33344460713
-
Decoy models for protein structure score normalisation
-
Taylor WR (2006) Decoy models for protein structure score normalisation. J Mol Biol 357: 676-699.
-
(2006)
J Mol Biol
, vol.357
, pp. 676-699
-
-
Taylor, W.R.1
-
25
-
-
0033977581
-
The astral compendium for sequence and structure analysis
-
Brenner SE, Koehl P, Levitt M (2000) The astral compendium for sequence and structure analysis. Nucleic Acids Res 28: 254-256.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 254-256
-
-
Brenner, S.E.1
Koehl, P.2
Levitt, M.3
-
26
-
-
0033824470
-
DaliLite workbench for protein structure comparison
-
Holm L, Park J (2000) DaliLite workbench for protein structure comparison. Bioinformatics 16: 566-567.
-
(2000)
Bioinformatics
, vol.16
, pp. 566-567
-
-
Holm, L.1
Park, J.2
|